mRNA_H-elongata_contig19192.5311.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19192.5311.1
Unique NamemRNA_H-elongata_contig19192.5311.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19192.5311.1 vs. uniprot
Match: A0A6H5JI84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI84_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.590e-26
Identity = 112/296 (37.84%), Postives = 153/296 (51.69%), Query Frame = 1 
Query:   13 GGALPPCERCIILSEAVQDARARAKLLERLVEQAEEL---RLNQADQLSQRT-SADQAKAETITGDVDSMTHVAGSKGSQAVDRREASGAPAAVQELTGNGAGKEVKSAREERGVAGGGSSSEE---------------------------LLSAAEAVWRISEIARDALEKELDRRGEALASAKRASKEFKEAFSKQLQELSSARATLRSQQAELERWKSGAEKSSAKEKDTRRALESARIVTGDAARSRSEREAKALRVEADDLKQKVSSLRTRLACVQGRRQAELETANKKIE 807
            G  LP CERC++LSE+++  R RA+  ERL+E +E+L       A     R  SA Q      T D      +A   G+ A D    +G  A V  +   G  +      E   V       EE                               AE VWR+SE+AR+ L+ EL+R+ EAL++A + ++E KEA SKQ QE++     +R+Q+ E E+WK+ AE+S AKEKDTRRA+ESA++   D  R RS RE KAL  E   L +K+++LR+RL  VQ RR AE E A KK E
Sbjct:  648 GDILPACERCVVLSESLESLRERARAQERLLEHSEKLLTAATTTAASFDARIHSAGQRDESCPTADAGGDGPIALGPGASA-DPTTPTGVAADVAPV---GQVEPAIRPAENEDVPRDEQQPEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEVWRVSEMARNVLQGELERKDEALSAATKTARESKEALSKQRQEVARLNDAVRNQEKETEKWKADAERSIAKEKDTRRAMESAKVAAADVLR-RSGRERKALMGEVHTLNEKITALRSRLGGVQTRRNAECELAAKKTE 938
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BLAST of mRNA_H-elongata_contig19192.5311.1 vs. uniprot
Match: D7FL34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL34_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.290e-12
Identity = 82/242 (33.88%), Postives = 119/242 (49.17%), Query Frame = 1 
Query:   16 GALPP-CERCIILSEAVQDARARAKLLERLVEQAEEL---RLNQADQLSQRT-SADQAKAETITGDVDSMTHVAGSKGSQAVDRRE----ASGAPAAVQELTGNGAGKEVKSAREERGVAGGGSSSEELL-------------------SAAEAVWRISEIARDALEKELDRRGEALASAKRASKEFKEAFSKQLQELSSARATLRSQQAELERWKSGAEKSSAKEKDTRRALESARIVTGD 657
            G +PP CERC++LSE+++  R R +  ERL+E +E+L       A     R  SA Q      T D  S   +A   G+ A         A  +P    E     AG E     E++   G    +                       +AAE VWR+SE+AR+AL+ EL+R+ EAL++A + ++E KEA SKQ              + E E+W++ AE+S AKEKDTRRA+ESA++  G+
Sbjct:  718 GDIPPACERCVVLSESLESLRERTRAQERLLEHSEKLLTVATTTAAPFDTRVRSAGQRDESCPTADAGSNGPIALGPGASADPAAPVGVAADVSPVGEVEPAIRPAGNEDVPRVEQQPEEGSKHHASXXXXXXXXXXXXXXXXXXXXXXAAAEEVWRVSEMARNALQGELERKDEALSAATKTARESKEALSKQ--------------EKETEKWQADAERSIAKEKDTRRAMESAKVGQGE 945
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19192.5311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI84_9PHAE2.590e-2637.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL34_ECTSI2.290e-1233.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19192contigH-elongata_contig19192:845..2522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_006810.1
Exons3
Model size807
Cds size807
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19192.5311.1prot_H-elongata_contig19192.5311.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19192 845..2522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930095.0068295-CDS-H-elongata_contig19192:844..9831622930095.0068295-CDS-H-elongata_contig19192:844..983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19192 845..983 -
1691679278.243358-CDS-H-elongata_contig19192:844..9831691679278.243358-CDS-H-elongata_contig19192:844..983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19192 845..983 -
1622930095.0297806-CDS-H-elongata_contig19192:1563..17181622930095.0297806-CDS-H-elongata_contig19192:1563..1718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19192 1564..1718 -
1691679278.2508006-CDS-H-elongata_contig19192:1563..17181691679278.2508006-CDS-H-elongata_contig19192:1563..1718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19192 1564..1718 -
1622930095.214839-CDS-H-elongata_contig19192:2009..25221622930095.214839-CDS-H-elongata_contig19192:2009..2522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19192 2010..2522 -
1691679278.2644448-CDS-H-elongata_contig19192:2009..25221691679278.2644448-CDS-H-elongata_contig19192:2009..2522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19192 2010..2522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19192.5311.1

>prot_H-elongata_contig19192.5311.1 ID=prot_H-elongata_contig19192.5311.1|Name=mRNA_H-elongata_contig19192.5311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
MHTSGGALPPCERCIILSEAVQDARARAKLLERLVEQAEELRLNQADQLS
QRTSADQAKAETITGDVDSMTHVAGSKGSQAVDRREASGAPAAVQELTGN
GAGKEVKSAREERGVAGGGSSSEELLSAAEAVWRISEIARDALEKELDRR
GEALASAKRASKEFKEAFSKQLQELSSARATLRSQQAELERWKSGAEKSS
AKEKDTRRALESARIVTGDAARSRSEREAKALRVEADDLKQKVSSLRTRL
ACVQGRRQAELETANKKIE
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mRNA from alignment at H-elongata_contig19192:845..2522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19192.5311.1 ID=mRNA_H-elongata_contig19192.5311.1|Name=mRNA_H-elongata_contig19192.5311.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1678bp|location=Sequence derived from alignment at H-elongata_contig19192:845..2522- (Himanthalia elongata Himel1 dioecious)
ATGCACACGTCAGGGGGGGCACTGCCACCCTGTGAACGCTGCATAATTCT
CTCTGAGGCCGTTCAAGACGCGCGCGCGCGAGCGAAATTACTTGAGCGTC
TCGTGGAGCAGGCCGAAGAGCTCCGCCTTAATCAAGCCGATCAGCTCTCG
CAGCGGACGAGTGCGGATCAGGCGAAAGCAGAAACGATCACCGGTGATGT
TGATTCAATGACGCACGTTGCGGGCTCGAAGGGATCCCAGGCAGTCGACC
GGCGAGAGGCGTCTGGAGCCCCGGCGGCTGTACAGGAGCTTACTGGAAAT
GGCGCGGGAAAGGAAGTCAAGAGCGCAAGGGAAGAGAGAGGCGTGGCGGG
AGGTGGGAGTTCTTCAGAGGAGTTGCTTTCGGCCGCGGAGGCGGTGTGGC
GAATATCGGAGATTGCGCGGGATGCGCTCGAAAAGGAGTTGGACAGGAGG
GGCGAGGCGTTGGCGTCGGCGAAGAGAGCGTCCAAGGAGTTCAAGGAGGC
TTTCTCCAAGCAGGTGAGGAGAACATGGAGGTTGTCGCTAATCTCTACCG
CAATGTAGCTTGATATTTTGAGCTTATTACCTTGATGTTTTAGGCCCACG
AAGCAAGCGGAGGAGTTATGTTTTACTCCCAAACCATCTTGAGACACATG
TCGTGTAAACACTACCGGAAGCAAACACACCACACCACAAACTCGTGTTA
CGTGGTCTCCATATACTAAAGCGTCCTTCTCCCTTTCGGCACACACGGTT
GGGGCTCGATTCATATTTTGGCGATCCTCGGGGTATATATGTCTTTCGTT
CAAGCTCCAAGAGCTTTCGAGCGCGCGTGCGACATTACGAAGTCAGCAAG
CCGAGCTGGAAAGGTGGAAGAGCGGCGCAGAGAAATCAAGCGCTAAAGAG
AAGGACACCCGTCGAGCCCTGGAAAGCGCGCGCATCGTGACGGGGGACGC
CGCGCGCAGGTAGGCAACATACGCGAGACTCTTATGACAAACACAAACAT
TGTTTACTTCGCCAGTGAGGTAGTTTTTGCGCCTTAGCTGCTCCTCCTGT
ACTAGCATTGTAGTTGTTGATGATGATCATGCTATTGTTTCACCCTTTTG
ATGTTCATCATTATGCACGCTATCCACCAAGTGTGCCGCATAACGCTTAA
AACGACCGCCAATCCCGTTAGCGATATCCCGGTCATTGGAAACAAAATAT
ACGAAGTATAATATAATATCGATATATGAGGCAAGCATAGACTATCCATG
AACGAAACAATGAACCTACTGAACTGTTTTTGTCGTGTCACTGAGGTGAA
AAGAGGTCCGAGGGAGATGAGACACAAATGTTGACAAGTCCCGTTCGGCT
CCCGATGTTTTCTACAACTAGAACACGGAGGCGAAACTTGTGACGCCAGA
TGTCGGCCCTTTCCTTCTCACTTGTCCTCCACGACAGGTATCCCCTGGTG
TATCCGCCCTATTTTCAGCGATATTCAATCACCGTACGTTGTACCAATAT
ACATTATTTTCCTGTTCCTTGTAATACCACCAAAACTAGTAGGTCGGAAC
GTGAGGCGAAGGCGCTTCGAGTGGAAGCGGACGATCTGAAGCAAAAGGTG
TCCTCCCTCAGGACGCGGCTAGCCTGTGTACAGGGAAGGCGCCAAGCAGA
GCTCGAGACGGCAAACAAGAAGATTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig19192:845..2522-

>mRNA_H-elongata_contig19192.5311.1 ID=mRNA_H-elongata_contig19192.5311.1|Name=mRNA_H-elongata_contig19192.5311.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig19192:845..2522- (Himanthalia elongata Himel1 dioecious)
ATGCACACGTCAGGGGGGGCACTGCCACCCTGTGAACGCTGCATAATTCT
CTCTGAGGCCGTTCAAGACGCGCGCGCGCGAGCGAAATTACTTGAGCGTC
TCGTGGAGCAGGCCGAAGAGCTCCGCCTTAATCAAGCCGATCAGCTCTCG
CAGCGGACGAGTGCGGATCAGGCGAAAGCAGAAACGATCACCGGTGATGT
TGATTCAATGACGCACGTTGCGGGCTCGAAGGGATCCCAGGCAGTCGACC
GGCGAGAGGCGTCTGGAGCCCCGGCGGCTGTACAGGAGCTTACTGGAAAT
GGCGCGGGAAAGGAAGTCAAGAGCGCAAGGGAAGAGAGAGGCGTGGCGGG
AGGTGGGAGTTCTTCAGAGGAGTTGCTTTCGGCCGCGGAGGCGGTGTGGC
GAATATCGGAGATTGCGCGGGATGCGCTCGAAAAGGAGTTGGACAGGAGG
GGCGAGGCGTTGGCGTCGGCGAAGAGAGCGTCCAAGGAGTTCAAGGAGGC
TTTCTCCAAGCAGATGCACACGTCAGGGGGGGCACTGCCACCCTGTGAAC
GCTGCATAATTCTCTCTGAGGCCGTTCAAGACGCGCGCGCGCGAGCGAAA
TTACTTGAGCGTCTCGTGGAGCAGGCCGAAGAGCTCCGCCTTAATCAAGC
CGATCAGCTCTCGCAGCGGACGAGTGCGGATCAGGCGAAAGCAGAAACGA
TCACCGGTGATGTTGATTCAATGACGCACGTTGCGGGCTCGAAGGGATCC
CAGGCAGTCGACCGGCGAGAGGCGTCTGGAGCCCCGGCGGCTGTACAGGA
GCTTACTGGAAATGGCGCGGGAAAGGAAGTCAAGAGCGCAAGGGAAGAGA
GAGGCGTGGCGGGAGGTGGGAGTTCTTCAGAGGAGTTGCTTTCGGCCGCG
GAGGCGGTGTGGCGAATATCGGAGATTGCGCGGGATGCGCTCGAAAAGGA
GTTGGACAGGAGGGGCGAGGCGTTGGCGTCGGCGAAGAGAGCGTCCAAGG
AGTTCAAGGAGGCTTTCTCCAAGCAGCTCCAAGAGCTTTCGAGCGCGCGT
GCGACATTACGAAGTCAGCAAGCCGAGCTGGAAAGGTGGAAGAGCGGCGC
AGAGAAATCAAGCGCTAAAGAGAAGGACACCCGTCGAGCCCTGGAAAGCG
CGCGCATCGTGACGGGGGACGCCGCGCGCAGCTCCAAGAGCTTTCGAGCG
CGCGTGCGACATTACGAAGTCAGCAAGCCGAGCTGGAAAGGTGGAAGAGC
GGCGCAGAGAAATCAAGCGCTAAAGAGAAGGACACCCGTCGAGCCCTGGA
AAGCGCGCGCATCGTGACGGGGGACGCCGCGCGCAGTAGGTCGGAACGTG
AGGCGAAGGCGCTTCGAGTGGAAGCGGACGATCTGAAGCAAAAGGTGTCC
TCCCTCAGGACGCGGCTAGCCTGTGTACAGGGAAGGCGCCAAGCAGAGCT
CGAGACGGCAAACAAGAAGATTGAGTAGGTCGGAACGTGAGGCGAAGGCG
CTTCGAGTGGAAGCGGACGATCTGAAGCAAAAGGTGTCCTCCCTCAGGAC
GCGGCTAGCCTGTGTACAGGGAAGGCGCCAAGCAGAGCTCGAGACGGCAA
ACAAGAAGATTGAG
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