mRNA_H-elongata_contig192814.5335.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig192814.5335.1
Unique NamemRNA_H-elongata_contig192814.5335.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig192814.5335.1 vs. uniprot
Match: A0A6H5KGT8_9PHAE (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGT8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.330e-14
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 RYQKEDYTIASPLGGGQIAAFEAITKRFIADGAPDEVNI 117
            RYQ EDYTIASPLGGG+I AFEAI KRF+ DGAPDEVN+
Sbjct:  310 RYQNEDYTIASPLGGGKIEAFEAIAKRFVEDGAPDEVNL 348
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BLAST of mRNA_H-elongata_contig192814.5335.1 vs. uniprot
Match: D7G1D4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D4_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.620e-6
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 RYQKEDYTIASPLGGGQIAAFEAITKRFIADGAPDEVNI 117
            +Y+  DY+IA P+   Q AAF AI KRF+ADGA DE+NI
Sbjct:  104 QYESGDYSIAKPIAS-QFAAFNAIVKRFVADGALDEINI 141
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BLAST of mRNA_H-elongata_contig192814.5335.1 vs. uniprot
Match: A0A6H5KIU5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIU5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 4.510e-6
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 RYQKEDYTIASPLGGGQIAAFEAITKRFIADGAPDEVNI 117
            +Y+  DY+IA P+   Q AAF AI KRF+ DGA DE+NI
Sbjct:   32 KYESGDYSIAKPIAS-QFAAFNAIVKRFVVDGALDEINI 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192814.5335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGT8_9PHAE6.330e-1482.05RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G1D4_ECTSI3.620e-658.97RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KIU5_9PHAE4.510e-656.41RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192814contigH-elongata_contig192814:755..877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-18_000030.1
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.8737628-CDS-H-elongata_contig192814:754..8771622930098.8737628-CDS-H-elongata_contig192814:754..877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192814 755..877 -
1691679279.3941445-CDS-H-elongata_contig192814:754..8771691679279.3941445-CDS-H-elongata_contig192814:754..877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192814 755..877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192814.5335.1prot_H-elongata_contig192814.5335.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig192814 755..877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig192814.5335.1

>prot_H-elongata_contig192814.5335.1 ID=prot_H-elongata_contig192814.5335.1|Name=mRNA_H-elongata_contig192814.5335.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
RYQKEDYTIASPLGGGQIAAFEAITKRFIADGAPDEVNIW*
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mRNA from alignment at H-elongata_contig192814:755..877-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig192814.5335.1 ID=mRNA_H-elongata_contig192814.5335.1|Name=mRNA_H-elongata_contig192814.5335.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig192814:755..877- (Himanthalia elongata Himel1 dioecious)
AGGTACCAGAAGGAGGACTACACGATAGCGTCGCCGCTGGGCGGTGGACA
GATCGCCGCTTTTGAAGCGATCACGAAGAGGTTTATCGCGGACGGCGCGC
CGGACGAGGTTAACATCTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig192814:755..877-

>mRNA_H-elongata_contig192814.5335.1 ID=mRNA_H-elongata_contig192814.5335.1|Name=mRNA_H-elongata_contig192814.5335.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig192814:755..877- (Himanthalia elongata Himel1 dioecious)
AGGTACCAGAAGGAGGACTACACGATAGCGTCGCCGCTGGGCGGTGGACA
GATCGCCGCTTTTGAAGCGATCACGAAGAGGTTTATCGCGGACGGCGCGC
CGGACGAGGTTAACATCTGGTGAAGGTACCAGAAGGAGGACTACACGATA
GCGTCGCCGCTGGGCGGTGGACAGATCGCCGCTTTTGAAGCGATCACGAA
GAGGTTTATCGCGGACGGCGCGCCGGACGAGGTTAACATCTGGTGA
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