mRNA_H-elongata_contig193715.5377.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193715.5377.1
Unique NamemRNA_H-elongata_contig193715.5377.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193715.5377.1 vs. uniprot
Match: D8LDX3_ECTSI (Exocyst subunit Exo70 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX3_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.050e-20
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 MGAEKEILDAPSLASGVETLRSGLVGFGSTTGQMKSIFEDFEGRLNKLEGEMLPMKNISAKLTLARCNITSAITKV 228
            MGAEKEI++A +LA GVE L +GL  F S+T QMK I EDFEGRL KLE EMLPMK ISAKL+ +R NI SAI K+
Sbjct:    1 MGAEKEIVNAAALAKGVEILGAGLTSFESSTRQMKGICEDFEGRLGKLEREMLPMKEISAKLSTSRRNIISAIEKM 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193715.5377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDX3_ECTSI2.050e-2067.11Exocyst subunit Exo70 family protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193715contigH-elongata_contig193715:378..629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.32834-CDS-H-elongata_contig193715:377..6291622930103.32834-CDS-H-elongata_contig193715:377..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193715 378..629 -
1691679281.286019-CDS-H-elongata_contig193715:377..6291691679281.286019-CDS-H-elongata_contig193715:377..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193715 378..629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193715.5377.1prot_H-elongata_contig193715.5377.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193715 378..629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193715.5377.1

>prot_H-elongata_contig193715.5377.1 ID=prot_H-elongata_contig193715.5377.1|Name=mRNA_H-elongata_contig193715.5377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MGAEKEILDAPSLASGVETLRSGLVGFGSTTGQMKSIFEDFEGRLNKLEG
EMLPMKNISAKLTLARCNITSAITKVPPCMRPI*
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mRNA from alignment at H-elongata_contig193715:378..629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193715.5377.1 ID=mRNA_H-elongata_contig193715.5377.1|Name=mRNA_H-elongata_contig193715.5377.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig193715:378..629- (Himanthalia elongata Himel1 dioecious)
ATGGGGGCGGAGAAGGAGATACTGGACGCTCCGTCGCTAGCTTCGGGCGT
GGAGACCCTGCGAAGTGGATTAGTAGGCTTTGGGTCAACAACAGGACAGA
TGAAGTCAATCTTCGAAGACTTCGAGGGGAGACTGAACAAGCTAGAGGGC
GAAATGCTTCCCATGAAGAACATCAGCGCCAAGCTTACCCTGGCACGATG
CAACATTACGAGTGCCATCACGAAGGTACCTCCGTGCATGAGACCGATTT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig193715:378..629-

>mRNA_H-elongata_contig193715.5377.1 ID=mRNA_H-elongata_contig193715.5377.1|Name=mRNA_H-elongata_contig193715.5377.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig193715:378..629- (Himanthalia elongata Himel1 dioecious)
ATGGGGGCGGAGAAGGAGATACTGGACGCTCCGTCGCTAGCTTCGGGCGT
GGAGACCCTGCGAAGTGGATTAGTAGGCTTTGGGTCAACAACAGGACAGA
TGAAGTCAATCTTCGAAGACTTCGAGGGGAGACTGAACAAGCTAGAGGGC
GAAATGCTTCCCATGAAGAACATCAGCGCCAAGCTTACCCTGGCACGATG
CAACATTACGAGTGCCATCACGAAGGTACCTCCGTGCATGAGACCGATTT
GAATGGGGGCGGAGAAGGAGATACTGGACGCTCCGTCGCTAGCTTCGGGC
GTGGAGACCCTGCGAAGTGGATTAGTAGGCTTTGGGTCAACAACAGGACA
GATGAAGTCAATCTTCGAAGACTTCGAGGGGAGACTGAACAAGCTAGAGG
GCGAAATGCTTCCCATGAAGAACATCAGCGCCAAGCTTACCCTGGCACGA
TGCAACATTACGAGTGCCATCACGAAGGTACCTCCGTGCATGAGACCGAT
TTGA
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