mRNA_H-elongata_contig192842.5336.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig192842.5336.1
Unique NamemRNA_H-elongata_contig192842.5336.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192842.5336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192842contigH-elongata_contig192842:704..1087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.9136515-UTR-H-elongata_contig192842:703..7211622930098.9136515-UTR-H-elongata_contig192842:703..721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig192842 704..721 +
1691679279.405062-UTR-H-elongata_contig192842:703..7211691679279.405062-UTR-H-elongata_contig192842:703..721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig192842 704..721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.932621-CDS-H-elongata_contig192842:721..10871622930098.932621-CDS-H-elongata_contig192842:721..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192842 722..1087 +
1691679279.4193945-CDS-H-elongata_contig192842:721..10871691679279.4193945-CDS-H-elongata_contig192842:721..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192842 722..1087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192842.5336.1prot_H-elongata_contig192842.5336.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig192842 722..1087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig192842.5336.1

>prot_H-elongata_contig192842.5336.1 ID=prot_H-elongata_contig192842.5336.1|Name=mRNA_H-elongata_contig192842.5336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MRPGEDPDEFLYKKDRCRDRLNSVTPKEGPLNRQFEDIILQRLPPEYDRI
RHTHFVREDINLADLRRMMSKIYADNLARSNFNATKGIAGRGVAMKATGR
DLSTIQCYHCNKLGHFKSECAD
back to top

mRNA from alignment at H-elongata_contig192842:704..1087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig192842.5336.1 ID=mRNA_H-elongata_contig192842.5336.1|Name=mRNA_H-elongata_contig192842.5336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig192842:704..1087+ (Himanthalia elongata Himel1 dioecious)
GAAATTGAATCCGTAAAAATGCGGCCGGGCGAGGATCCAGATGAGTTCCT
TTACAAGAAAGACCGCTGCCGCGACCGCCTAAACTCTGTCACCCCCAAGG
AGGGCCCTTTGAACCGCCAGTTTGAGGACATCATCCTGCAGCGCCTTCCG
CCAGAATACGATCGAATCCGCCACACCCACTTCGTGAGGGAGGACATCAA
CCTTGCAGACCTTCGGCGGATGATGTCAAAGATTTACGCGGACAACCTCG
CTCGCTCAAACTTCAACGCGACAAAGGGCATCGCGGGACGTGGCGTCGCT
ATGAAAGCGACGGGACGAGATCTGAGCACTATCCAGTGCTACCACTGCAA
CAAGCTTGGCCATTTCAAGAGCGAGTGTGCCGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig192842:704..1087+

>mRNA_H-elongata_contig192842.5336.1 ID=mRNA_H-elongata_contig192842.5336.1|Name=mRNA_H-elongata_contig192842.5336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig192842:704..1087+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCCGGGCGAGGATCCAGATGAGTTCCTTTACAAGAAAGACCGCTG
CCGCGACCGCCTAAACTCTGTCACCCCCAAGGAGGGCCCTTTGAACCGCC
AGTTTGAGGACATCATCCTGCAGCGCCTTCCGCCAGAATACGATCGAATC
CGCCACACCCACTTCGTGAGGGAGGACATCAACCTTGCAGACCTTCGGCG
GATGATGTCAAAGATTTACGCGGACAACCTCGCTCGCTCAAACTTCAACG
CGACAAAGGGCATCGCGGGACGTGGCGTCGCTATGAAAGCGACGGGACGA
GATCTGAGCACTATCCAGTGCTACCACTGCAACAAGCTTGGCCATTTCAA
GAGCGAGTGTGCCGACATGCGGCCGGGCGAGGATCCAGATGAGTTCCTTT
ACAAGAAAGACCGCTGCCGCGACCGCCTAAACTCTGTCACCCCCAAGGAG
GGCCCTTTGAACCGCCAGTTTGAGGACATCATCCTGCAGCGCCTTCCGCC
AGAATACGATCGAATCCGCCACACCCACTTCGTGAGGGAGGACATCAACC
TTGCAGACCTTCGGCGGATGATGTCAAAGATTTACGCGGACAACCTCGCT
CGCTCAAACTTCAACGCGACAAAGGGCATCGCGGGACGTGGCGTCGCTAT
GAAAGCGACGGGACGAGATCTGAGCACTATCCAGTGCTACCACTGCAACA
AGCTTGGCCATTTCAAGAGCGAGTGTGCCGAC
back to top