mRNA_H-elongata_contig192534.5326.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig192534.5326.1
Unique NamemRNA_H-elongata_contig192534.5326.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot
Match: A0A6H5KPT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.900e-17
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:   91 GTTEIGEISDLSQEDAT---PMWDKVQQSLGLGKWSYVGLGLALLMITLNNVLGLGWLGRAINPESE---LIDIESQRSPQMQVIRLDGPSNLLT 357
            G  E GE+   +QE A    P+W+KVQ +LGLG WSYVGLGLA+ +I LNNVLG+GW  + INPE E   +++++ Q+  Q+Q + LD  SNLL+
Sbjct:  195 GVEEEGEVGG-NQEAAVNQMPVWEKVQAALGLGVWSYVGLGLAVFIIVLNNVLGVGWATKIINPEYEPDSVLEVQ-QQGRQIQYMPLDDASNLLS 287
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BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot
Match: D8LM76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM76_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 4.540e-17
Identity = 41/75 (54.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:  142 PMWDKVQQSLGLGKWSYVGLGLALLMITLNNVLGLGWLGRAINPESE---LIDIESQRSPQMQVIRLDGPSNLLT 357
            P+W+KVQ +LGLG WSYVGLGLA+ +I LNNVLG+GW  + INPE E   +++++ Q+  Q+Q + LD  SNLL+
Sbjct:  143 PVWEKVQAALGLGVWSYVGLGLAVFIIVLNNVLGVGWATKIINPEYEPDSVLEVQ-QQGRQIQYMPLDDASNLLS 216
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BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot
Match: A0A835Z515_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z515_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.530e-8
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:   97 TEIGEISDLSQEDATPM-WDKVQQSLGLGKWSYVGLGLALLMITLNNVLGLGWLGRAINPESELIDIESQRSPQMQVIRLDGPSNLL 354
            T  G+  D+   D     W KV+++LGL   SY+GLGLA+++I  NN+LG GW GR    E + +  + + +    V+ L+ P N+L
Sbjct:  100 TRFGDDGDMQMPDGEATGWGKVEEALGLSTLSYLGLGLAVVIILFNNLLGPGWAGRLW--EGQELSPQPEMNLPYTVVPLNKPENIL 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KPT2_9PHAE1.900e-1750.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM76_ECTSI4.540e-1754.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z515_9STRA4.530e-836.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192534contigH-elongata_contig192534:5..367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005800.1
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930097.7788758-CDS-H-elongata_contig192534:4..3671622930097.7788758-CDS-H-elongata_contig192534:4..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192534 5..367 +
1691679278.968373-CDS-H-elongata_contig192534:4..3671691679278.968373-CDS-H-elongata_contig192534:4..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192534 5..367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192534.5326.1prot_H-elongata_contig192534.5326.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig192534 5..367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig192534.5326.1

>prot_H-elongata_contig192534.5326.1 ID=prot_H-elongata_contig192534.5326.1|Name=mRNA_H-elongata_contig192534.5326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
KGLKKGVGVGTREGFAKEGKSSVSTQRSTLGTTEIGEISDLSQEDATPMW
DKVQQSLGLGKWSYVGLGLALLMITLNNVLGLGWLGRAINPESELIDIES
QRSPQMQVIRLDGPSNLLTP*
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mRNA from alignment at H-elongata_contig192534:5..367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig192534.5326.1 ID=mRNA_H-elongata_contig192534.5326.1|Name=mRNA_H-elongata_contig192534.5326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig192534:5..367+ (Himanthalia elongata Himel1 dioecious)
AAGGGTCTAAAGAAAGGGGTCGGAGTAGGAACTCGGGAAGGTTTTGCCAA
GGAAGGAAAATCAAGCGTTTCAACGCAGAGGTCAACATTAGGGACCACGG
AAATAGGCGAGATTAGCGACCTGAGTCAGGAAGACGCCACACCGATGTGG
GATAAGGTCCAGCAGTCGCTTGGTCTGGGCAAGTGGAGTTACGTTGGGCT
TGGACTTGCGCTGTTGATGATTACTCTCAACAACGTTCTCGGCCTGGGAT
GGCTGGGCCGAGCGATCAATCCCGAATCTGAACTGATCGACATTGAGAGT
CAGCGGTCGCCGCAGATGCAGGTCATTCGATTGGACGGCCCAAGCAATCT
CCTGACGCCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig192534:5..367+

>mRNA_H-elongata_contig192534.5326.1 ID=mRNA_H-elongata_contig192534.5326.1|Name=mRNA_H-elongata_contig192534.5326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig192534:5..367+ (Himanthalia elongata Himel1 dioecious)
AAGGGTCTAAAGAAAGGGGTCGGAGTAGGAACTCGGGAAGGTTTTGCCAA
GGAAGGAAAATCAAGCGTTTCAACGCAGAGGTCAACATTAGGGACCACGG
AAATAGGCGAGATTAGCGACCTGAGTCAGGAAGACGCCACACCGATGTGG
GATAAGGTCCAGCAGTCGCTTGGTCTGGGCAAGTGGAGTTACGTTGGGCT
TGGACTTGCGCTGTTGATGATTACTCTCAACAACGTTCTCGGCCTGGGAT
GGCTGGGCCGAGCGATCAATCCCGAATCTGAACTGATCGACATTGAGAGT
CAGCGGTCGCCGCAGATGCAGGTCATTCGATTGGACGGCCCAAGCAATCT
CCTGACGCCTTGAAAGGGTCTAAAGAAAGGGGTCGGAGTAGGAACTCGGG
AAGGTTTTGCCAAGGAAGGAAAATCAAGCGTTTCAACGCAGAGGTCAACA
TTAGGGACCACGGAAATAGGCGAGATTAGCGACCTGAGTCAGGAAGACGC
CACACCGATGTGGGATAAGGTCCAGCAGTCGCTTGGTCTGGGCAAGTGGA
GTTACGTTGGGCTTGGACTTGCGCTGTTGATGATTACTCTCAACAACGTT
CTCGGCCTGGGATGGCTGGGCCGAGCGATCAATCCCGAATCTGAACTGAT
CGACATTGAGAGTCAGCGGTCGCCGCAGATGCAGGTCATTCGATTGGACG
GCCCAAGCAATCTCCTGACGCCTTGA
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