mRNA_H-elongata_contig19382.5380.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19382.5380.1
Unique NamemRNA_H-elongata_contig19382.5380.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: D8LCW7_ECTSI (Zinc transporter zupT, Zinc transporter ZIP, metal ion transmembrane transporter activity n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCW7_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 1.610e-69
Identity = 131/161 (81.37%), Postives = 141/161 (87.58%), Query Frame = 1
Query:  388 TTVQADVPDEKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILFLY 870
            T   AD  +EKLVRMGL+TA+AIGIHNFPEG+ATFVA LSDP V    XXXXXXXXXXXX CVAIPVYYATGNRWKAFGWA LSG+SEPIGAGL WLILKD M+E+VYG+LFGVVAGMMV I++ ELIPTAVRYDPTD VTTNSIIAGM IMALSL LFLY
Sbjct:  269 TPAVADGDNEKLVRMGLLTAVAIGIHNFPEGLATFVAALSDPSVXXXXXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDIMSELVYGLLFGVVAGMMVNITIHELIPTAVRYDPTDKVTTNSIIAGMAIMALSLTLFLY 429          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: A0A7S2RNM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNM0_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.020e-62
Identity = 139/290 (47.93%), Postives = 179/290 (61.72%), Query Frame = 1
Query:    1 AYLYGTLSFFGGILFYKCIDYVVHFLEGNASHHDIDIELYDLEQSSPDNGTSAGRNNFRGGVVSDPSASSDV--LKGGKVQPIQQQEHDQKSLDLAEPEKVSTAGGVQSAIEEEKRGGEGAGHDGAEAAVETTVQADVPDEKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILF 864
            A  Y T  FFGG++    +D+ VH++ G+A+H+D+ +++ +L +   +   +  R     G   D +A S V  ++GG     Q      ++  L E E  +  G   +  EE+ R                        ++LVRMGLMTALAIGIHN PEG+ATFV TL DP VG  LXXXXXXXXXXXX CVAIP+YYAT +RW+AF WAF+SGISEPIGAGL W +L   + + VYGI+FG+V GMMV I + EL+PTA RYDP D  TT S IAGM +MALSLILF
Sbjct:  100 ANAYATACFFGGVIVGNFLDWTVHYINGDANHNDVVLDVDELRRELEE-AEAWERRVAEEGAAKDQAALSGVELVQGGAPIGSQAGGGAARTDALGELETAAKPGEESTTPEEDGR--------------------TEDSQRLVRMGLMTALAIGIHNLPEGLATFVGTLDDPAVGVGLXXXXXXXXXXXXXCVAIPIYYATHDRWQAFKWAFISGISEPIGAGLGWAVLHSIIDDRVYGIVFGLVGGMMVNICIHELLPTAFRYDPGDRFTTKSFIAGMALMALSLILF 368          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: A0A6V2QEW8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QEW8_HETAK)

HSP 1 Score: 209 bits (533), Expect = 2.900e-62
Identity = 143/294 (48.64%), Postives = 184/294 (62.59%), Query Frame = 1
Query:    1 AYLYGTLSFFGGILFYKCIDYVVHFLEGNASHHDIDIELYDLEQSSPDNGTSAGRNNFRGGVVSDPSASSDVLKGGKVQPIQQQEHDQKSLDLAEPEKVSTAGGVQSAIEEEKRGG----EGAGHDGAEAAVETTVQADVPDEKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILFLY 870
            AYLY +LSFFGGI F K +D +VH L+ + SH     +L D  + +        + ++    V  PS ++  L      P      D  +L+L +  K     G+ S   +  R G     G+       A + T   +  D +LVRMG++TALAIG+HNFPEG+ATFVATL DP VG ALXXXXXXXXXXXX CVAIP+YYATG+R KAFGWA +SGISEPIGAGL WL+L    ++++YG      AGMMV I L ELIPTA R+DP D++ +N ++AGM IMALSL+LF Y
Sbjct:   78 AYLYASLSFFGGIAFGKTLDVLVHKLDKSHSH-----DLPDRPEEASTTDIEDSQTSYDQ-TVDKPSKTNATLPQAVTSP------DLTTLNLDKAGKTVAGAGLGSPAGKGSRRGMLTTAGSATSLDTEATDGTHSKEPKDARLVRMGVLTALAIGLHNFPEGLATFVATLDDPSVGGALXXXXXXXXXXXXXCVAIPIYYATGSRAKAFGWALISGISEPIGAGLGWLVLSAVFSDVLYGXXXXXXAGMMVNICLHELIPTAHRHDPKDTIVSNCLVAGMAIMALSLVLFQY 359          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: A0A6H5JKG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG5_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 4.850e-62
Identity = 138/289 (47.75%), Postives = 175/289 (60.55%), Query Frame = 1
Query:    1 AYLYGTLSFFGGILFYKCIDYVVHFLEGNA-SHHDIDIELYDLEQSSPDNGTSAGRNNFRGGVVSDPSASSDVLKGGKVQPIQQQEHDQKSLDLAEPEKVSTAGGVQSAIEEEKRGGEGAGHDGAEAAVETTVQADVPDEKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILF 864
            AYLY TLS FGG+L Y+ I++VV  L G A   H+++ + YDL  SS +  T++G          D S +S + + G               D+ +P+   T GG  +   +E                           KLV MGL+TA+AIGIHNFP+G+ATFV++L+DP V    XXXXXXXXXXXX+CVA+PVYY TG+R KAFGWA LSG +EPIGA L WLILKD M+E+VYGIL          + + +LIPTAVR+DP D VTTNSI AGM IMALSL+LF
Sbjct:   83 AYLYATLSLFGGMLCYRGIEFVVQLLGGGAFGEHNLEFDQYDLNNSSSNTVTASG----------DSSRNSTIKREGP-------------RDVEQPQPQETTGGANAVSGDEA--------------------------KLVHMGLLTAVAIGIHNFPDGLATFVSSLADPSVXXXXXXXXXXXXXXXXMCVAMPVYYGTGSRCKAFGWALLSGATEPIGAALGWLILKDVMSELVYGILXXXXXXXXXXVVIHDLIPTAVRFDPADKVTTNSISAGMAIMALSLVLF 322          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: A0A7S2BFN7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BFN7_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.380e-60
Identity = 140/295 (47.46%), Postives = 179/295 (60.68%), Query Frame = 1
Query:    1 AYLYGTLSFFGGILFYKCIDYVVHFLEGNASHHDIDIELYDLEQSSPDNGTSAGRNNFRGGVVSDPSASSDVLKGGKVQPIQQQEHDQKSLDLAEPEKVSTAGGVQ----SAIEEEKRGGEGAGH-DGAEAAVETTVQADVPDEK--LVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILF 864
            A+    L FF GI     +DYVVH+LEG         EL+   + + + G     +        D  +  D + G K           K   +A  E+V+ AGG      SAI     G   +    G E A+   V A   D +  LV+MG+MTALAIG+HNFPEG+ATFV TL DP VG   XXXXXXXXXXXX CV+IP+YYAT NRW+AF WAF+SGISEPIGA L W+ L + M++  Y ++FG+V+GMMV I + ELIPTAV+YDP D VT+ S+IAGM++MALSL+LF
Sbjct:  104 AHALAALCFFSGIAVGNLLDYVVHWLEGKDGAASEGAELFADAEGTTEKGQCCKSH--------DTESMFDAIDGIKA----------KHQAVATNEEVAEAGGAPKDAGSAITVSTSGSPNSSDLSGKEGALPMEVGAKDDDRQKALVKMGMMTALAIGLHNFPEGLATFVGTLDDPTVGXXXXXXXXXXXXXXXXCVSIPIYYATKNRWQAFKWAFISGISEPIGAALGWIFLANCMSDSAYAVIFGLVSGMMVNICIHELIPTAVKYDPEDKVTSKSVIAGMLVMALSLVLF 380          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: F0Y6B2_AURAN (Cilia- and flagella-associated protein 206 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6B2_AURAN)

HSP 1 Score: 211 bits (536), Expect = 2.570e-58
Identity = 141/288 (48.96%), Postives = 171/288 (59.38%), Query Frame = 1
Query:    1 AYLYGTLSFFGGILFYKCIDYVVHFLEGNASHHDIDIELYDLEQSSPDNGTSAGRNNFRGGVVSDPSASSDVLKGGKVQPIQQQEHDQKSLDLAEPEKVSTAGGVQSAIEEEKRGGEGAGHDGAEAAVETTVQADVPDEKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILF 864
            AYL  T S F G+LF   +D +VH L+ N + H        + +S                V  D  A+S    G  V        D+      +   V+   G  S  E      E    +    A+E        D+ L RMG+MTALAIGIHNFPEG+ATFVATL DP VG ALXXXXXXXXXXXX CV+IP+Y+ATG+RWKAF WA LSG+SEP+GA L WL+LKD   E++YGI+FG+VAGMMV+I L ELIPTA RYDP D V T SI AGM++MA SL LF
Sbjct:   79 AYLAATASLFAGMLFMSLLDALVHTLDPNHTGHMSSDPARYIPKS----------------VEGDAPAASCCAMGDDV-------FDEIEARKRKARAVADEAGAPSQAEGRPNASEDTDAESGAKALEVEAPEAAGDKPLERMGVMTALAIGIHNFPEGLATFVATLDDPAVGGALXXXXXXXXXXXXXCVSIPIYFATGDRWKAFRWALLSGVSEPVGALLGWLLLKDHFNELLYGIVFGMVAGMMVMICLNELIPTAHRYDPQDKVVTKSITAGMVVMAASLCLF 343          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: A0A6U3SFV9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SFV9_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.510e-56
Identity = 131/308 (42.53%), Postives = 188/308 (61.04%), Query Frame = 1
Query:    1 AYLYGTLSFFGGILFYKCIDYVVHFLEG---NASHHDIDIELYDLEQSSPDNGTSAGRNNFRGGVVSDPSASSDVLKGGKVQPIQQ--QEHDQKSLDLAEPEKVSTAGGVQSAIEEEKRGGEGA-----GHDGAEAAVETTVQADVPD----------EKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILF 864
            A++Y TL FFGG++    ID++V    G   N +H   ++   DL ++       A +N        +  A+   + G    P+ +  + H++   ++ + ++  T   V++  ++   G  G+       DG +  ++   +  V            +KLV+MG+ TA+AIG+HNFPEG+ATFVA L DP VG  LXXXXXXXXXXXX CVA+P+YYATGNR KAFGWA +SG+SEP+ A L W IL ++ ++ +Y +LFG+V GMMVIIS +EL+PTA RYDP D+V T S I GM+IMALSL+LF
Sbjct:   80 AHIYATLCFFGGVIIMLLIDFLVRLFSGEHHNHNHPSSNVPQQDLSKAE------AEKNGLEDASEEEQFAAPHCV-GCSDDPVGELREWHEKAEAEVRDHKQNQTVASVETPGDQNAAGDAGSLSADSASDGFKDEIDGRTKLAVDGFKGLESSHEHKKLVKMGISTAIAIGLHNFPEGLATFVAALDDPRVGGVLXXXXXXXXXXXXXCVALPIYYATGNRTKAFGWALISGLSEPLAALLGWAILANSFSDTLYAVLFGIVGGMMVIISCKELLPTAHRYDPEDTVVTYSFIGGMVIMALSLVLF 380          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: A0A7S3QH48_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QH48_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.600e-56
Identity = 103/154 (66.88%), Postives = 134/154 (87.01%), Query Frame = 1
Query:  403 DVPDEKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILF 864
            ++ ++KLVRMG+ TA+AI +HNFPEG+ATFVA L DP +GA LXXXXXXXXXXXX CVA+P+YYATGNR KAF W  LSG+SEP+GA L WL+L ++ ++ +YG++FG+VAGMMV+ISL+EL+PTA RYDP D+V TNSIIAGM+++ALSL+L+
Sbjct:  189 EIENKKLVRMGMQTAVAIALHNFPEGLATFVAVLEDPKIGAILXXXXXXXXXXXXFCVALPIYYATGNRKKAFWWGALSGMSEPVGALLGWLVLANSFSDAIYGLMFGLVAGMMVMISLKELLPTAYRYDPGDTVVTNSIIAGMVVIALSLVLY 342          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: A0A8J2SXP3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXP3_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.100e-55
Identity = 106/153 (69.28%), Postives = 127/153 (83.01%), Query Frame = 1
Query:  412 DEKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILFLY 870
            D++L  MG+MTALAIGIHNFPEG+ATFVATL DP VGA+ XXXXXXXXXXXX CV+IP+Y+ATG+RWKAF WA LSG+SE +GA L W +LKD    ++YGI+FG+VAGMM++I L ELIPTA RYDP D V T SI+AGM +MA SL LF+Y
Sbjct:  168 DKRLESMGMMTALAIGIHNFPEGLATFVATLDDPAVGASXXXXXXXXXXXXXXCVSIPIYFATGDRWKAFRWALLSGVSEIVGALLGWALLKDHFDNLLYGIVFGMVAGMMIMICLNELIPTAHRYDPRDRVVTKSIVAGMAVMAASLCLFVY 320          
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Match: B7G5W7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5W7_PHATC)

HSP 1 Score: 192 bits (489), Expect = 2.400e-55
Identity = 107/151 (70.86%), Postives = 126/151 (83.44%), Query Frame = 1
Query:  415 EKLVRMGLMTALAIGIHNFPEGVATFVATLSDPVVGAALXXXXXXXXXXXXLCVAIPVYYATGNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVIISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILFL 867
            +KL+RM L TALAIGIHNFPEG+ATFVA L DP VGA L XXXXXXXXXXX CVA+PVYYATGNRWKAFGWA LSG+SEP+ A L W +L  + ++ +YG+LFG+VAGMMV+IS +EL+PTA RYDP D V T + I+GM IMALSL+LFL
Sbjct:  239 KKLLRMSLNTALAIGIHNFPEGLATFVAALGDPKVGAVLAXXXXXXXXXXXXCVAMPVYYATGNRWKAFGWAMLSGMSEPVAALLGWAVLASSFSDTLYGLLFGMVAGMMVVISTRELLPTAHRYDPEDCVVTYAFISGMCIMALSLVLFL 389          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19382.5380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCW7_ECTSI1.610e-6981.37Zinc transporter zupT, Zinc transporter ZIP, metal... [more]
A0A7S2RNM0_9STRA2.020e-6247.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V2QEW8_HETAK2.900e-6248.64Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6H5JKG5_9PHAE4.850e-6247.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BFN7_9STRA2.380e-6047.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y6B2_AURAN2.570e-5848.96Cilia- and flagella-associated protein 206 n=1 Tax... [more]
A0A6U3SFV9_9STRA2.510e-5642.53Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3QH48_9STRA2.600e-5666.88Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8J2SXP3_9STRA1.100e-5569.28Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
B7G5W7_PHATC2.400e-5570.86Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19382contigH-elongata_contig19382:4633..5505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue2.3e-66
Seed eggNOG ortholog2880.D8LCW7
KEGG rclassRC00003,RC00392
KEGG koko:K00545,ko:K07238
KEGG TC2.A.5.5
KEGG ReactionR02534,R02920,R03304,R04301,R04762,R04764,R04881,R04887
KEGG Pathwayko00140,ko00350,ko00965,ko01100,ko04728,map00140,map00350,map00965,map01100,map04728
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsCOG0428@1,KOG2474@2759
EC2.1.1.6
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size873
Cds size873
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.6924505-CDS-H-elongata_contig19382:4632..55051622930103.6924505-CDS-H-elongata_contig19382:4632..5505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19382 4633..5505 +
1691679281.3596225-CDS-H-elongata_contig19382:4632..55051691679281.3596225-CDS-H-elongata_contig19382:4632..5505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19382 4633..5505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19382.5380.1prot_H-elongata_contig19382.5380.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19382 4633..5505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19382.5380.1

>prot_H-elongata_contig19382.5380.1 ID=prot_H-elongata_contig19382.5380.1|Name=mRNA_H-elongata_contig19382.5380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp
AYLYGTLSFFGGILFYKCIDYVVHFLEGNASHHDIDIELYDLEQSSPDNG
TSAGRNNFRGGVVSDPSASSDVLKGGKVQPIQQQEHDQKSLDLAEPEKVS
TAGGVQSAIEEEKRGGEGAGHDGAEAAVETTVQADVPDEKLVRMGLMTAL
AIGIHNFPEGVATFVATLSDPVVGAALAVAIAIHNIPEGLCVAIPVYYAT
GNRWKAFGWAFLSGISEPIGAGLAWLILKDTMTEMVYGILFGVVAGMMVI
ISLQELIPTAVRYDPTDSVTTNSIIAGMIIMALSLILFLY*
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mRNA from alignment at H-elongata_contig19382:4633..5505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19382.5380.1 ID=mRNA_H-elongata_contig19382.5380.1|Name=mRNA_H-elongata_contig19382.5380.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig19382:4633..5505+ (Himanthalia elongata Himel1 dioecious)
GCTTACCTGTACGGTACACTCAGCTTTTTCGGGGGCATCCTGTTCTACAA ATGCATCGATTACGTTGTTCATTTCCTAGAAGGAAACGCTAGCCACCACG ACATCGATATCGAATTGTACGATCTCGAACAAAGTTCGCCGGACAACGGG ACATCGGCCGGGCGCAACAACTTCCGCGGCGGGGTGGTATCTGACCCATC TGCGTCGAGCGATGTTCTGAAGGGTGGCAAAGTCCAGCCAATTCAACAGC AGGAACACGACCAAAAGTCTTTGGACCTCGCCGAACCCGAGAAGGTATCA ACCGCAGGCGGAGTACAGTCGGCGATCGAGGAAGAAAAACGTGGAGGCGA GGGCGCGGGTCACGATGGCGCTGAGGCTGCGGTGGAGACCACAGTCCAAG CAGACGTGCCGGATGAAAAGCTCGTTCGAATGGGGCTAATGACCGCGCTT GCGATCGGGATTCATAACTTCCCGGAGGGGGTGGCAACGTTTGTGGCGAC GCTTTCCGATCCTGTCGTGGGCGCCGCGCTCGCAGTGGCCATCGCTATCC ACAATATCCCCGAGGGGCTGTGCGTGGCCATCCCCGTGTACTACGCGACG GGCAACCGCTGGAAGGCATTTGGGTGGGCGTTTCTGTCCGGGATAAGTGA GCCCATCGGCGCCGGACTCGCGTGGCTGATCCTGAAGGATACCATGACCG AGATGGTGTATGGTATTCTGTTCGGTGTAGTGGCAGGTATGATGGTGATC ATCTCGCTCCAGGAGCTCATCCCAACCGCTGTCCGGTACGATCCCACTGA CAGTGTCACGACGAACTCAATCATCGCTGGAATGATAATTATGGCTTTGA GCCTCATCCTGTTCCTTTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig19382:4633..5505+

>mRNA_H-elongata_contig19382.5380.1 ID=mRNA_H-elongata_contig19382.5380.1|Name=mRNA_H-elongata_contig19382.5380.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig19382:4633..5505+ (Himanthalia elongata Himel1 dioecious)
GCTTACCTGTACGGTACACTCAGCTTTTTCGGGGGCATCCTGTTCTACAA
ATGCATCGATTACGTTGTTCATTTCCTAGAAGGAAACGCTAGCCACCACG
ACATCGATATCGAATTGTACGATCTCGAACAAAGTTCGCCGGACAACGGG
ACATCGGCCGGGCGCAACAACTTCCGCGGCGGGGTGGTATCTGACCCATC
TGCGTCGAGCGATGTTCTGAAGGGTGGCAAAGTCCAGCCAATTCAACAGC
AGGAACACGACCAAAAGTCTTTGGACCTCGCCGAACCCGAGAAGGTATCA
ACCGCAGGCGGAGTACAGTCGGCGATCGAGGAAGAAAAACGTGGAGGCGA
GGGCGCGGGTCACGATGGCGCTGAGGCTGCGGTGGAGACCACAGTCCAAG
CAGACGTGCCGGATGAAAAGCTCGTTCGAATGGGGCTAATGACCGCGCTT
GCGATCGGGATTCATAACTTCCCGGAGGGGGTGGCAACGTTTGTGGCGAC
GCTTTCCGATCCTGTCGTGGGCGCCGCGCTCGCAGTGGCCATCGCTATCC
ACAATATCCCCGAGGGGCTGTGCGTGGCCATCCCCGTGTACTACGCGACG
GGCAACCGCTGGAAGGCATTTGGGTGGGCGTTTCTGTCCGGGATAAGTGA
GCCCATCGGCGCCGGACTCGCGTGGCTGATCCTGAAGGATACCATGACCG
AGATGGTGTATGGTATTCTGTTCGGTGTAGTGGCAGGTATGATGGTGATC
ATCTCGCTCCAGGAGCTCATCCCAACCGCTGTCCGGTACGATCCCACTGA
CAGTGTCACGACGAACTCAATCATCGCTGGAATGATAATTATGGCTTTGA
GCCTCATCCTGTTCCTTTACTGAGCTTACCTGTACGGTACACTCAGCTTT
TTCGGGGGCATCCTGTTCTACAAATGCATCGATTACGTTGTTCATTTCCT
AGAAGGAAACGCTAGCCACCACGACATCGATATCGAATTGTACGATCTCG
AACAAAGTTCGCCGGACAACGGGACATCGGCCGGGCGCAACAACTTCCGC
GGCGGGGTGGTATCTGACCCATCTGCGTCGAGCGATGTTCTGAAGGGTGG
CAAAGTCCAGCCAATTCAACAGCAGGAACACGACCAAAAGTCTTTGGACC
TCGCCGAACCCGAGAAGGTATCAACCGCAGGCGGAGTACAGTCGGCGATC
GAGGAAGAAAAACGTGGAGGCGAGGGCGCGGGTCACGATGGCGCTGAGGC
TGCGGTGGAGACCACAGTCCAAGCAGACGTGCCGGATGAAAAGCTCGTTC
GAATGGGGCTAATGACCGCGCTTGCGATCGGGATTCATAACTTCCCGGAG
GGGGTGGCAACGTTTGTGGCGACGCTTTCCGATCCTGTCGTGGGCGCCGC
GCTCGCAGTGGCCATCGCTATCCACAATATCCCCGAGGGGCTGTGCGTGG
CCATCCCCGTGTACTACGCGACGGGCAACCGCTGGAAGGCATTTGGGTGG
GCGTTTCTGTCCGGGATAAGTGAGCCCATCGGCGCCGGACTCGCGTGGCT
GATCCTGAAGGATACCATGACCGAGATGGTGTATGGTATTCTGTTCGGTG
TAGTGGCAGGTATGATGGTGATCATCTCGCTCCAGGAGCTCATCCCAACC
GCTGTCCGGTACGATCCCACTGACAGTGTCACGACGAACTCAATCATCGC
TGGAATGATAATTATGGCTTTGAGCCTCATCCTGTTCCTTTACTGA
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