mRNA_H-elongata_contig193387.5364.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193387.5364.1
Unique NamemRNA_H-elongata_contig193387.5364.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193387.5364.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.370e-8
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   13 LCRCYWEAGDDLRADRKYCFNTLLKAAKFDP 105
            L RCYWE G   R DRKYCFN+LLKAAK DP
Sbjct:  531 LARCYWEVGGLYREDRKYCFNSLLKAAKLDP 561
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BLAST of mRNA_H-elongata_contig193387.5364.1 vs. uniprot
Match: A0A6H5JAD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.400e-8
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   13 LCRCYWEAGDDLRADRKYCFNTLLKAAKFDP 105
            L RCYWE G   R DRKYCFN+LLKAAK DP
Sbjct:  706 LARCYWEVGGLYREDRKYCFNSLLKAAKLDP 736
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193387.5364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G059_ECTSI6.370e-874.19Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JAD5_9PHAE6.400e-874.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193387contigH-elongata_contig193387:746..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930101.9494784-CDS-H-elongata_contig193387:745..8501622930101.9494784-CDS-H-elongata_contig193387:745..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193387 746..850 -
1691679280.663917-CDS-H-elongata_contig193387:745..8501691679280.663917-CDS-H-elongata_contig193387:745..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193387 746..850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193387.5364.1prot_H-elongata_contig193387.5364.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193387 746..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193387.5364.1

>prot_H-elongata_contig193387.5364.1 ID=prot_H-elongata_contig193387.5364.1|Name=mRNA_H-elongata_contig193387.5364.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
MSGWLCRCYWEAGDDLRADRKYCFNTLLKAAKFDP
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mRNA from alignment at H-elongata_contig193387:746..850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193387.5364.1 ID=mRNA_H-elongata_contig193387.5364.1|Name=mRNA_H-elongata_contig193387.5364.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig193387:746..850- (Himanthalia elongata Himel1 dioecious)
ATGTCTGGCTGGCTCTGCAGGTGCTACTGGGAGGCCGGCGATGATCTCCG
AGCCGATCGGAAGTACTGCTTTAACACCTTACTCAAGGCGGCTAAGTTCG
ATCCC
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Coding sequence (CDS) from alignment at H-elongata_contig193387:746..850-

>mRNA_H-elongata_contig193387.5364.1 ID=mRNA_H-elongata_contig193387.5364.1|Name=mRNA_H-elongata_contig193387.5364.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig193387:746..850- (Himanthalia elongata Himel1 dioecious)
ATGTCTGGCTGGCTCTGCAGGTGCTACTGGGAGGCCGGCGATGATCTCCG
AGCCGATCGGAAGTACTGCTTTAACACCTTACTCAAGGCGGCTAAGTTCG
ATCCCATGTCTGGCTGGCTCTGCAGGTGCTACTGGGAGGCCGGCGATGAT
CTCCGAGCCGATCGGAAGTACTGCTTTAACACCTTACTCAAGGCGGCTAA
GTTCGATCCC
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