mRNA_H-elongata_contig193228.5356.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: D7FIE7_ECTSI (DEP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE7_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.230e-28 Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 1
Query: 1 GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMISTLVDIGVSPFDEHNAELLDNVHPAKWKDAEPDG 219
G+++SWT LASRLFPTT+G E+ Q++L+AVVSRDADMI+TLV+IGVSP D++N ELLDNVHPA W DAEPDG
Sbjct: 116 GKKDSWTALASRLFPTTSGQESR-QADLEAVVSRDADMINTLVEIGVSPIDQYNTELLDNVHPANWVDAEPDG 187
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A836CF07_9STRA (Mercuric reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF07_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.350e-10 Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 1 GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMISTLVDIGVSPFDEHNAELLDNVHPAKWKDAEPDG 219
G SW L LFP AG Q++L +V+RDA +T + +GVSP DE+N LLDNVHP W D DG
Sbjct: 99 GTAVSWRHLTQSLFP--AGDGDTMQTDLSGIVNRDASFEATELAVGVSPLDEYNTTLLDNVHPPAWIDPPGDG 169
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: UPI001E28D820 (FAD-containing oxidoreductase n=1 Tax=Desulfosediminicola ganghwensis TaxID=2569540 RepID=UPI001E28D820) HSP 1 Score: 55.8 bits (133), Expect = 2.450e-7 Identity = 33/72 (45.83%), Postives = 39/72 (54.17%), Query Frame = 1
Query: 7 QESWTKLASRLFPTTAG--AETFFQSNLDAVVSRDADMIST-LVDIGVSPFDEHNAELLDNVHPAKWKDAEP 213
QESW K A L AG E Q L A M L ++G+SP DE+NA+LLDNVHP W+D EP
Sbjct: 108 QESWVKWADFLSSGGAGRRGEKVLQPTLPEPDVNLASMDQVCLEEVGISPLDEYNAQLLDNVHPRAWRDPEP 179
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A353NF73_9DELT (FAD-containing oxidoreductase n=2 Tax=Bacteria TaxID=2 RepID=A0A353NF73_9DELT) HSP 1 Score: 52.8 bits (125), Expect = 3.000e-6 Identity = 32/75 (42.67%), Postives = 39/75 (52.00%), Query Frame = 1
Query: 1 GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMIST----LVDIGVSPFDEHNAELLDNVHPAKWKDAEP 213
G W + + +T GA+ Q L DAD+ + L IGVSP DEHNA LLDNVHP +W D EP
Sbjct: 115 GSSVKWADFLT-ILTSTNGADGSLQPTLP---EPDADLANMDQIDLEAIGVSPLDEHNAMLLDNVHPKRWLDPEP 185
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A7Y3AFA7_9DELT (FAD-containing oxidoreductase n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3AFA7_9DELT) HSP 1 Score: 50.1 bits (118), Expect = 2.690e-5 Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query: 124 LVDIGVSPFDEHNAELLDNVHPAKWKDAEP 213
L IG+ P D+HNA+LLDNVHP KW D EP
Sbjct: 156 LAQIGLYPLDQHNAQLLDNVHPKKWTDPEP 185
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A525D6D9_9DELT (FAD-containing oxidoreductase (Fragment) n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A525D6D9_9DELT) HSP 1 Score: 49.7 bits (117), Expect = 3.660e-5 Identity = 31/75 (41.33%), Postives = 39/75 (52.00%), Query Frame = 1
Query: 1 GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMISTLVD----IGVSPFDEHNAELLDNVHPAKWKDAEP 213
GEQ S + A L T+ +S + DAD+ D +GV+P DEHNA LLDNVHP KW D +P
Sbjct: 50 GEQGSLVRWADFLGKITSPPGD--ESLQPGIPGPDADLGDMAQDDLAAVGVTPLDEHNATLLDNVHPKKWLDPDP 122
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Match: A0A7S4E0S5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E0S5_9EUKA) HSP 1 Score: 49.7 bits (117), Expect = 3.680e-5 Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 1
Query: 13 SWTKLASRLFPTTAGAETFFQSNLDAVV--SRDADMISTLVDIGVSPFDEHNAELLDNVHPAKWKDAEPD 216
+WTKL + T+G + S + A+ D D L + +SP D+ N ELL+NVHP KWKD + D
Sbjct: 119 TWTKLFQGIGGNTSGEASHQPSMVSALALGEIDPDARDKLQKLEISPLDKWNTELLENVHPLKWKDPKGD 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193228.5356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig193228.5356.1 >prot_H-elongata_contig193228.5356.1 ID=prot_H-elongata_contig193228.5356.1|Name=mRNA_H-elongata_contig193228.5356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp GEQESWTKLASRLFPTTAGAETFFQSNLDAVVSRDADMISTLVDIGVSPFback to top mRNA from alignment at H-elongata_contig193228:129..347- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig193228.5356.1 ID=mRNA_H-elongata_contig193228.5356.1|Name=mRNA_H-elongata_contig193228.5356.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig193228:129..347- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig193228:129..347- >mRNA_H-elongata_contig193228.5356.1 ID=mRNA_H-elongata_contig193228.5356.1|Name=mRNA_H-elongata_contig193228.5356.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig193228:129..347- (Himanthalia elongata Himel1 dioecious)back to top |