mRNA_H-elongata_contig192304.5320.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig192304.5320.1
Unique NamemRNA_H-elongata_contig192304.5320.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig192304.5320.1 vs. uniprot
Match: D7FN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN54_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 7.290e-29
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   25 AVKKVVGVQNATRKALEWLQHGDMTLQDLAQSLPKLSKARVEIVMEALRAAGLVTLVRKHAPDELVRNHI 234
            +VKKV GVQNATRKALEWLQ+GDM+L +L QSLPKLSKARVE+VMEALRAAGLVTLVRKHAP+ +  +H+
Sbjct:  105 SVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHV 174
[Close]
BLAST of mRNA_H-elongata_contig192304.5320.1 vs. uniprot
Match: A0A6H5KJM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.180e-27
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   25 AVKKVVGVQNATRKALEWLQHGDMTLQDLAQSLPKLSKARVEIVMEALRAAGLVTLVRKHAPDELVRNHI 234
            +VKKV GVQNATRKALEWLQ+GDM+L +L QSLPKLSKARVE+VMEALRAAGLVTLVRKHAP+ +  +H+
Sbjct:  104 SVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHV 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192304.5320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN54_ECTSI7.290e-2978.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJM1_9PHAE1.180e-2778.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192304contigH-elongata_contig192304:468..701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008440.1
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.4113214-CDS-H-elongata_contig192304:467..7011622930096.4113214-CDS-H-elongata_contig192304:467..701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192304 468..701 +
1691679278.7364008-CDS-H-elongata_contig192304:467..7011691679278.7364008-CDS-H-elongata_contig192304:467..701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192304 468..701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192304.5320.1prot_H-elongata_contig192304.5320.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig192304 468..701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig192304.5320.1

>prot_H-elongata_contig192304.5320.1 ID=prot_H-elongata_contig192304.5320.1|Name=mRNA_H-elongata_contig192304.5320.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
SGSTSSNHAVKKVVGVQNATRKALEWLQHGDMTLQDLAQSLPKLSKARVE
IVMEALRAAGLVTLVRKHAPDELVRNHI
back to top

mRNA from alignment at H-elongata_contig192304:468..701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig192304.5320.1 ID=mRNA_H-elongata_contig192304.5320.1|Name=mRNA_H-elongata_contig192304.5320.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig192304:468..701+ (Himanthalia elongata Himel1 dioecious)
TCTGGCTCAACCTCGTCTAACCATGCCGTGAAGAAGGTGGTGGGAGTTCA
AAACGCCACGCGCAAGGCTCTAGAATGGCTTCAGCACGGTGATATGACTC
TCCAGGACCTTGCTCAAAGTCTGCCGAAACTGTCAAAGGCTCGCGTCGAA
ATCGTCATGGAAGCGCTTCGCGCGGCTGGATTGGTTACCCTTGTTCGAAA
GCACGCTCCTGATGAGTTGGTAAGGAACCATATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig192304:468..701+

>mRNA_H-elongata_contig192304.5320.1 ID=mRNA_H-elongata_contig192304.5320.1|Name=mRNA_H-elongata_contig192304.5320.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig192304:468..701+ (Himanthalia elongata Himel1 dioecious)
TCTGGCTCAACCTCGTCTAACCATGCCGTGAAGAAGGTGGTGGGAGTTCA
AAACGCCACGCGCAAGGCTCTAGAATGGCTTCAGCACGGTGATATGACTC
TCCAGGACCTTGCTCAAAGTCTGCCGAAACTGTCAAAGGCTCGCGTCGAA
ATCGTCATGGAAGCGCTTCGCGCGGCTGGATTGGTTACCCTTGTTCGAAA
GCACGCTCCTGATGAGTTGGTAAGGAACCATATATCTGGCTCAACCTCGT
CTAACCATGCCGTGAAGAAGGTGGTGGGAGTTCAAAACGCCACGCGCAAG
GCTCTAGAATGGCTTCAGCACGGTGATATGACTCTCCAGGACCTTGCTCA
AAGTCTGCCGAAACTGTCAAAGGCTCGCGTCGAAATCGTCATGGAAGCGC
TTCGCGCGGCTGGATTGGTTACCCTTGTTCGAAAGCACGCTCCTGATGAG
TTGGTAAGGAACCATATA
back to top