mRNA_H-elongata_contig19255.5328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19255.5328.1
Unique NamemRNA_H-elongata_contig19255.5328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: D7G2Q2_ECTSI (Isocitrate dehydrogenase [NADP] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q2_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 9.470e-121
Identity = 173/196 (88.27%), Postives = 187/196 (95.41%), Query Frame = 1 
Query:    1 DHIKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILKV 588
            DHIK+KLILPYVDL IEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQR+DEFKLKKMW+SPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQY+ATDF+A GPG+F M++KP+DGGE Q     VYD+EGAGVG+AMYNTDESIRAFARSCM++SL+KGWDLFLSTKNTILKV
Sbjct:   66 DHIKSKLILPYVDLDIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRMDEFKLKKMWKSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYKATDFMANGPGKFEMSFKPADGGETQSWE--VYDFEGAGVGMAMYNTDESIRAFARSCMNYSLSKGWDLFLSTKNTILKV 259
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: A0A835YYV7_9STRA (Isocitrate dehydrogenase [NADP] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV7_9STRA)

HSP 1 Score: 328 bits (842), Expect = 3.820e-109
Identity = 157/195 (80.51%), Postives = 176/195 (90.26%), Query Frame = 1 
Query:    1 DHIKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            D IK+KLILPY+DLKIEYFDLGLP+RDATDDQ+T+DAAHAILEH+VGIKCATITPDEQRV+EFKLK+MWRSPNGTIRNIL GTVFREPIVISNIPR+VPGWTKPIVVGRHAFGDQYRATDF+A  PG+F M++ P+DG   +     V+D+ GAGVG+ MYNT+ESIR FARSCM FSL KGWDLFLSTKNTILK
Sbjct:   59 DDIKSKLILPYLDLKIEYFDLGLPNRDATDDQVTVDAAHAILEHSVGIKCATITPDEQRVEEFKLKQMWRSPNGTIRNILNGTVFREPIVISNIPRLVPGWTKPIVVGRHAFGDQYRATDFVADRPGQFKMSFTPADG--TKPTEWKVFDFPGAGVGMGMYNTEESIRGFARSCMEFSLTKGWDLFLSTKNTILK 251
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: A0A3R7J3Y0_9STRA (Isocitrate dehydrogenase [NADP] n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J3Y0_9STRA)

HSP 1 Score: 313 bits (802), Expect = 1.040e-103
Identity = 150/193 (77.72%), Postives = 170/193 (88.08%), Query Frame = 1 
Query:    7 IKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            IK K I PY+DL IEYFDLGLP RDAT+DQ+TIDAAHAI EHNVGIKCATITPDEQRV+EFKLKKMWRSPNGTIRNIL GTVFREPIVISN+PR+VPGW KPIVVGRHAFGDQY++TDFIAPGPG+F + Y P+DG E   +   VYD++G GVG++MYNTDESI  FA+SC+SF+L+K  DLFLSTKNTILK
Sbjct:   42 IKDKYIHPYLDLNIEYFDLGLPHRDATNDQVTIDAAHAIQEHNVGIKCATITPDEQRVEEFKLKKMWRSPNGTIRNILNGTVFREPIVISNVPRLVPGWEKPIVVGRHAFGDQYKSTDFIAPGPGKFEVVYTPADGSEKTTME--VYDFKGPGVGLSMYNTDESIYGFAKSCLSFALSKKQDLFLSTKNTILK 232
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: A0A6A5ADM8_9STRA (Isocitrate dehydrogenase [NADP] n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ADM8_9STRA)

HSP 1 Score: 308 bits (788), Expect = 5.340e-102
Identity = 147/195 (75.38%), Postives = 168/195 (86.15%), Query Frame = 1 
Query:    1 DHIKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            D IK K + P +DLKIEYFDLGLP RD T+DQ+TIDAAHAI E NVGIKCATITPDE+RV EFKLK+MW+SPNGTIRNIL GTVFREPIVISN+PR+VPGW KPIVVGRHAFGDQY+ TDF+APGPG+F MT+ P+DG + Q     VYDY+GAGVG+AMYNTDESI AFA SC++F+L K  DL+LSTKNTILK
Sbjct:    7 DQIKAKFVHPNLDLKIEYFDLGLPHRDQTNDQVTIDAAHAIKEFNVGIKCATITPDEERVKEFKLKQMWKSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKCTDFVAPGPGKFNMTFTPADGSKPQSWE--VYDYQGAGVGLAMYNTDESIYAFAHSCLAFALTKKQDLYLSTKNTILK 199
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: H3G9I7_PHYRM (Isocitrate dehydrogenase [NADP] n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3G9I7_PHYRM)

HSP 1 Score: 308 bits (790), Expect = 1.160e-101
Identity = 146/193 (75.65%), Postives = 170/193 (88.08%), Query Frame = 1 
Query:    7 IKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            IK K I PY+DL IEYFDLGLP RDAT+DQ+T+DAAHAI EH+VGIKCATITPDEQRV+EFKLK+MWRSPNGTIRNIL GTVFREPIVISN+PR+VPGW KPIVVGRHAFGDQY++TDFIAPGPG+F + Y P+DG +   +   VYD++G GVG+AMYNTDESI  FA+SC+SF+L+K  DL+LSTKNTILK
Sbjct:   37 IKDKYIHPYLDLDIEYFDLGLPHRDATNDQVTVDAAHAIQEHHVGIKCATITPDEQRVEEFKLKQMWRSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKSTDFIAPGPGKFEVVYTPADGSDKTTLE--VYDFKGPGVGLAMYNTDESIYGFAKSCLSFALSKNQDLYLSTKNTILK 227
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: A0A059LRP9_9CHLO (Isocitrate dehydrogenase [NADP] n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LRP9_9CHLO)

HSP 1 Score: 307 bits (787), Expect = 4.460e-101
Identity = 145/195 (74.36%), Postives = 166/195 (85.13%), Query Frame = 1 
Query:    1 DHIKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            D IK KLILPYVDLKIEYFDLGLP+RDAT+DQ+T+DAA AI +HNVGIKCATITPDE RV EF LKKMW+SPNGTIRNIL GTVFREPIVI NIPR+VPGW KPIVVGRHAFGDQY+ATD + PGPG+  + Y P+DG E Q   + VY +EG GVG+AMYNT+ESIR FA SC  ++L++GW L+LSTKNTILK
Sbjct:   36 DQIKKKLILPYVDLKIEYFDLGLPNRDATNDQVTVDAAKAIQKHNVGIKCATITPDEARVQEFGLKKMWKSPNGTIRNILNGTVFREPIVIENIPRVVPGWVKPIVVGRHAFGDQYKATDIVVPGPGKLELRYVPADGSEPQT--HEVYQFEGPGVGLAMYNTEESIRGFATSCFEYALSRGWPLYLSTKNTILK 228
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: W4GZC0_9STRA (Isocitrate dehydrogenase [NADP] n=8 Tax=Aphanomyces TaxID=100860 RepID=W4GZC0_9STRA)

HSP 1 Score: 308 bits (788), Expect = 5.600e-101
Identity = 147/195 (75.38%), Postives = 168/195 (86.15%), Query Frame = 1 
Query:    1 DHIKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            D IK K + P +DLKIEYFDLGLP RD T+DQ+TIDAAHAI E NVGIKCATITPDE+RV EFKLK+MW+SPNGTIRNIL GTVFREPIVISN+PR+VPGW KPIVVGRHAFGDQY+ TDF+APGPG+F MT+ P+DG + Q     VYDY+GAGVG+AMYNTDESI AFA SC++F+L K  DL+LSTKNTILK
Sbjct:   62 DQIKAKFVHPNLDLKIEYFDLGLPHRDQTNDQVTIDAAHAIKEFNVGIKCATITPDEERVKEFKLKQMWKSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKCTDFVAPGPGKFNMTFTPADGSKPQSWE--VYDYQGAGVGLAMYNTDESIYAFAHSCLAFALTKKQDLYLSTKNTILK 254
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: A0A397A8Q7_9STRA (Isocitrate dehydrogenase [NADP] n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A8Q7_9STRA)

HSP 1 Score: 308 bits (788), Expect = 8.010e-101
Identity = 147/195 (75.38%), Postives = 168/195 (86.15%), Query Frame = 1 
Query:    1 DHIKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            D IK K + P +DLKIEYFDLGLP RD T+DQ+TIDAAHAI E NVGIKCATITPDE+RV EFKLK+MW+SPNGTIRNIL GTVFREPIVISN+PR+VPGW KPIVVGRHAFGDQY+ TDF+APGPG+F MT+ P+DG + Q     VYDY+GAGVG+AMYNTDESI AFA SC++F+L K  DL+LSTKNTILK
Sbjct:   74 DQIKAKFVHPNLDLKIEYFDLGLPHRDQTNDQVTIDAAHAIKEFNVGIKCATITPDEERVKEFKLKQMWKSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKCTDFVAPGPGKFNMTFTPADGSKPQSWE--VYDYQGAGVGLAMYNTDESIYAFAHSCLAFALTKKQDLYLSTKNTILK 266
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: W7U1U2_9STRA (Isocitrate dehydrogenase [NADP] n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1U2_9STRA)

HSP 1 Score: 306 bits (784), Expect = 2.320e-100
Identity = 147/193 (76.17%), Postives = 171/193 (88.60%), Query Frame = 1 
Query:    7 IKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            IK KLILPY+DLKIEY+DLGLP+RD T+DQ+T+DAA+AI + NVGIKCATITPDEQRV+EFKLK+MWRSPNGTIRNIL GTVFREPIVISNIPRI+PGW KPIVVGRHAFGDQYRATDF+   PG+F MT+  +DG E +  +N V+D++GAGVG+AMYNTDESIR FA SC +++L KGW LFLSTKNTILK
Sbjct:   67 IKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKFNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFVVDKPGKFEMTFTSTDGTEKK-TWN-VFDFKGAGVGMAMYNTDESIRGFAHSCFAYALMKGWPLFLSTKNTILK 257
[Close]
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Match: A0A3F2RHS7_9STRA (Isocitrate dehydrogenase (NADP(+)) n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RHS7_9STRA)

HSP 1 Score: 313 bits (802), Expect = 1.440e-99
Identity = 150/193 (77.72%), Postives = 170/193 (88.08%), Query Frame = 1 
Query:    7 IKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKCATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPGWTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYDYEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILK 585
            IK K I PY+DL IEYFDLGLP RDAT+DQ+TIDAAHAI EHNVGIKCATITPDEQRV+EFKLKKMWRSPNGTIRNIL GTVFREPIVISN+PR+VPGW KPIVVGRHAFGDQY++TDFIAPGPG+F + Y P+DG E   +   VYD++G GVG++MYNTDESI  FA+SC+SF+L+K  DLFLSTKNTILK
Sbjct:   42 IKDKYIHPYLDLNIEYFDLGLPHRDATNDQVTIDAAHAIQEHNVGIKCATITPDEQRVEEFKLKKMWRSPNGTIRNILNGTVFREPIVISNVPRLVPGWEKPIVVGRHAFGDQYKSTDFIAPGPGKFEVVYTPADGSEKTTME--VYDFKGPGVGLSMYNTDESIYGFAKSCLSFALSKKQDLFLSTKNTILK 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19255.5328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q2_ECTSI9.470e-12188.27Isocitrate dehydrogenase [NADP] n=2 Tax=Ectocarpus... [more]
A0A835YYV7_9STRA3.820e-10980.51Isocitrate dehydrogenase [NADP] n=1 Tax=Tribonema ... [more]
A0A3R7J3Y0_9STRA1.040e-10377.72Isocitrate dehydrogenase [NADP] n=1 Tax=Phytophtho... [more]
A0A6A5ADM8_9STRA5.340e-10275.38Isocitrate dehydrogenase [NADP] n=1 Tax=Aphanomyce... [more]
H3G9I7_PHYRM1.160e-10175.65Isocitrate dehydrogenase [NADP] n=21 Tax=Peronospo... [more]
A0A059LRP9_9CHLO4.460e-10174.36Isocitrate dehydrogenase [NADP] n=1 Tax=Helicospor... [more]
W4GZC0_9STRA5.600e-10175.38Isocitrate dehydrogenase [NADP] n=8 Tax=Aphanomyce... [more]
A0A397A8Q7_9STRA8.010e-10175.38Isocitrate dehydrogenase [NADP] n=2 Tax=Aphanomyce... [more]
W7U1U2_9STRA2.320e-10076.17Isocitrate dehydrogenase [NADP] n=2 Tax=Monodopsid... [more]
A0A3F2RHS7_9STRA1.440e-9977.72Isocitrate dehydrogenase (NADP(+)) n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19255contigH-elongata_contig19255:4298..6820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.2
Seed ortholog evalue7.7e-98
Seed eggNOG ortholog2880.D7G2Q2
Preferred nameIDP1
KEGG rclassRC00001,RC00084,RC00114,RC00626,RC02801
KEGG koko:K00031
KEGG ReactionR00267,R00268,R01899
KEGG Pathwayko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146
KEGG ModuleM00009,M00010,M00173,M00740
GOsGO:0003674,GO:0003824,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006139,GO:0006520,GO:0006536,GO:0006537,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009064,GO:0009084,GO:0009117,GO:0009295,GO:0009987,GO:0015980,GO:0016042,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019395,GO:0019637,GO:0019752,GO:0030258,GO:0031974,GO:0032787,GO:0034440,GO:0034641,GO:0042579,GO:0042645,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0072350,GO:0072524,GO:1901360,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.isocitrate dehydrogenase (NADP ) activity
EggNOG OGsCOG0538@1,KOG1526@2759
EC1.1.1.42
COG Functional cat.C
BiGG ReactioniMM904.YLR174W,iND750.YLR174W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons7
Model size603
Cds size603
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930097.9536796-CDS-H-elongata_contig19255:4297..44231622930097.9536796-CDS-H-elongata_contig19255:4297..4423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 4298..4423 +
1691679279.037973-CDS-H-elongata_contig19255:4297..44231691679279.037973-CDS-H-elongata_contig19255:4297..4423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 4298..4423 +
1622930097.9689178-CDS-H-elongata_contig19255:4941..49991622930097.9689178-CDS-H-elongata_contig19255:4941..4999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 4942..4999 +
1691679279.0563908-CDS-H-elongata_contig19255:4941..49991691679279.0563908-CDS-H-elongata_contig19255:4941..4999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 4942..4999 +
1622930097.9837902-CDS-H-elongata_contig19255:5182..52961622930097.9837902-CDS-H-elongata_contig19255:5182..5296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 5183..5296 +
1691679279.066194-CDS-H-elongata_contig19255:5182..52961691679279.066194-CDS-H-elongata_contig19255:5182..5296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 5183..5296 +
1622930098.0177324-CDS-H-elongata_contig19255:5773..59001622930098.0177324-CDS-H-elongata_contig19255:5773..5900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 5774..5900 +
1691679279.0797105-CDS-H-elongata_contig19255:5773..59001691679279.0797105-CDS-H-elongata_contig19255:5773..5900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 5774..5900 +
1622930098.040873-CDS-H-elongata_contig19255:5943..59591622930098.040873-CDS-H-elongata_contig19255:5943..5959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 5944..5959 +
1691679279.089567-CDS-H-elongata_contig19255:5943..59591691679279.089567-CDS-H-elongata_contig19255:5943..5959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 5944..5959 +
1622930098.065351-CDS-H-elongata_contig19255:6215..62691622930098.065351-CDS-H-elongata_contig19255:6215..6269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 6216..6269 +
1691679279.0983293-CDS-H-elongata_contig19255:6215..62691691679279.0983293-CDS-H-elongata_contig19255:6215..6269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 6216..6269 +
1622930098.0814724-CDS-H-elongata_contig19255:6712..68201622930098.0814724-CDS-H-elongata_contig19255:6712..6820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 6713..6820 +
1691679279.109985-CDS-H-elongata_contig19255:6712..68201691679279.109985-CDS-H-elongata_contig19255:6712..6820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19255 6713..6820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19255.5328.1prot_H-elongata_contig19255.5328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19255 4298..6820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19255.5328.1

>prot_H-elongata_contig19255.5328.1 ID=prot_H-elongata_contig19255.5328.1|Name=mRNA_H-elongata_contig19255.5328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
DHIKTKLILPYVDLKIEYFDLGLPSRDATDDQITIDAAHAILEHNVGIKC
ATITPDEQRVDEFKLKKMWRSPNGTIRNILKGTVFREPIVISNIPRIVPG
WTKPIVVGRHAFGDQYRATDFIAPGPGEFTMTYKPSDGGEAQCVYNIVYD
YEGAGVGVAMYNTDESIRAFARSCMSFSLNKGWDLFLSTKNTILKVCVTV
*
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mRNA from alignment at H-elongata_contig19255:4298..6820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19255.5328.1 ID=mRNA_H-elongata_contig19255.5328.1|Name=mRNA_H-elongata_contig19255.5328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2523bp|location=Sequence derived from alignment at H-elongata_contig19255:4298..6820+ (Himanthalia elongata Himel1 dioecious)
GACCACATCAAGACGAAGTTGATCCTCCCTTACGTTGACCTCAAGATCGA
GTACTTCGACCTGGGCCTCCCCAGCCGCGACGCTACCGACGACCAGATCA
CCATCGACGCCGCGCACGCCATCTTGGTGAGAAAACCTTACCGAATGCTA
CCATCTTGGTGAGAAAACACAACCGAATACGACTCGAAGAACTTCAGTGA
TTTTTATTTTTCTTCTTCCTTTAAAAAAACCCAACTATTTCGTAGCTTTG
AATCTCTCCCCTTTCCCCCTCCAAATCCTCCATACATACATACGAACTTC
GTCTTACATCGTTGTATCGTTGTGGTTGTTTTCACATGTGGTGCATCTCG
ATTGGACAGGTAAAAAACATACTGCCACAAACAGGGAACACCTCTCTATC
AATAAAACACGCTACTTCTCCTGTGTCATACACACACACATATATATATA
TATATATATATATCCATGAGATTATCTAGCCTCCGGTGAATTCGACGCGA
TTGCGTGGTGTACGGTACATGGAGTTGATCAACCTCCGCCTGAAATAAAA
TGGTATACATTCGACGAAAGAGCGGTAAGAGCCGCTAGTTTTTGCTTACA
CATATCGATGTCGTCGTTATCTCGGGGAAACAAAACACACGCAGGAGCAC
AACGTGGGCATCAAGTGCGCGACCATCACTCCCGACGAGCAACGAGTTGA
TGGTGAGAGGCACGGCCTGCATAGGTCGCACTAATAATAGTATCACACGT
ACTCTTACGTACAAGCAGTAGTCTTCTCGCTCAGGGGGCGCCCTTGCTAA
GCCTGAAGACTCTTTTGTTTCCAAGAAAACTTCATCGACGGTGGAAGAAT
GTTTATCGCTCCCGTATTTGTTTGGAACTCCACAGAATTCAAGCTGAAAA
AGATGTGGCGGTCTCCGAACGGAACCATCCGGAACATTCTGAAGGGGACC
GTGTTCCGTGAGCCGATCGTGATCTCCAACATCCCTCGAATCGTGCCCGG
TGAAGTCATTGGTTTATAGTATAGGCTTTTAACAAAGTACATGCGTTTCT
GTGTCTGTATTTATGTTTGTTTCTGTTTAGCCATATTGCGCTTTGCTGAT
TTGCTGATGCCAGCGGTAACGTTTTCAGCGAACGCCTTGTTGGGTGTGTT
GTGGGGGGGGGTTAGAGGGTGCGTGATGCATTTTGTCTCGGTTCGAGAAG
AATGCGCATCAAACCAACCCGGCACTATTGTAAAAGCCCCCTCCCCCCCA
TCCCTCGTTATGGGCTTCAGAAGGGTCCGGAGAATATTGTGCTTTCGGGA
ACAGTTTTCAGAGATAACCTGCGATAACCTCTCGAGTAACGTTAGGCGGT
TGAAGTAAAGTGTTCTTGCGCTGAAAGTGATGGTGTATGAGACGGTGGCA
CTGTGCCGTTCCGTGGATGTAGGATGAATGCTTGCGTGAATTAAATGTGT
CTGTGGGCATTATTCTCTTTCGGCAGGGTGGACGAAGCCAATCGTGGTCG
GAAGGCACGCGTTCGGCGACCAGTACAGGGCCACGGACTTTATCGCCCCC
GGCCCGGGGGAGTTCACAATGACGTATAAGCCTTCGGACGGCGGGGAGGC
CCAGTCTTGGAAGGCGAGCGCCACGATATCTTTATTATTTATATAGATGT
GTATATAATATAGTCTAGTGGCGCGTGATTCTTCGTCCCAGCGTAGAGCG
AAGGGCATACAAAAAAAAGGTAAAAAATAACATAATGTACTTCGTTCAAT
AGTGCACGGTAAAAAATAGCCATGCAATAGCATTGAGTAGCAGCATCCGC
AGCGATTGGATATCCAACACGACACTCGAGCAAAAGTCACCAGATATTCG
CGCATCGCCCGCTGACGGCGCAGTATTAGAAGGAATGTGTGTGGTGTTTT
GTTTTATGTTTCCTCCAGGTGTATGACTACGAGGGAGCTGGCGTGGGAGT
GGCGATGTACAACACGGATGAGGTATCAAAGAAGGAGGCGTTTTCTGGCA
ACGAGTGACTCTTGACTCTTAAACTGAACTAACTATACTTATTCTGTGTC
GTCAGGCATGGGCTTTTTTGTAAAAGCAAGAAGGCTTTTTCAGTGAAGAA
GAGGCTTATGACGTCGGCTTTCGGTCGGTGTACGAGTTTGCATGTTTTCT
CCCTGTGATACTTGCCCCGTCGGGTGAAGGAGGCGTTTGTGTATTTCCGC
GCAGACGAAGACAAATAATATCACATCGAAATTAAACCGAAATTGAGAGA
GAAGAAAAAAAATGAAGGAAAAGAATGCAGCTAAGCGCGAAATAATTTGC
GACCGAAAAAATCATGATCCAACAATGAAGGCTCGGTTTAAATTTCCAGA
GAGCCTTATGCCACTCTTTCTAAGAAACTAATATGTCACCCCTTTTTCCC
GTTGCCTCGCCACAGTCAATCCGAGCTTTCGCGAGGTCCTGCATGAGCTT
CTCCCTCAACAAGGGCTGGGACCTGTTCCTCTCTACAAAAAACACCATCC
TCAAGGTGTGTGTAACCGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig19255:4298..6820+

>mRNA_H-elongata_contig19255.5328.1 ID=mRNA_H-elongata_contig19255.5328.1|Name=mRNA_H-elongata_contig19255.5328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig19255:4298..6820+ (Himanthalia elongata Himel1 dioecious)
GACCACATCAAGACGAAGTTGATCCTCCCTTACGTTGACCTCAAGATCGA
GTACTTCGACCTGGGCCTCCCCAGCCGCGACGCTACCGACGACCAGATCA
CCATCGACGCCGCGCACGCCATCTTGGACCACATCAAGACGAAGTTGATC
CTCCCTTACGTTGACCTCAAGATCGAGTACTTCGACCTGGGCCTCCCCAG
CCGCGACGCTACCGACGACCAGATCACCATCGACGCCGCGCACGCCATCT
TGGAGCACAACGTGGGCATCAAGTGCGCGACCATCACTCCCGACGAGCAA
CGAGTTGATGGAGCACAACGTGGGCATCAAGTGCGCGACCATCACTCCCG
ACGAGCAACGAGTTGATGAATTCAAGCTGAAAAAGATGTGGCGGTCTCCG
AACGGAACCATCCGGAACATTCTGAAGGGGACCGTGTTCCGTGAGCCGAT
CGTGATCTCCAACATCCCTCGAATCGTGCCCGAATTCAAGCTGAAAAAGA
TGTGGCGGTCTCCGAACGGAACCATCCGGAACATTCTGAAGGGGACCGTG
TTCCGTGAGCCGATCGTGATCTCCAACATCCCTCGAATCGTGCCCGGGTG
GACGAAGCCAATCGTGGTCGGAAGGCACGCGTTCGGCGACCAGTACAGGG
CCACGGACTTTATCGCCCCCGGCCCGGGGGAGTTCACAATGACGTATAAG
CCTTCGGACGGCGGGGAGGCCCAGGTGGACGAAGCCAATCGTGGTCGGAA
GGCACGCGTTCGGCGACCAGTACAGGGCCACGGACTTTATCGCCCCCGGC
CCGGGGGAGTTCACAATGACGTATAAGCCTTCGGACGGCGGGGAGGCCCA
ATGTGTATATAATATAATGTGTATATAATATAGTGTATGACTACGAGGGA
GCTGGCGTGGGAGTGGCGATGTACAACACGGATGAGGTGTATGACTACGA
GGGAGCTGGCGTGGGAGTGGCGATGTACAACACGGATGAGTCAATCCGAG
CTTTCGCGAGGTCCTGCATGAGCTTCTCCCTCAACAAGGGCTGGGACCTG
TTCCTCTCTACAAAAAACACCATCCTCAAGGTGTGTGTAACCGTTTGATC
AATCCGAGCTTTCGCGAGGTCCTGCATGAGCTTCTCCCTCAACAAGGGCT
GGGACCTGTTCCTCTCTACAAAAAACACCATCCTCAAGGTGTGTGTAACC
GTTTGA
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