mRNA_H-elongata_contig19257.5330.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19257.5330.1
Unique NamemRNA_H-elongata_contig19257.5330.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A7S4DK52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DK52_HETAK)

HSP 1 Score: 181 bits (458), Expect = 8.500e-50
Identity = 100/196 (51.02%), Postives = 127/196 (64.80%), Query Frame = 1
Query:  451 SISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILL-KDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYT 1035
            +++  M +A+ VPPV YF YLMAAGVGVPVSED L I+VGTLL  A FT   K+  V + Y GVV+SD++ YS G  FR G+  PLRRI + K+    S+   +A           + +RR+G++ G AERFA+G+RGP+ L CG  GVP   F AGVALGAL GT+P+QL  GY LR RP   AAI A   +YYT
Sbjct:   91 NLAGAMQSADKVPPVAYFGYLMAAGVGVPVSEDALCIWVGTLLPKAQFTLSRKIKSVLYLYTGVVLSDMVTYSAGVAFRNGMLQPLRRIFMPKNTDGLSSTSPMARAE--------QTVRRAGRWAGTAERFALGLRGPVCLACGALGVPPGTFLAGVALGAL-GTLPLQLGAGYLLRSRPDAAAAIAAGAAAYYT 277          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A0G4F5D7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5D7_VITBC)

HSP 1 Score: 170 bits (430), Expect = 1.620e-45
Identity = 97/214 (45.33%), Postives = 127/214 (59.35%), Query Frame = 1
Query:  451 SISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGS---KNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWL 1083
            SI  ++  A+ VP   YFLYLMAAG+G+PVSED L IFVGTLL   +  ++ +VA VA  YAGV +SD++ YSIG    RGL  P++  +    GD         G P  +   +  L R++ SG  VG  +R+ VGVR P+ L+CGFTGVP R FA+GV LG   GT+ +QLA+GYALR+ P     I A   +YY  G PL A      L+ 
Sbjct:   90 SIPELLERASTVPVPCYFLYLMAAGIGIPVSEDALCIFVGTLLPQPSSWSK-RVATVATLYAGVTVSDMLTYSIGVALERGLLEPIKHRIFPHHGD---------GWPPKNSLWERALRRVQSSGGAVGFVQRWMVGVRYPIALVCGFTGVPFRSFASGV-LGGAVGTLTVQLAIGYALRNNPKATGVIAAGIATYYMLGAPLAALASSVVLYF 292          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A8J9S1T7_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S1T7_9CHLO)

HSP 1 Score: 134 bits (338), Expect = 2.080e-32
Identity = 75/177 (42.37%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  463 VMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWC-YAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRP 990
            ++N   N  P+YY +Y+ AAG+G+P SED  +I+VG+ L    +    + A V +  Y GVV+SD++ + IG   R+GL  PL+  LL      S  I  AE          E++ +  KY+G  +RF++G RGP+ LL GFTGVP   FAAG +LGAL GT+PIQL +GY +R+ P
Sbjct:   72 IVNFIENADPLYYLVYMFAAGLGLPCSEDAFVIWVGSKLWRGVYGAWQQAAYVLFIVYVGVVVSDMLTFCIGLALRQGLLKPLKDKLLPK---NSASITKAE----------EKVTKWSKYIGAVQRFSLGFRGPLCLLSGFTGVPAAQFAAGASLGAL-GTMPIQLTIGYLMRNAP 234          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A7R9TA43_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TA43_9VIRI)

HSP 1 Score: 127 bits (320), Expect = 4.490e-30
Identity = 75/172 (43.60%), Postives = 98/172 (56.98%), Query Frame = 1
Query:  487 PPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTT----RHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRP 990
            PP  YF Y + AG+G+P SED ++ FVG LL  A   T    +     +A  Y GVV+SD++ Y IG    RGL   +RR+LL + G ++T            +  L  +R  G  VG  +RF VG+RGP+ L  GFTG+PL  FA G A+GA   TVP+QLA GY LRD P
Sbjct:   57 PPAAYFAYFLGAGIGLPFSEDAMVAFVGALLSRAWLGTAPLAQPAAQLLAVVYVGVVLSDVLTYVIGAALGRGLAPGMRRLLLPE-GSQAT------------ERALATVRSFGVAVGAVQRFCVGLRGPVCLAAGFTGMPLSKFALGAAIGASI-TVPLQLAAGYLLRDSP 214          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A5J4YD61_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YD61_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 3.670e-27
Identity = 80/233 (34.33%), Postives = 123/233 (52.79%), Query Frame = 1
Query:  442 GASSISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACV-AWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRP----ATVAAIGAAFISYYTFGPPLIATFGGATLWLSRRKRRPRDVRGGE 1125
            GA+S++  +  A   PP  Y +Y++AAG G+P SED L+++VG+ +    +     +A V +  Y GVV+SD++ + +G   ++G F  L+  L  +       I+V              I +  + +G  +RF++G RGP+ L+CGFTGVP   FA G A+GAL GT+P+QL +GY LR  P      +A + A  +     GP  IAT   AT      K +P   + GE
Sbjct:    4 GAASLAVFLETA---PPPLYLVYMLAAGFGIPCSEDALVVWVGSNILKGVYGGWQGIAYVLSIVYFGVVVSDMVTFFMGVALQKGFFKSLKNSLFSNSNSFDRAINV--------------INKRSRTIGAIQRFSLGFRGPLCLVCGFTGVPPTRFALGAAVGAL-GTMPLQLTVGYYLRHTPNPYLTALAVVSAPNLCGQLLGP--IAT---ATGLYFAGKEQPNQQKPGE 213          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A8J5X791_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X791_DIALT)

HSP 1 Score: 117 bits (294), Expect = 4.370e-26
Identity = 80/210 (38.10%), Postives = 104/210 (49.52%), Query Frame = 1
Query:  475 ANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSK---NILERIRRSGKYVGVAERFAVGVRGPMTLLCG-FTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWLSRR 1092
            ++++ P  YF YLM AG+GVP+SED L +  G++LG+     R +   VA  Y GVV+SD+  + IG      +   LRR                   P G       +  +  SG YVG   RF VG+R P+ L CG   GVPL  FAAG ALGAL  TVP QLALG ALR+R  +   + +   S+Y  GP   A        L  R
Sbjct:   82 SSSIQPWQYFCYLMLAGLGVPLSEDGLGLLAGSVLGSLEPARRART--VAALYLGVVLSDVETFLIGALLVSRVGRALRRXXXXXXXXXXXXXXXXXXQPLGGAAGAKAMRLVADSGAYVGFVARFCVGLRAPIALTCGVLPGVPLGRFAAGAALGALV-TVPAQLALGAALRERVTSAVGLASLCASFYAAGPVSFAVASAVLYALGAR 288          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A7S2S6G0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S6G0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.250e-25
Identity = 74/179 (41.34%), Postives = 103/179 (57.54%), Query Frame = 1
Query:  481 NVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLG----DESTIIDVAEGMPAGSKN--ILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVP-LRGFAAGVALGALFGTVPIQLALGYALRDRPAT 996
            + PP+ YFL L+AAG GVP+SED + I VGT L NA    + +   +   Y G+V+SD I +SIG   RRG+  P+R+ +L +      D++   D  EG     K   +L +I R+G YVG   R +VG+RGPM L  GF+G      FA G  LGA F ++PIQL +GY +    +T
Sbjct:  131 STPPMAYFLALIAAGFGVPISEDAMCILVGTSL-NALQEKQTRNTVLLALYTGIVLSDFITFSIGRALRRGVLEPIRKRVLGNENITTTDDANNNDKTEGKQRRRKRDRVLAKISRAGDYVGFVTRLSVGMRGPMILFTGFSGTTTFAKFAVGTILGA-FVSLPIQLWIGYRMSCAAST 307          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A1Y1I6Y9_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I6Y9_KLENI)

HSP 1 Score: 108 bits (271), Expect = 3.380e-23
Identity = 87/274 (31.75%), Postives = 122/274 (44.53%), Query Frame = 1
Query:  337 LPWARGSPHIARTCAAGELSMSTSTSAISDIRRFFGASSISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNANFT--TRHKV------------ACVAWCYAGVVISDLIPYSIG-CGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWLSRRKRRPRDV 1113
            L W R SP  A    AG+       +A       FGA  +   +   +  P + YF  LMAAG G+ VSE+ L ++VG  LG       TR  +            + + W Y GV +SDLIP+  G    +RG               ES    +     A    +   +R+ G Y+G+ ERF++GVR P   L GF+GV    F  GV  G LF T+P+Q+ LG+ LRDRP    A  AA +  +T  P   A    A  ++ +R  +  D 
Sbjct:   17 LVWRRPSPAFA-AAVAGDQGAGAGGAAFK-----FGAFGLRGSLT--DRTPGLAYFALLMAAGCGLFVSEEALNVWVGGSLGRCLVLDGTREALMQSLRANWGYIASVIFWVYWGVCLSDLIPFYAGKWAAQRG---------------ESVTEKLGGTNQATLARVTSAVRKYGAYIGLVERFSLGVRNPTAFLAGFSGVSTSTFFIGVCAGGLF-TLPLQMGLGFVLRDRPVAALATVAAVVGTWTVVPYASAALAAAWFFVKQRLDKKGDA 266          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: J3LAC8_ORYBR (Uncharacterized protein n=4 Tax=Oryza TaxID=4527 RepID=J3LAC8_ORYBR)

HSP 1 Score: 107 bits (268), Expect = 4.400e-22
Identity = 76/217 (35.02%), Postives = 111/217 (51.15%), Query Frame = 1
Query:  487 PPVYYFLYLMAAGVGVPVSEDVLLIFVGTLLGNA------------NFTTR--HKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWLSRRK 1095
            P   YF  LMAAG G+ +SE+ L ++VG  L  +            +F+T   + ++ V W Y GV ISD++P+ +G  FR+           K   D S+ I + +     + +I   +++ G  +G  ERF+VGVR P   L G  G+P   + AGV  G LF T+PIQLA+G+ LR+RP    A  AA +  +T  P   A       +LSRRK
Sbjct:  157 PGWVYFWLLMAAGFGLFISEEALNVWVGISLARSLCLDGTWPSLVNSFSTNASYIISTVLWVYWGVCISDMVPFYLGKLFRQ----------TKASEDISSKIGIGKEK---ALSISRAVQKYGNLIGFVERFSVGVRNPTGFLAGALGIPADCYFAGVCCGCLF-TLPIQLAVGFFLRERPVVALASVAAAVGMWTVFPYAAAACTALFFYLSRRK 359          
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Match: A0A6G1FFI5_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1FFI5_9ORYZ)

HSP 1 Score: 105 bits (261), Expect = 4.460e-22
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 1
Query:  499 YFLYLMAAGVGVPVSEDVLLIFVG--------------TLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRILLKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMTLLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAFISYYTFGPPLIATFGGATLWLSRRK 1095
            YF  LMAAG G+ +SE+ L ++VG              +L+ + +    + ++ V W Y GV ISD++P+ +G  FR+           +   D S+ I + +     + +I   +++ G  +G  ERF+VGVR P   L G  G+P   + AGV  G LF T+PIQLA+G+ LR+RP    A  AA +  +T  P   A        LSRRK
Sbjct:   42 YFWLLMAAGFGLFISEEALNVWVGISLARSLCLDGTWRSLVNSFSMNASYIISTVLWVYWGVCISDMVPFYLGKLFRQ----------TRASEDISSKIGIGKEK---ALSISRAVQKYGNLIGFVERFSVGVRNPTGFLAGALGIPADCYFAGVCCGCLF-TLPIQLAVGFFLRERPVVALASVAAAVGMWTVFPYAAAACTALFFCLSRRK 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19257.5330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DK52_HETAK8.500e-5051.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4F5D7_VITBC1.620e-4545.33Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A8J9S1T7_9CHLO2.080e-3242.37Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A7R9TA43_9VIRI4.490e-3043.60Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A5J4YD61_9CHLO3.670e-2734.33Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A8J5X791_DIALT4.370e-2638.10Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S2S6G0_9STRA3.250e-2541.34Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Y1I6Y9_KLENI3.380e-2331.75Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
J3LAC8_ORYBR4.400e-2235.02Uncharacterized protein n=4 Tax=Oryza TaxID=4527 R... [more]
A0A6G1FFI5_9ORYZ4.460e-2233.80Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19257contigH-elongata_contig19257:3746..6704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.5
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog4533.OB02G15950.1
EggNOG OGs28NG4@1,2QV1S@2759,37RQI@33090,3G8J5@35493,3I8IA@38820,3KSTT@4447
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons5
Model size1452
Cds size1062
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.2251654-UTR-H-elongata_contig19257:3745..40151622930098.2251654-UTR-H-elongata_contig19257:3745..4015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19257 3746..4015 -
1691679279.1631515-UTR-H-elongata_contig19257:3745..40151691679279.1631515-UTR-H-elongata_contig19257:3745..4015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19257 3746..4015 -
1622930098.3177176-UTR-H-elongata_contig19257:6584..67041622930098.3177176-UTR-H-elongata_contig19257:6584..6704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19257 6585..6704 -
1691679279.2189407-UTR-H-elongata_contig19257:6584..67041691679279.2189407-UTR-H-elongata_contig19257:6584..6704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19257 6585..6704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.2364724-CDS-H-elongata_contig19257:4015..44231622930098.2364724-CDS-H-elongata_contig19257:4015..4423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 4016..4423 -
1691679279.1763222-CDS-H-elongata_contig19257:4015..44231691679279.1763222-CDS-H-elongata_contig19257:4015..4423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 4016..4423 -
1622930098.2517242-CDS-H-elongata_contig19257:4630..47471622930098.2517242-CDS-H-elongata_contig19257:4630..4747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 4631..4747 -
1691679279.1839857-CDS-H-elongata_contig19257:4630..47471691679279.1839857-CDS-H-elongata_contig19257:4630..4747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 4631..4747 -
1622930098.2660651-CDS-H-elongata_contig19257:5034..51621622930098.2660651-CDS-H-elongata_contig19257:5034..5162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 5035..5162 -
1691679279.191982-CDS-H-elongata_contig19257:5034..51621691679279.191982-CDS-H-elongata_contig19257:5034..5162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 5035..5162 -
1622930098.2827792-CDS-H-elongata_contig19257:5520..57511622930098.2827792-CDS-H-elongata_contig19257:5520..5751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 5521..5751 -
1691679279.2000222-CDS-H-elongata_contig19257:5520..57511691679279.2000222-CDS-H-elongata_contig19257:5520..5751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 5521..5751 -
1622930098.2970057-CDS-H-elongata_contig19257:6406..65841622930098.2970057-CDS-H-elongata_contig19257:6406..6584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 6407..6584 -
1691679279.2082763-CDS-H-elongata_contig19257:6406..65841691679279.2082763-CDS-H-elongata_contig19257:6406..6584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19257 6407..6584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19257.5330.1prot_H-elongata_contig19257.5330.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19257 4016..6584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19257.5330.1

>prot_H-elongata_contig19257.5330.1 ID=prot_H-elongata_contig19257.5330.1|Name=mRNA_H-elongata_contig19257.5330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp
MSHRKNMNNYVGLLFICIFVLVTMIPCSCFQLPGSDAGGLLQVRGMLDTS
ACNRSSRRFGDCGRREQGVPRGLPWARGSPHIARTCAAGELSMSTSTSAI
SDIRRFFGASSISAVMNAANNVPPVYYFLYLMAAGVGVPVSEDVLLIFVG
TLLGNANFTTRHKVACVAWCYAGVVISDLIPYSIGCGFRRGLFNPLRRIL
LKDLGDESTIIDVAEGMPAGSKNILERIRRSGKYVGVAERFAVGVRGPMT
LLCGFTGVPLRGFAAGVALGALFGTVPIQLALGYALRDRPATVAAIGAAF
ISYYTFGPPLIATFGGATLWLSRRKRRPRDVRGGEGECQNAGDLELGTGR
AGI*
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mRNA from alignment at H-elongata_contig19257:3746..6704-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19257.5330.1 ID=mRNA_H-elongata_contig19257.5330.1|Name=mRNA_H-elongata_contig19257.5330.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2959bp|location=Sequence derived from alignment at H-elongata_contig19257:3746..6704- (Himanthalia elongata Himel1 dioecious)
TCGTCCTATATCCCCTTCATTGGGGCTGTATCCGAAAGGCGGCGGGATTC CAACATTTGACAAGAGTCGTCACCCCAAGGCAAGCGTTCCCCAGCGTGCG TGCTGAGCGGCGTTCGAGAGATGAGTCACCGGAAAAATATGAATAATTAT GTGGGACTGCTTTTCATATGCATATTTGTGCTAGTGACTATGATACCGTG CTCGTGTTTCCAGCTTCCTGGAAGTGATGCGGGTGGATTGCTTCAAGTAC GTGGGATGCTCGACACGAGTGCATGCAATCGCAGTAGTAGGCGCTTCGGT GAGTGATCTTCACGTGCGCAGTCATGAACACTACAGGGGACATGTATCCC ACTCCGTATTAGATGGTATCCTGGTATTGCCCTTGTCTTCTGGTCTTCTT TTCGTGGGCCAGAATTTCGGTGTTAATTATTAATATTAATATAATATTTG GCAGTTTTGGGATAGGTTGGAAGCGAAATGTACAAAGTAGCCCCTCCTAA TATCGGTTTGTGCCGCGTGCATCGCGCTATTATTATTTTTAAAACCTTGA ACTCATTCCAACCCTTCGAACATCACACCTTCTTGGCGCCGTGAGAGGTG CAGTCCAGGGGACCAACTATCGTCAGGTTTGAATATGTACATTACTACCT TTGAGCACTCCGTCTTTCCGAATCGATTACCTATCGCGTGAGATTATTGT GCTCGGATCTAATGAGACGACGGTTAGGCCTCACCCGGCGATAAAGGCCC AGGAAGTAACAAACGCCAAGGAAGTCATTTGAAAGCCGGTTCGTTGGTAC TGTACACAGCTTTGTGTTACGCTGTAAGAACAATTAGTACTCGTACCTGT TGATTGCTTCCGACCGAGGCCTCACTCCCGGCTTGCCAAACATAGCTGCG TTTTTCAAACGCATTTACGTCAAACGCTCCGTAACGATAACTCCTCCCTG AAGGTGACTGCGGTAGGAGAGAACAAGGCGTCCCGCGAGGCCTGCCGTGG GCAAGGGGGTCGCCGCACATTGCCCGGACGTGCGCGGCGGGAGAATTATC GATGTCGACAAGCACGTCGGCAATATCCGACATCCGCAGATTCTTCGGCG CATCATCTATCTCGGCGGTCATGAACGCCGCGAACAACGTGCCCCCTGTT TACTACTTTCTGTACCTAATGGCGGCGGGGGTTGGTGAGAGCGTCTCTTG AGTGCACCCTTTCGTCGGAAGCGCCAAGTCTGTACACGGCAGTAAATTGT GGAGGCCGATGGTCGAACGTTCTCACCATACGAACTAGGAATAGCAGTGT CGTCGGTTTGCTTCTCATCGTACAGCGCTTCGCTGCCGGTGTAGCAGCAA TTGCGTTGGAGTGCACATCTGGAATAGAGGAAGTAGGGGATACAACTCCT GCCCGTCAGAGTCCTGCTCACACATCACATCGACAGGCCTGTATCTGGTA CTCTGTTTTCCCTCAGGCGTAGCAGATACTGTACATTTTACAGACAGCAC GTGTTCGAGAACCAAATGATCTGTTCGATAAACTTGATACAGGAGTGCCA GTGAGCGAGGACGTTCTGCTGATCTTCGTGGGTACCTTGTTGGGCAACGC AAACTTCACGACAAGGCACAAGGTGGCGTGCGTGGCGTGGTGCTACGCTG GGGTTGTTATAAGCGATCTGGTGAGCTTTCCTAAACCGCAAAACAAAATC TTCCCAGACTTGACTCTCTAAGCAGCTGGCGGTCAAGTGGCGCATCTCTG ATCCTGTTGCTTTCAACGGCTATTTCCGAGCCGCGGGAGATCCGCATCCA AGATTGGATCTATGTGTTAGATAATTGTACTGAATTAGAGATGCATTGAC TCGTGGGTAACTGTCTTGCAGGGGGTTGATCCGCCCAATAGTGATGTGGA ACCGTCGCTTGCAGGCAAAGCCTTTCACCCTCGCACAACGTGACTCCCCC GATACAGATTCCGTACAGCATTGGTTGCGGCTTTCGTCGGGGATTGTTCA ACCCTTTGCGCCGCATCCTGTTGAAGGATCTGGGCGACGAAAGCACGATA ATTGATGTGGCAGAAGGGATGCCGGTGAGCGACCCAGGCAGTACCCATAT CATCGTCTGCGGAAGAAAGTGACGCAGGGCCCCGGAGGCGGTTTCCGCCA TCGTGTATCATTCCGTAGGCCAAGCATATTGAAAGCGACTATTCGGTTCC CTGATTTTGCCGAATTCGGTTCCACGTACTCGGCCAAATCCTCCTCCCCC TTTGTCGTGCATCGATTCCCCCTCGCTGCAGGCTGGCAGCAAGAACATCC TCGAAAGAATCCGTCGGTCAGGGAAATACGTTGGGGTGGCGGAGCGCTTT GCGGTGGGAGTCCGAGGTCCTATGACTCTTTTGTGCGGCTTTACAGGAGT GCCGCTACGAGGGTTCGCCGCGGGCGTCGCCCTCGGCGCCCTCTTCGGGA CGGTACCCATCCAGCTCGCTCTGGGGTACGCGCTACGAGATCGACCCGCC ACGGTGGCAGCCATCGGTGCGGCGTTCATTTCATACTACACGTTTGGGCC GCCACTTATCGCGACGTTTGGAGGCGCTACCCTCTGGCTAAGTCGAAGAA AAAGAAGACCAAGGGATGTCAGAGGGGGAGAGGGGGAATGTCAGAACGCT GGAGACCTAGAGCTCGGGACGGGTAGGGCGGGGATCTAGGGTGAGGGTTT GAAGAGGGAGATGTCTGACGCGTCTTGAGTTGGAGGTTTGTTGTTTACGG AAGGACTGTTTCACCTCGCTTGCTCAGGAGTTCCTTAGGGACTTAAGGCT TTTGAGTCTCTCCGCATTTTAATGCTACGAAGGCGTCTCGGTCATTTTCT GGTGTTTTGTTTGTTGTTGGTCACACATTTAGCAGAAGATCAACCGGATT TGGTTGCCTTCTGCTCGTGGTCAGCTGAACAGGGAAAATAATTTCCCCCT GTCCCCGTT
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Coding sequence (CDS) from alignment at H-elongata_contig19257:3746..6704-

>mRNA_H-elongata_contig19257.5330.1 ID=mRNA_H-elongata_contig19257.5330.1|Name=mRNA_H-elongata_contig19257.5330.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2124bp|location=Sequence derived from alignment at H-elongata_contig19257:3746..6704- (Himanthalia elongata Himel1 dioecious)
ATGAGTCACCGGAAAAATATGAATAATTATGTGGGACTGCTTTTCATATG
CATATTTGTGCTAGTGACTATGATACCGTGCTCGTGTTTCCAGCTTCCTG
GAAGTGATGCGGGTGGATTGCTTCAAGTACGTGGGATGCTCGACACGAGT
GCATGCAATCGCAGTAGTAGGCGCTTCGATGAGTCACCGGAAAAATATGA
ATAATTATGTGGGACTGCTTTTCATATGCATATTTGTGCTAGTGACTATG
ATACCGTGCTCGTGTTTCCAGCTTCCTGGAAGTGATGCGGGTGGATTGCT
TCAAGTACGTGGGATGCTCGACACGAGTGCATGCAATCGCAGTAGTAGGC
GCTTCGGTGACTGCGGTAGGAGAGAACAAGGCGTCCCGCGAGGCCTGCCG
TGGGCAAGGGGGTCGCCGCACATTGCCCGGACGTGCGCGGCGGGAGAATT
ATCGATGTCGACAAGCACGTCGGCAATATCCGACATCCGCAGATTCTTCG
GCGCATCATCTATCTCGGCGGTCATGAACGCCGCGAACAACGTGCCCCCT
GTTTACTACTTTCTGTACCTAATGGCGGCGGGGGTTGGTGACTGCGGTAG
GAGAGAACAAGGCGTCCCGCGAGGCCTGCCGTGGGCAAGGGGGTCGCCGC
ACATTGCCCGGACGTGCGCGGCGGGAGAATTATCGATGTCGACAAGCACG
TCGGCAATATCCGACATCCGCAGATTCTTCGGCGCATCATCTATCTCGGC
GGTCATGAACGCCGCGAACAACGTGCCCCCTGTTTACTACTTTCTGTACC
TAATGGCGGCGGGGGTTGGAGTGCCAGTGAGCGAGGACGTTCTGCTGATC
TTCGTGGGTACCTTGTTGGGCAACGCAAACTTCACGACAAGGCACAAGGT
GGCGTGCGTGGCGTGGTGCTACGCTGGGGTTGTTATAAGCGATCTGGAGT
GCCAGTGAGCGAGGACGTTCTGCTGATCTTCGTGGGTACCTTGTTGGGCA
ACGCAAACTTCACGACAAGGCACAAGGTGGCGTGCGTGGCGTGGTGCTAC
GCTGGGGTTGTTATAAGCGATCTGATTCCGTACAGCATTGGTTGCGGCTT
TCGTCGGGGATTGTTCAACCCTTTGCGCCGCATCCTGTTGAAGGATCTGG
GCGACGAAAGCACGATAATTGATGTGGCAGAAGGGATGCCGATTCCGTAC
AGCATTGGTTGCGGCTTTCGTCGGGGATTGTTCAACCCTTTGCGCCGCAT
CCTGTTGAAGGATCTGGGCGACGAAAGCACGATAATTGATGTGGCAGAAG
GGATGCCGGCTGGCAGCAAGAACATCCTCGAAAGAATCCGTCGGTCAGGG
AAATACGTTGGGGTGGCGGAGCGCTTTGCGGTGGGAGTCCGAGGTCCTAT
GACTCTTTTGTGCGGCTTTACAGGAGTGCCGCTACGAGGGTTCGCCGCGG
GCGTCGCCCTCGGCGCCCTCTTCGGGACGGTACCCATCCAGCTCGCTCTG
GGGTACGCGCTACGAGATCGACCCGCCACGGTGGCAGCCATCGGTGCGGC
GTTCATTTCATACTACACGTTTGGGCCGCCACTTATCGCGACGTTTGGAG
GCGCTACCCTCTGGCTAAGTCGAAGAAAAAGAAGACCAAGGGATGTCAGA
GGGGGAGAGGGGGAATGTCAGAACGCTGGAGACCTAGAGCTCGGGACGGG
TAGGGCGGGGATCTAGGCTGGCAGCAAGAACATCCTCGAAAGAATCCGTC
GGTCAGGGAAATACGTTGGGGTGGCGGAGCGCTTTGCGGTGGGAGTCCGA
GGTCCTATGACTCTTTTGTGCGGCTTTACAGGAGTGCCGCTACGAGGGTT
CGCCGCGGGCGTCGCCCTCGGCGCCCTCTTCGGGACGGTACCCATCCAGC
TCGCTCTGGGGTACGCGCTACGAGATCGACCCGCCACGGTGGCAGCCATC
GGTGCGGCGTTCATTTCATACTACACGTTTGGGCCGCCACTTATCGCGAC
GTTTGGAGGCGCTACCCTCTGGCTAAGTCGAAGAAAAAGAAGACCAAGGG
ATGTCAGAGGGGGAGAGGGGGAATGTCAGAACGCTGGAGACCTAGAGCTC
GGGACGGGTAGGGCGGGGATCTAG
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