mRNA_H-elongata_contig193400.5366.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193400.5366.1
Unique NamemRNA_H-elongata_contig193400.5366.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193400.5366.1 vs. uniprot
Match: D8LMH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.880e-19
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 LSAESIAVRCYTILFCLLVVFAEMEWTSTVREMFALHSWIPRGVLYS 141
            LS ES+AVRCY ILFC+L++ AE+EWT+TVREMF LHSWIPRGV+YS
Sbjct:   47 LSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYS 93
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BLAST of mRNA_H-elongata_contig193400.5366.1 vs. uniprot
Match: A0A6H5JBP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.940e-19
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 LSAESIAVRCYTILFCLLVVFAEMEWTSTVREMFALHSWIPRGVLYS 141
            LS ES+AVRCY ILFC+L++ AE+EWT+TVREMF LHSWIPRGV+YS
Sbjct:  102 LSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYS 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193400.5366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMH6_ECTSI1.880e-1976.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBP3_9PHAE5.940e-1976.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193400contigH-elongata_contig193400:996..1142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog2880.D8LMH6
EggNOG free text desc.COPI associated protein
EggNOG OGs2C5ZJ@1,2SE8F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-05_002800.1
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930102.1981754-CDS-H-elongata_contig193400:995..11421622930102.1981754-CDS-H-elongata_contig193400:995..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193400 996..1142 -
1691679280.773377-CDS-H-elongata_contig193400:995..11421691679280.773377-CDS-H-elongata_contig193400:995..1142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193400 996..1142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193400.5366.1prot_H-elongata_contig193400.5366.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193400 996..1142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193400.5366.1

>prot_H-elongata_contig193400.5366.1 ID=prot_H-elongata_contig193400.5366.1|Name=mRNA_H-elongata_contig193400.5366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
LSAESIAVRCYTILFCLLVVFAEMEWTSTVREMFALHSWIPRGVLYSL*
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mRNA from alignment at H-elongata_contig193400:996..1142-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193400.5366.1 ID=mRNA_H-elongata_contig193400.5366.1|Name=mRNA_H-elongata_contig193400.5366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig193400:996..1142- (Himanthalia elongata Himel1 dioecious)
CTGTCAGCGGAGTCTATCGCAGTCCGGTGCTATACTATCCTGTTCTGCCT
GTTGGTGGTCTTTGCCGAGATGGAATGGACGTCGACCGTTCGAGAAATGT
TCGCCCTCCATTCATGGATACCAAGGGGTGTCCTCTACTCATTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig193400:996..1142-

>mRNA_H-elongata_contig193400.5366.1 ID=mRNA_H-elongata_contig193400.5366.1|Name=mRNA_H-elongata_contig193400.5366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig193400:996..1142- (Himanthalia elongata Himel1 dioecious)
CTGTCAGCGGAGTCTATCGCAGTCCGGTGCTATACTATCCTGTTCTGCCT
GTTGGTGGTCTTTGCCGAGATGGAATGGACGTCGACCGTTCGAGAAATGT
TCGCCCTCCATTCATGGATACCAAGGGGTGTCCTCTACTCATTGTGACTG
TCAGCGGAGTCTATCGCAGTCCGGTGCTATACTATCCTGTTCTGCCTGTT
GGTGGTCTTTGCCGAGATGGAATGGACGTCGACCGTTCGAGAAATGTTCG
CCCTCCATTCATGGATACCAAGGGGTGTCCTCTACTCATTGTGA
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