mRNA_H-elongata_contig193609.5373.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193609.5373.1
Unique NamemRNA_H-elongata_contig193609.5373.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193609.5373.1 vs. uniprot
Match: D8LHM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM7_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.510e-5
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  277 SLGILADDDLFAELGIEAKPTFSGKKA-PRSTASRASRLAASEAT 408
            ++GILADDDLFAELGIEAKPTF  KK  P   A R+  L ASEAT
Sbjct: 1650 TIGILADDDLFAELGIEAKPTFREKKPRPGQAADRSLALQASEAT 1694
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193609.5373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHM7_ECTSI1.510e-568.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193609contigH-elongata_contig193609:93..775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930102.8903918-CDS-H-elongata_contig193609:92..1881622930102.8903918-CDS-H-elongata_contig193609:92..188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193609 93..188 -
1691679281.0424774-CDS-H-elongata_contig193609:92..1881691679281.0424774-CDS-H-elongata_contig193609:92..188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193609 93..188 -
1622930102.9070184-CDS-H-elongata_contig193609:463..7751622930102.9070184-CDS-H-elongata_contig193609:463..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193609 464..775 -
1691679281.053366-CDS-H-elongata_contig193609:463..7751691679281.053366-CDS-H-elongata_contig193609:463..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193609 464..775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193609.5373.1prot_H-elongata_contig193609.5373.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193609 93..775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193609.5373.1

>prot_H-elongata_contig193609.5373.1 ID=prot_H-elongata_contig193609.5373.1|Name=mRNA_H-elongata_contig193609.5373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
VDTSNAAESSDNWGWDGEEEEDIEMPTVKPTARTVSSHGRNPGLGGVSDG
SSGDNILAPIKASAGAAAASRPRPEAKRGRRPVGDRGGGQAESLGILADD
DLFAELGIEAKPTFSGKKAPRSTASRASRLAASEAT
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mRNA from alignment at H-elongata_contig193609:93..775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193609.5373.1 ID=mRNA_H-elongata_contig193609.5373.1|Name=mRNA_H-elongata_contig193609.5373.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at H-elongata_contig193609:93..775- (Himanthalia elongata Himel1 dioecious)
GTCGACACGTCAAACGCCGCGGAATCATCGGACAATTGGGGCTGGGACGG
TGAGGAGGAAGAAGACATTGAGATGCCTACGGTGAAGCCAACGGCGCGGA
CGGTGTCCTCCCACGGCCGCAACCCTGGGCTGGGCGGGGTGTCTGATGGA
TCAAGCGGTGATAATATCCTCGCACCGATAAAGGCCTCCGCGGGCGCCGC
TGCCGCCTCCAGGCCGAGGCCCGAGGCAAAGAGGGGCAGACGCCCCGTGG
GCGATCGGGGCGGCGGGCAGGCGGAATCCCTCGGCATTCTAGCGGACGAC
GACCTCTTCGCGGTGAGTGGATTTTGTGTGTTAATAATAATGTCGCGCTC
TGCCGCGCGTGCGCGGCGTAATTCGCGTTTGATAGGAATATCCCGCGGTG
GAGATCGCCTTTGCTCCCGGCGTGTCGCTGTTCGCCCTCTTAATGGGAGA
AAATCCAAGAAACATACGTAACAACCTTTCGTACTAAGAAAAAAGTTAAG
ATATTTTTCTCGCCGCCCTGATTGGTTCTCATGATGTTGAGCACCCTTCT
CACCCCTCCCTCCTTCCTCGCTCGCTCAAACGTACAGGAGCTCGGCATCG
AAGCGAAGCCGACCTTTTCCGGAAAGAAGGCCCCGCGCTCAACTGCCAGC
CGAGCTTCGCGCTTGGCAGCCTCTGAAGCCACG
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Coding sequence (CDS) from alignment at H-elongata_contig193609:93..775-

>mRNA_H-elongata_contig193609.5373.1 ID=mRNA_H-elongata_contig193609.5373.1|Name=mRNA_H-elongata_contig193609.5373.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig193609:93..775- (Himanthalia elongata Himel1 dioecious)
GTCGACACGTCAAACGCCGCGGAATCATCGGACAATTGGGGCTGGGACGG
TGAGGAGGAAGAAGACATTGAGATGCCTACGGTGAAGCCAACGGCGCGGA
CGGTGTCCTCCCACGGCCGCAACCCTGGGCTGGGCGGGGTGTCTGATGGA
TCAAGCGGTGATAATATCCTCGCACCGATAAAGGCCTCCGCGGGCGCCGC
TGCCGCCTCCAGGCCGAGGCCCGAGGCAAAGAGGGGCAGACGCCCCGTGG
GCGATCGGGGCGGCGGGCAGGCGGAATCCCTCGGCATTCTAGCGGACGAC
GACCTCTTCGCGGTCGACACGTCAAACGCCGCGGAATCATCGGACAATTG
GGGCTGGGACGGTGAGGAGGAAGAAGACATTGAGATGCCTACGGTGAAGC
CAACGGCGCGGACGGTGTCCTCCCACGGCCGCAACCCTGGGCTGGGCGGG
GTGTCTGATGGATCAAGCGGTGATAATATCCTCGCACCGATAAAGGCCTC
CGCGGGCGCCGCTGCCGCCTCCAGGCCGAGGCCCGAGGCAAAGAGGGGCA
GACGCCCCGTGGGCGATCGGGGCGGCGGGCAGGCGGAATCCCTCGGCATT
CTAGCGGACGACGACCTCTTCGCGGAGCTCGGCATCGAAGCGAAGCCGAC
CTTTTCCGGAAAGAAGGCCCCGCGCTCAACTGCCAGCCGAGCTTCGCGCT
TGGCAGCCTCTGAAGCCACGGAGCTCGGCATCGAAGCGAAGCCGACCTTT
TCCGGAAAGAAGGCCCCGCGCTCAACTGCCAGCCGAGCTTCGCGCTTGGC
AGCCTCTGAAGCCACG
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