mRNA_H-elongata_contig19178.5308.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: A0A6H5KIP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP7_9PHAE) HSP 1 Score: 271 bits (694), Expect = 4.430e-83 Identity = 132/164 (80.49%), Postives = 145/164 (88.41%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMWWNPINSKELQAELKRIDAAS 492
R NDPEVEVLKLHHYLGPDVNTAVI+AVL+AL +N NCQALYIQNFN+GFRDEQV ALAKVLR+GNIWCLNAGE+Y V L+ WW+FVE IK TNVTHAYLSEHVIT ELK AMR AIRDNR KH+RHK A+NL+VIRRCTNMWWNPINSK LQAELK +D +
Sbjct: 682 RANDPEVEVLKLHHYLGPDVNTAVIDAVLEALMVNDNCQALYIQNFNEGFRDEQV-GALAKVLRRGNIWCLNAGENYKVKLATWWQFVEAIKNTNVTHAYLSEHVITAELKKAMRKAIRDNRVKHTRHKSAANLEVIRRCTNMWWNPINSKFLQAELKVLDGGN 844
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: D7FZY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY3_ECTSI) HSP 1 Score: 241 bits (616), Expect = 2.090e-75 Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMW 432
R NDPEVEVLKLHHYLGPDVNTAVI+AVL+AL +N NCQALYIQNFN+GFRDEQV ALAKVL +GNIWCLNAGE+Y V L+ WW+FVE IK TNVTHAYLSEHVIT ELK AMR AIRDNR KH+RHK ASNL+VIRRCTNMW
Sbjct: 310 RANDPEVEVLKLHHYLGPDVNTAVIDAVLEALMVNDNCQALYIQNFNEGFRDEQVE-ALAKVLGRGNIWCLNAGENYKVKLATWWQFVEAIKNTNVTHAYLSEHVITAELKKAMRKAIRDNRVKHTRHKSASNLEVIRRCTNMW 452
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: A0A6H5JNB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB8_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.240e-60 Identity = 104/166 (62.65%), Postives = 129/166 (77.71%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMWWNPINSKELQAELKRIDAASFG 498
R +DP V+VLKLH Y+ DV T +I+AVL+AL +N+NCQALYIQN ++GFRDEQ+ LA+VLR+G IWCLNAGE+ + S WW FVE+I+ TNVTHAYLSE + LK AM+ AIR NR KH RH ASN+DVI+RCT+MWWNPI SK+LQAELK + A+ G
Sbjct: 594 RADDPRVKVLKLHDYIPADVGTIIIDAVLEALMINSNCQALYIQNVSNGFRDEQLMR-LAEVLRRGLIWCLNAGENSEIKASTWWNFVEEIQNTNVTHAYLSEGSVPSGLKNAMQKAIRRNRLKHDRHLSASNVDVIQRCTHMWWNPIRSKKLQAELKAAEVAAKG 758
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: A0A835ZG86_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG86_9STRA) HSP 1 Score: 209 bits (532), Expect = 9.770e-60 Identity = 99/157 (63.06%), Postives = 123/157 (78.34%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGN-IWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMWWNPINSKELQAE 468
R + +VEVLKLHHYL PD NTAV++AVLDAL+ NTNCQALY+QNFN G D+Q+ ALA +LR + +WCLN GE Y V+L WW+F E+++ T+VTH YLSEHV+T +LK AMR AIR NRAKH+ HK NL VI RCTNMWWNPIN+++LQ +
Sbjct: 636 RADHRDVEVLKLHHYLSPDANTAVMDAVLDALASNTNCQALYMQNFNSGVTDDQI-DALAAILRTHDRLWCLNLGELYKVTLDRWWKFCEELRGTHVTHMYLSEHVLTADLKTAMRDAIRANRAKHALHKDVDNLAVIERCTNMWWNPINARDLQGD 791
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE) HSP 1 Score: 208 bits (530), Expect = 2.600e-59 Identity = 108/158 (68.35%), Postives = 125/158 (79.11%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMWWNPINSKELQAELK 474
R +DP VEVLKLH+Y+ DV+T VI+AVL+AL +N NCQALYIQN ++G RDEQ+ LAKVLRKGNIWCLNAGE+ + S W +FV++I T VTHAYLSE I LK AMRTAIR NR KH+RHK ASN+ VIRRCTNMWWNPI KELQAELK
Sbjct: 790 RTDDPRVEVLKLHNYIPADVSTPVIDAVLEALMLN-NCQALYIQNVSNGLRDEQLMM-LAKVLRKGNIWCLNAGENSKIKPSTWCDFVKEIDKTGVTHAYLSEECIPIGLKKAMRTAIRANRVKHTRHKSASNVKVIRRCTNMWWNPILCKELQAELK 945
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE) HSP 1 Score: 207 bits (527), Expect = 5.700e-59 Identity = 104/158 (65.82%), Postives = 124/158 (78.48%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMWWNPINSKELQAELK 474
R +DP VEVLKLH+Y+ DV T VI+AVL+AL +N NCQALYIQN ++G RDEQ+ LA+VLRKGNIWCLNAGE+ + S W +FV++I+ T VTHAYLSE I LK AMRTAIR NR KH+RHK ASN+ VIR+CTNMWWNP+ KE QAELK
Sbjct: 729 RTDDPRVEVLKLHNYIPADVCTPVIDAVLEALMLNNNCQALYIQNVSNGLRDEQLMM-LARVLRKGNIWCLNAGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPVGLKKAMRTAIRANRVKHTRHKSASNVKVIRQCTNMWWNPVLCKESQAELK 885
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI) HSP 1 Score: 193 bits (490), Expect = 1.130e-57 Identity = 97/144 (67.36%), Postives = 114/144 (79.17%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMW 432
R +DP VE+LKLH YL DV+T +INAVL AL N+NCQALYIQN + GFRDEQ+R LAKVLR+GNIWCLNAGE+ ++ S WW FVE+IK T+VTHAYLSE I L M+ AIR NRAKH+RHK ASN++VIRRCTNMW
Sbjct: 224 RADDPRVEILKLHDYLPADVSTPIINAVLKALMCNSNCQALYIQNVSIGFRDEQLRM-LAKVLRRGNIWCLNAGENSGITPSAWWWFVEEIKTTSVTHAYLSEECIPCGLTETMQKAIRANRAKHTRHKSASNVEVIRRCTNMW 366
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: A0A7S2G2D6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2D6_9STRA) HSP 1 Score: 183 bits (465), Expect = 4.450e-53 Identity = 89/153 (58.17%), Postives = 111/153 (72.55%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMWWNPINSKEL 459
R N + VLKL YLGP+VNT +I+++LDAL +N+NCQALYIQNFNDG D Q++ L+KVL+ G IWCLN GE+Y ++ W +F + + ATNVTH Y SEHVI+ E K MR IR NRAKHSRH N+ VI+RCTN WWNPI S+ L
Sbjct: 71 RDNHSDAVVLKLKDYLGPEVNTWIIDSILDALMVNSNCQALYIQNFNDGMLDVQLQK-LSKVLQLGRIWCLNIGENYRITPGAWNQFADSLLATNVTHMYASEHVISVEQKTRMRDIIRANRAKHSRHNSIDNIAVIKRCTNCWWNPIQSRSL 222
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE) HSP 1 Score: 175 bits (444), Expect = 7.910e-51 Identity = 90/138 (65.22%), Postives = 108/138 (78.26%), Query Frame = 1
Query: 1 RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIR 414
R +DPEVEVLKLH+Y+ DV+T VI+AVL+AL +N NCQALYIQN ++G RDEQ+ LAKVLR+GNIWCLNAGE+ + S W +FV++I T VTHAYLSE I LK AMRTAIR NR KH+RHK ASN+ VIR
Sbjct: 224 RTDDPEVEVLKLHNYIPADVSTPVIDAVLEALMLNNNCQALYIQNVSNGLRDEQIMM-LAKVLRRGNIWCLNAGENSKIKPSTWRDFVKEIDKTGVTHAYLSEECIPIGLKKAMRTAIRANRVKHTRHKSASNVKVIR 360
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Match: A0A7S0BXF2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BXF2_9STRA) HSP 1 Score: 168 bits (425), Expect = 4.840e-48 Identity = 84/156 (53.85%), Postives = 104/156 (66.67%), Query Frame = 1
Query: 7 NDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFRDEQVRSALAKVLRKGNIWCLNAGESYNVSLSNWWEFVEDIKATNVTHAYLSEHVITPELKIAMRTAIRDNRAKHSRHKIASNLDVIRRCTNMWWNPINSKELQAELK 474
N ++ V KL +L PD V++AVLDAL NTNCQ+LYIQNFN+G RD+QV L +L+KG+IWC+N GE+Y V W +F ++ TNVTH Y SEH I ELK +R IR NR KH H NLDVI +CT+ WWNPIN+K LQ LK
Sbjct: 164 NADDMVVCKLKVWLSPDTPMLVMDAVLDALDNNTNCQSLYIQNFNEGMRDKQVLRLLT-ILKKGHIWCINIGETYKVRSKTWEKFARGLRKTNVTHMYASEHTIDTELKDKIRGIIRQNRMKHRLHISPDNLDVIVQCTHCWWNPINAKALQPVLK 318 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19178.5308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19178.5308.1 >prot_H-elongata_contig19178.5308.1 ID=prot_H-elongata_contig19178.5308.1|Name=mRNA_H-elongata_contig19178.5308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp RLNDPEVEVLKLHHYLGPDVNTAVINAVLDALSMNTNCQALYIQNFNDGFback to top mRNA from alignment at H-elongata_contig19178:313..2298+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19178.5308.1 ID=mRNA_H-elongata_contig19178.5308.1|Name=mRNA_H-elongata_contig19178.5308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1986bp|location=Sequence derived from alignment at H-elongata_contig19178:313..2298+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19178:313..2298+ >mRNA_H-elongata_contig19178.5308.1 ID=mRNA_H-elongata_contig19178.5308.1|Name=mRNA_H-elongata_contig19178.5308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig19178:313..2298+ (Himanthalia elongata Himel1 dioecious)back to top |