mRNA_H-elongata_contig19227.5319.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19227.5319.1
Unique NamemRNA_H-elongata_contig19227.5319.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19227.5319.1 vs. uniprot
Match: A0A6H5KQK1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.080e-5
Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = 2 
Query: 1223 IKLVTNPKSTTLRGGTRSM*HRASHYDTLWRAHHSFLTRCIGWRRNNRTDHPIFYLDTLMKTG-SESIEVIMRRRGIVFA*FV 1468
            I+L+      TL  G  S    A HY  L   H  FLTRCIGW +  R+DHP+ Y    ++ G  E+IE  +  R + FA FV
Sbjct:  292 IRLIQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDHPLSYAQAFIQAGCEETIEATVCTRRLCFAGFV 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19227.5319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQK1_9PHAE1.080e-539.76Reverse transcriptase domain-containing protein n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19227contigH-elongata_contig19227:2..1481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1480
Cds size873
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19227.5319.1prot_H-elongata_contig19227.5319.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19227 66..938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.3226168-UTR-H-elongata_contig19227:1..651622930096.3226168-UTR-H-elongata_contig19227:1..65Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19227 2..65 +
1691679278.7042966-UTR-H-elongata_contig19227:1..651691679278.7042966-UTR-H-elongata_contig19227:1..65Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19227 2..65 +
1622930096.3585114-UTR-H-elongata_contig19227:938..14811622930096.3585114-UTR-H-elongata_contig19227:938..1481Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19227 939..1481 +
1691679278.7285936-UTR-H-elongata_contig19227:938..14811691679278.7285936-UTR-H-elongata_contig19227:938..1481Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19227 939..1481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.339666-CDS-H-elongata_contig19227:65..9381622930096.339666-CDS-H-elongata_contig19227:65..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19227 66..938 +
1691679278.717949-CDS-H-elongata_contig19227:65..9381691679278.717949-CDS-H-elongata_contig19227:65..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19227 66..938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19227.5319.1

>prot_H-elongata_contig19227.5319.1 ID=prot_H-elongata_contig19227.5319.1|Name=mRNA_H-elongata_contig19227.5319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp
MINVLKKKMCAGDGCSKTASNGEAGSNEREYCDKHALEEMVYFTSLTCAD
VSCSKGPRYGNGESAKRGYCAEHALEGMVNDLNNMCVDDGCSKTASYAKS
GSTKGDYCAEHALKGMVNVLKNIYAGDRCLKTASYAKAGRTKGDYCAEHA
MEGMVSVLNNMCADDTSFKGPKYGKAGSTKQEYCAEHALEGIVDVSITRC
AGDGRSKLARYGKTEIKNRDFSAKHAMGGGIVCTVPHNIPSSKKRVSKIS
SSPVSVPKRCKIDNYVGAPFSDTALDVVLAKLEVSVAKSE*
back to top

mRNA from alignment at H-elongata_contig19227:2..1481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19227.5319.1 ID=mRNA_H-elongata_contig19227.5319.1|Name=mRNA_H-elongata_contig19227.5319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1480bp|location=Sequence derived from alignment at H-elongata_contig19227:2..1481+ (Himanthalia elongata Himel1 dioecious)
ACCACACTACGGAAAGGCCGGAAGCACGAAACCGGAGTATTGCGCTAAAC
ATGCGTTGGATGGGATGATCAACGTTTTGAAGAAGAAAATGTGTGCCGGT
GATGGATGTTCTAAGACTGCGAGCAACGGAGAGGCTGGCAGCAATGAACG
GGAGTACTGCGACAAGCATGCCCTGGAGGAGATGGTCTATTTTACGAGCT
TAACGTGTGCCGACGTTAGTTGCTCCAAGGGACCAAGGTACGGTAATGGT
GAAAGCGCGAAACGGGGATACTGCGCTGAGCATGCCTTGGAGGGGATGGT
CAATGATTTGAACAATATGTGTGTCGATGATGGATGTTCCAAGACTGCGA
GCTATGCAAAGTCCGGAAGCACGAAGGGAGACTACTGCGCTGAGCATGCC
TTGAAGGGAATGGTCAATGTTTTAAAAAACATATATGCCGGTGATCGATG
TTTGAAGACTGCGAGCTATGCAAAGGCCGGAAGAACGAAGGGAGACTACT
GCGCTGAGCATGCCATGGAGGGTATGGTCAGTGTTTTAAACAATATGTGT
GCAGACGATACATCCTTTAAGGGGCCAAAATACGGCAAGGCTGGCAGCAC
AAAACAGGAGTACTGCGCTGAGCATGCCTTAGAAGGAATCGTCGATGTTT
CGATCACTAGGTGTGCCGGGGATGGAAGGTCTAAGCTAGCGAGATACGGA
AAAACCGAAATAAAAAATCGTGATTTCTCCGCAAAACATGCTATGGGTGG
TGGCATCGTGTGTACTGTCCCTCACAACATTCCAAGTTCCAAGAAGCGGG
TGTCGAAGATCTCTTCATCGCCAGTATCCGTGCCGAAAAGATGTAAAATC
GATAACTACGTTGGAGCCCCCTTTTCTGATACTGCATTAGATGTTGTTTT
GGCTAAGTTAGAGGTATCAGTCGCTAAATCCGAGTAGGTATGTTTTGCAA
AGGATTTAGTTGACGGTCTACTGTTGAACAGGAGCGGTGGCATTGCGCTC
CGTCGATTTCATGTCTTAAGATATTTTGTATTGGGTATGTTCGGCTGACT
ACAGGCAGGAGGCAACTAAATCCGGTTGATCCTTACTCTGCTATTTTAAG
CCCCAACAATTATTGTTCTTGATATTTGTTGAACGAGAAGGACGTTCATC
AAAATGTCAAGAGTATTGCAACGGGCAGCGTACATAAGCAACGATATAGT
AGCTGGGTTAATTCAAGGAGATATAAAATTAGTAACAAATCCCAAATCCA
CAACGTTGAGGGGCGGTACGCGTTCGATGTAACATCGCGCGAGCCACTAC
GACACGCTGTGGCGAGCCCACCACAGCTTCTTGACTCGTTGCATTGGTTG
GCGAAGGAACAATCGCACCGATCACCCGATCTTCTATCTGGACACCCTAA
TGAAGACGGGAAGCGAGAGTATCGAGGTGATCATGCGCAGGAGGGGGATC
GTGTTCGCGTGATTCGTGGCGCGTATGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19227:2..1481+

>mRNA_H-elongata_contig19227.5319.1 ID=mRNA_H-elongata_contig19227.5319.1|Name=mRNA_H-elongata_contig19227.5319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig19227:2..1481+ (Himanthalia elongata Himel1 dioecious)
ATGATCAACGTTTTGAAGAAGAAAATGTGTGCCGGTGATGGATGTTCTAA
GACTGCGAGCAACGGAGAGGCTGGCAGCAATGAACGGGAGTACTGCGACA
AGCATGCCCTGGAGGAGATGGTCTATTTTACGAGCTTAACGTGTGCCGAC
GTTAGTTGCTCCAAGGGACCAAGGTACGGTAATGGTGAAAGCGCGAAACG
GGGATACTGCGCTGAGCATGCCTTGGAGGGGATGGTCAATGATTTGAACA
ATATGTGTGTCGATGATGGATGTTCCAAGACTGCGAGCTATGCAAAGTCC
GGAAGCACGAAGGGAGACTACTGCGCTGAGCATGCCTTGAAGGGAATGGT
CAATGTTTTAAAAAACATATATGCCGGTGATCGATGTTTGAAGACTGCGA
GCTATGCAAAGGCCGGAAGAACGAAGGGAGACTACTGCGCTGAGCATGCC
ATGGAGGGTATGGTCAGTGTTTTAAACAATATGTGTGCAGACGATACATC
CTTTAAGGGGCCAAAATACGGCAAGGCTGGCAGCACAAAACAGGAGTACT
GCGCTGAGCATGCCTTAGAAGGAATCGTCGATGTTTCGATCACTAGGTGT
GCCGGGGATGGAAGGTCTAAGCTAGCGAGATACGGAAAAACCGAAATAAA
AAATCGTGATTTCTCCGCAAAACATGCTATGGGTGGTGGCATCGTGTGTA
CTGTCCCTCACAACATTCCAAGTTCCAAGAAGCGGGTGTCGAAGATCTCT
TCATCGCCAGTATCCGTGCCGAAAAGATGTAAAATCGATAACTACGTTGG
AGCCCCCTTTTCTGATACTGCATTAGATGTTGTTTTGGCTAAGTTAGAGG
TATCAGTCGCTAAATCCGAGTAGATGATCAACGTTTTGAAGAAGAAAATG
TGTGCCGGTGATGGATGTTCTAAGACTGCGAGCAACGGAGAGGCTGGCAG
CAATGAACGGGAGTACTGCGACAAGCATGCCCTGGAGGAGATGGTCTATT
TTACGAGCTTAACGTGTGCCGACGTTAGTTGCTCCAAGGGACCAAGGTAC
GGTAATGGTGAAAGCGCGAAACGGGGATACTGCGCTGAGCATGCCTTGGA
GGGGATGGTCAATGATTTGAACAATATGTGTGTCGATGATGGATGTTCCA
AGACTGCGAGCTATGCAAAGTCCGGAAGCACGAAGGGAGACTACTGCGCT
GAGCATGCCTTGAAGGGAATGGTCAATGTTTTAAAAAACATATATGCCGG
TGATCGATGTTTGAAGACTGCGAGCTATGCAAAGGCCGGAAGAACGAAGG
GAGACTACTGCGCTGAGCATGCCATGGAGGGTATGGTCAGTGTTTTAAAC
AATATGTGTGCAGACGATACATCCTTTAAGGGGCCAAAATACGGCAAGGC
TGGCAGCACAAAACAGGAGTACTGCGCTGAGCATGCCTTAGAAGGAATCG
TCGATGTTTCGATCACTAGGTGTGCCGGGGATGGAAGGTCTAAGCTAGCG
AGATACGGAAAAACCGAAATAAAAAATCGTGATTTCTCCGCAAAACATGC
TATGGGTGGTGGCATCGTGTGTACTGTCCCTCACAACATTCCAAGTTCCA
AGAAGCGGGTGTCGAAGATCTCTTCATCGCCAGTATCCGTGCCGAAAAGA
TGTAAAATCGATAACTACGTTGGAGCCCCCTTTTCTGATACTGCATTAGA
TGTTGTTTTGGCTAAGTTAGAGGTATCAGTCGCTAAATCCGAGTAG
back to top