mRNA_H-elongata_contig193130.5351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193130.5351.1
Unique NamemRNA_H-elongata_contig193130.5351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig193130.5351.1 vs. uniprot
Match: D7FP17_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP17_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.100e-11
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   13 FSPGRLRLVVGGGGLAPFLHRAVRQMEPGEAKVVGVPPKEAFGE 144
            F  GR++LVVGGGG APFLH AV +MEPGE K V VPPK+AFGE
Sbjct:   54 FDQGRVKLVVGGGGFAPFLHNAVLKMEPGEEKEVTVPPKDAFGE 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193130.5351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP17_ECTSI3.100e-1172.73Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193130contigH-elongata_contig193130:833..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D7FP17
Preferred nameMSRA4
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,KOG1635@2759
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.5221832-CDS-H-elongata_contig193130:832..10271622930100.5221832-CDS-H-elongata_contig193130:832..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193130 833..1027 +
1691679280.103512-CDS-H-elongata_contig193130:832..10271691679280.103512-CDS-H-elongata_contig193130:832..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193130 833..1027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193130.5351.1prot_H-elongata_contig193130.5351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193130 833..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193130.5351.1

>prot_H-elongata_contig193130.5351.1 ID=prot_H-elongata_contig193130.5351.1|Name=mRNA_H-elongata_contig193130.5351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MVAGFSPGRLRLVVGGGGLAPFLHRAVRQMEPGEAKVVGVPPKEAFGERE
TKPSKHTLNLSLRK*
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mRNA from alignment at H-elongata_contig193130:833..1027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193130.5351.1 ID=mRNA_H-elongata_contig193130.5351.1|Name=mRNA_H-elongata_contig193130.5351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig193130:833..1027+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGCTGGGTTTTCGCCGGGGCGTCTACGGCTTGTCGTGGGCGGGGG
AGGTTTGGCGCCTTTCCTGCACCGAGCCGTGAGGCAAATGGAACCTGGCG
AGGCGAAGGTGGTCGGCGTTCCGCCCAAGGAGGCTTTCGGTGAACGTGAG
ACCAAGCCGAGCAAGCATACGCTTAATCTCTCGCTTCGGAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig193130:833..1027+

>mRNA_H-elongata_contig193130.5351.1 ID=mRNA_H-elongata_contig193130.5351.1|Name=mRNA_H-elongata_contig193130.5351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig193130:833..1027+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGCTGGGTTTTCGCCGGGGCGTCTACGGCTTGTCGTGGGCGGGGG
AGGTTTGGCGCCTTTCCTGCACCGAGCCGTGAGGCAAATGGAACCTGGCG
AGGCGAAGGTGGTCGGCGTTCCGCCCAAGGAGGCTTTCGGTGAACGTGAG
ACCAAGCCGAGCAAGCATACGCTTAATCTCTCGCTTCGGAAATAAATGGT
TGCTGGGTTTTCGCCGGGGCGTCTACGGCTTGTCGTGGGCGGGGGAGGTT
TGGCGCCTTTCCTGCACCGAGCCGTGAGGCAAATGGAACCTGGCGAGGCG
AAGGTGGTCGGCGTTCCGCCCAAGGAGGCTTTCGGTGAACGTGAGACCAA
GCCGAGCAAGCATACGCTTAATCTCTCGCTTCGGAAATAA
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