mRNA_H-elongata_contig19293.5338.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19293.5338.1
Unique NamemRNA_H-elongata_contig19293.5338.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19293.5338.1 vs. uniprot
Match: D7FZS2_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS2_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 9.930e-39
Identity = 122/323 (37.77%), Postives = 152/323 (47.06%), Query Frame = 1 
Query:   25 VAEVLAKAQSQRKKKGEATFCRPLPPPTFPWRVEIFSQVRKDSARQRKLLSVTAARDIVYAHHVNVYKNITAETYARKMDASRWVTGGFDVYRQRVAALSMDAKRYRGYKEAS--------------ILPRDS-VIKESVMDSSYSDIDGSVDIILPARS---------------ANKG------------------QAEFNDSEQISAPTRSAEDSTTLSTAELSGSANNKTARKVMIDQGSSDAS--MDVVPFFNVRAKYIRTWSDTALSRPYHVPPFPSWRAGESTHK-DVMTRVGSLPPSF-----VGSQRTLEAYRKT 825
            VA VLAK  S  K+   AT       P  PW +EIF+QVR D+ARQRKL  V+ AR+ VYA + N+YK+  A TYAR ++ASR   GG + YR+RV   S DA+RYRGY E                +LP D      +   SS     GSV    P+RS               A +G                  +    D  +  AP  S  DS T          N  T R+     G       +DVVPF N+RAKY+R W+DT LSRPYHV P P+WRA  +     + + VGS   S       GS +TLEAYRKT
Sbjct:  152 VAAVLAKDYSVLKEGEGATKGASAALPPAPWHIEIFAQVRLDTARQRKLHGVSVAREGVYARYANIYKDHAARTYARTIEASRQERGGLEAYRRRVVKASTDAERYRGYVEMDTPRDDPHWEEDGLGLLPADGGSTSTNYAASSNGRESGSVAGFSPSRSSANVDVSLSSEKEDGAGRGLVHGDETARRWPVDRAAPECSMGDGGEPEAPAVSRLDSVT-------DDENTATTRRSFDHGGGGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRADRAVGTPSLASSVGSSITSTDAFSAAGSGQTLEAYRKT 467
[Close]
BLAST of mRNA_H-elongata_contig19293.5338.1 vs. uniprot
Match: A0A6H5KP45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP45_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.430e-11
Identity = 43/93 (46.24%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:  568 NNKTARKVMIDQGSSDAS--MDVVPFFNVRAKYIRTWSDTALSRPYHVPPFPSWRAGESTHK-DVMTRVGSLPPSF-----VGSQRTLEAYRK 822
            N  T R+   D G       +DVVPF N+RAKY+R W+DT LSRPYHV P P+WRAG +     + + VGS   S        S + LEAYRK
Sbjct:  192 NTATTRRSFSDGGIGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRAGRAVGAPSLASSVGSSITSTDALSAAESGQALEAYRK 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19293.5338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZS2_ECTSI9.930e-3937.77Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KP45_9PHAE5.430e-1146.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19293contigH-elongata_contig19293:4317..5395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue2.6e-35
Seed eggNOG ortholog2880.D7FZS2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-21_004140.1
Exons2
Model size849
Cds size849
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930099.158356-CDS-H-elongata_contig19293:4316..44541622930099.158356-CDS-H-elongata_contig19293:4316..4454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19293 4317..4454 +
1691679279.5331564-CDS-H-elongata_contig19293:4316..44541691679279.5331564-CDS-H-elongata_contig19293:4316..4454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19293 4317..4454 +
1622930099.1781685-CDS-H-elongata_contig19293:4684..53951622930099.1781685-CDS-H-elongata_contig19293:4684..5395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19293 4685..5395 +
1691679279.5479848-CDS-H-elongata_contig19293:4684..53951691679279.5479848-CDS-H-elongata_contig19293:4684..5395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19293 4685..5395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19293.5338.1prot_H-elongata_contig19293.5338.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19293 4317..5395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19293.5338.1

>prot_H-elongata_contig19293.5338.1 ID=prot_H-elongata_contig19293.5338.1|Name=mRNA_H-elongata_contig19293.5338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp
AEFRGFTEVAEVLAKAQSQRKKKGEATFCRPLPPPTFPWRVEIFSQVRKD
SARQRKLLSVTAARDIVYAHHVNVYKNITAETYARKMDASRWVTGGFDVY
RQRVAALSMDAKRYRGYKEASILPRDSVIKESVMDSSYSDIDGSVDIILP
ARSANKGQAEFNDSEQISAPTRSAEDSTTLSTAELSGSANNKTARKVMID
QGSSDASMDVVPFFNVRAKYIRTWSDTALSRPYHVPPFPSWRAGESTHKD
VMTRVGSLPPSFVGSQRTLEAYRKTREQARQN*
back to top

mRNA from alignment at H-elongata_contig19293:4317..5395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19293.5338.1 ID=mRNA_H-elongata_contig19293.5338.1|Name=mRNA_H-elongata_contig19293.5338.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1079bp|location=Sequence derived from alignment at H-elongata_contig19293:4317..5395+ (Himanthalia elongata Himel1 dioecious)
GCAGAATTTCGAGGTTTTACGGAGGTTGCTGAGGTGCTAGCCAAGGCTCA
ATCCCAACGCAAGAAGAAGGGTGAAGCGACATTTTGCAGACCACTCCCCC
CCCCCACCTTTCCTTGGCGCGTCGAAATCTTCTCGCAGGTACTGACCTCA
TCGAAAGTGTTTCGAGAGTGGCATCTTGGTATTATACTCCGGCATCAGGT
CTTGCTTGTTGGTGAACCGCGAAATTCTAGACGTTCAAAAGCTAGCTCCT
GAGCGCGATTTCTCTGAACAAATACGTTGCAGTAGTCGCCTAAACCTTGT
GCTTTTCTACAGGAAATATTTACACCCTATATCTCCCCCGACGAGCGAGC
GCTCGACTCATGTTTCAGGTCCGTAAGGATAGCGCGAGGCAACGGAAGCT
CCTCTCTGTCACAGCCGCGCGTGATATAGTGTATGCCCATCACGTGAACG
TTTACAAGAACATTACCGCGGAAACCTATGCGCGGAAGATGGATGCGTCC
CGATGGGTAACGGGTGGTTTCGATGTATACCGCCAGCGCGTCGCTGCGTT
ATCGATGGACGCTAAGCGTTACAGAGGGTATAAGGAGGCGAGTATATTGC
CTCGTGATTCGGTTATAAAGGAAAGCGTCATGGACTCCTCCTATTCAGAC
ATTGACGGATCAGTAGACATAATTCTGCCAGCGCGGAGTGCTAATAAAGG
GCAGGCTGAGTTCAACGACTCAGAACAAATATCTGCGCCAACGAGGTCCG
CTGAAGATTCGACGACATTATCGACTGCAGAATTATCAGGATCAGCCAAC
AACAAGACAGCGCGGAAAGTCATGATAGATCAAGGGTCAAGCGATGCGTC
TATGGACGTGGTTCCTTTCTTCAATGTACGTGCCAAATATATCAGGACAT
GGAGCGACACCGCCTTGTCCAGGCCGTACCATGTTCCACCCTTTCCAAGT
TGGAGGGCGGGGGAAAGTACTCACAAGGACGTTATGACGCGGGTCGGGTC
CTTGCCTCCGTCGTTTGTTGGGAGCCAGAGGACGTTGGAGGCCTATCGCA
AGACTAGAGAACAAGCCCGGCAGAACTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19293:4317..5395+

>mRNA_H-elongata_contig19293.5338.1 ID=mRNA_H-elongata_contig19293.5338.1|Name=mRNA_H-elongata_contig19293.5338.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig19293:4317..5395+ (Himanthalia elongata Himel1 dioecious)
GCAGAATTTCGAGGTTTTACGGAGGTTGCTGAGGTGCTAGCCAAGGCTCA
ATCCCAACGCAAGAAGAAGGGTGAAGCGACATTTTGCAGACCACTCCCCC
CCCCCACCTTTCCTTGGCGCGTCGAAATCTTCTCGCAGGCAGAATTTCGA
GGTTTTACGGAGGTTGCTGAGGTGCTAGCCAAGGCTCAATCCCAACGCAA
GAAGAAGGGTGAAGCGACATTTTGCAGACCACTCCCCCCCCCCACCTTTC
CTTGGCGCGTCGAAATCTTCTCGCAGGTCCGTAAGGATAGCGCGAGGCAA
CGGAAGCTCCTCTCTGTCACAGCCGCGCGTGATATAGTGTATGCCCATCA
CGTGAACGTTTACAAGAACATTACCGCGGAAACCTATGCGCGGAAGATGG
ATGCGTCCCGATGGGTAACGGGTGGTTTCGATGTATACCGCCAGCGCGTC
GCTGCGTTATCGATGGACGCTAAGCGTTACAGAGGGTATAAGGAGGCGAG
TATATTGCCTCGTGATTCGGTTATAAAGGAAAGCGTCATGGACTCCTCCT
ATTCAGACATTGACGGATCAGTAGACATAATTCTGCCAGCGCGGAGTGCT
AATAAAGGGCAGGCTGAGTTCAACGACTCAGAACAAATATCTGCGCCAAC
GAGGTCCGCTGAAGATTCGACGACATTATCGACTGCAGAATTATCAGGAT
CAGCCAACAACAAGACAGCGCGGAAAGTCATGATAGATCAAGGGTCAAGC
GATGCGTCTATGGACGTGGTTCCTTTCTTCAATGTACGTGCCAAATATAT
CAGGACATGGAGCGACACCGCCTTGTCCAGGCCGTACCATGTTCCACCCT
TTCCAAGTTGGAGGGCGGGGGAAAGTACTCACAAGGACGTTATGACGCGG
GTCGGGTCCTTGCCTCCGTCGTTTGTTGGGAGCCAGAGGACGTTGGAGGC
CTATCGCAAGACTAGAGAACAAGCCCGGCAGAACTAGGTCCGTAAGGATA
GCGCGAGGCAACGGAAGCTCCTCTCTGTCACAGCCGCGCGTGATATAGTG
TATGCCCATCACGTGAACGTTTACAAGAACATTACCGCGGAAACCTATGC
GCGGAAGATGGATGCGTCCCGATGGGTAACGGGTGGTTTCGATGTATACC
GCCAGCGCGTCGCTGCGTTATCGATGGACGCTAAGCGTTACAGAGGGTAT
AAGGAGGCGAGTATATTGCCTCGTGATTCGGTTATAAAGGAAAGCGTCAT
GGACTCCTCCTATTCAGACATTGACGGATCAGTAGACATAATTCTGCCAG
CGCGGAGTGCTAATAAAGGGCAGGCTGAGTTCAACGACTCAGAACAAATA
TCTGCGCCAACGAGGTCCGCTGAAGATTCGACGACATTATCGACTGCAGA
ATTATCAGGATCAGCCAACAACAAGACAGCGCGGAAAGTCATGATAGATC
AAGGGTCAAGCGATGCGTCTATGGACGTGGTTCCTTTCTTCAATGTACGT
GCCAAATATATCAGGACATGGAGCGACACCGCCTTGTCCAGGCCGTACCA
TGTTCCACCCTTTCCAAGTTGGAGGGCGGGGGAAAGTACTCACAAGGACG
TTATGACGCGGGTCGGGTCCTTGCCTCCGTCGTTTGTTGGGAGCCAGAGG
ACGTTGGAGGCCTATCGCAAGACTAGAGAACAAGCCCGGCAGAACTAG
back to top