mRNA_H-elongata_contig191775.5307.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191775.5307.1
Unique NamemRNA_H-elongata_contig191775.5307.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig191775.5307.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.100e-22
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:  835 GMVDLMRREITAREALLLGPTLRSATGVTCLRLCYNHLKDGGAEAVSSAIENLPSLHTMDLG 1020
            GMVDLMRREITAREALLLGP L +ATGVTCL+LCYNHL+DGGAEAVS AIE  PSLHTMDLG
Sbjct:  287 GMVDLMRREITAREALLLGPILWAATGVTCLKLCYNHLRDGGAEAVSGAIERHPSLHTMDLG 348
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BLAST of mRNA_H-elongata_contig191775.5307.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.160e-22
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:  835 GMVDLMRREITAREALLLGPTLRSATGVTCLRLCYNHLKDGGAEAVSSAIENLPSLHTMDLG 1020
            GMVDLMRREITAREALLLGP L +ATGVTCL+LCYNHL+DGGAEAVS AIE  PSLHTMDLG
Sbjct:  276 GMVDLMRREITAREALLLGPILWAATGVTCLKLCYNHLRDGGAEAVSGAIERHPSLHTMDLG 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191775.5307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK51_ECTSI1.100e-2287.10Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVK7_9PHAE1.160e-2287.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191775contigH-elongata_contig191775:11..1030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D7FK51
KEGG koko:K20523,ko:K20865
KEGG Pathwayko04621,map04621
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size1020
Cds size1020
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930094.4704332-CDS-H-elongata_contig191775:10..10301622930094.4704332-CDS-H-elongata_contig191775:10..1030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191775 11..1030 +
1691679278.0206544-CDS-H-elongata_contig191775:10..10301691679278.0206544-CDS-H-elongata_contig191775:10..1030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191775 11..1030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191775.5307.1prot_H-elongata_contig191775.5307.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191775 11..1030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191775.5307.1

>prot_H-elongata_contig191775.5307.1 ID=prot_H-elongata_contig191775.5307.1|Name=mRNA_H-elongata_contig191775.5307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
SSATAAQQSRCDETDLLALLKRLGLALSPPSTASPRGGNGIRDRDRDKDE
DMDCGGEDMDCGQEEMDCGREEMDASSSKPAPDDESYPPKGPRGSRRGGS
SGVAATAGTGSGAPPRRARQHLRRQLAEGGGDRDRVGGGRSNRLDAREPS
ARRNRGTSIGHESEQRLTRGSAGGGGGCRNGDVGDYVGGKSSSNSGTTSN
DKGNRRAAVSMQTAGEPRSGSIEPGNGRGFGKGVACGVVKAVAGAGNGGS
TAVNREPRKEALQPKGEGGLGTAAAASKGMVDLMRREITAREALLLGPTL
RSATGVTCLRLCYNHLKDGGAEAVSSAIENLPSLHTMDLG
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mRNA from alignment at H-elongata_contig191775:11..1030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191775.5307.1 ID=mRNA_H-elongata_contig191775.5307.1|Name=mRNA_H-elongata_contig191775.5307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-elongata_contig191775:11..1030+ (Himanthalia elongata Himel1 dioecious)
TCCTCGGCGACGGCGGCACAGCAGTCCCGATGCGACGAGACAGACTTGCT
GGCCCTCCTCAAGCGACTCGGCCTGGCACTCTCGCCGCCCTCTACTGCGT
CTCCAAGGGGTGGAAACGGGATCAGAGACAGAGATAGGGACAAAGACGAA
GATATGGACTGCGGGGGGGAAGATATGGACTGCGGACAAGAAGAAATGGA
CTGTGGAAGGGAAGAGATGGACGCCTCCTCGTCTAAGCCCGCGCCGGACG
ACGAATCTTATCCCCCAAAAGGCCCTCGCGGCTCGAGGCGCGGAGGTTCT
TCGGGGGTGGCGGCCACGGCGGGAACGGGATCGGGCGCACCACCACGTCG
CGCGCGACAGCACCTTCGCCGGCAGCTGGCCGAAGGTGGCGGCGACCGCG
ACCGCGTCGGTGGTGGAAGGAGTAACAGGCTAGATGCTCGAGAGCCGAGT
GCTCGCCGGAACCGTGGGACTTCGATCGGGCACGAAAGCGAACAGCGGCT
TACTCGGGGCAGCGCAGGTGGTGGTGGTGGTTGTCGCAATGGTGACGTCG
GTGATTACGTGGGTGGCAAAAGCAGCAGCAACAGTGGTACTACCAGCAAC
GATAAGGGTAATCGACGGGCCGCCGTTTCGATGCAAACCGCGGGTGAACC
GCGGTCGGGAAGCATAGAGCCGGGAAATGGGCGCGGTTTCGGGAAGGGGG
TCGCCTGCGGCGTGGTGAAAGCGGTAGCAGGGGCGGGGAACGGGGGGTCG
ACGGCGGTGAACAGGGAACCTCGCAAGGAGGCCTTGCAGCCGAAGGGCGA
GGGGGGGCTCGGGACGGCGGCGGCCGCCTCCAAGGGTATGGTGGATCTGA
TGCGGCGCGAGATCACGGCGAGAGAAGCGCTGCTGCTAGGACCGACCCTG
CGCTCCGCCACGGGCGTGACGTGCCTCAGATTGTGCTACAACCACCTTAA
GGATGGAGGTGCCGAGGCGGTGTCGAGCGCGATCGAGAACCTCCCGTCTT
TGCACACAATGGACTTGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig191775:11..1030+

>mRNA_H-elongata_contig191775.5307.1 ID=mRNA_H-elongata_contig191775.5307.1|Name=mRNA_H-elongata_contig191775.5307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2040bp|location=Sequence derived from alignment at H-elongata_contig191775:11..1030+ (Himanthalia elongata Himel1 dioecious)
TCCTCGGCGACGGCGGCACAGCAGTCCCGATGCGACGAGACAGACTTGCT
GGCCCTCCTCAAGCGACTCGGCCTGGCACTCTCGCCGCCCTCTACTGCGT
CTCCAAGGGGTGGAAACGGGATCAGAGACAGAGATAGGGACAAAGACGAA
GATATGGACTGCGGGGGGGAAGATATGGACTGCGGACAAGAAGAAATGGA
CTGTGGAAGGGAAGAGATGGACGCCTCCTCGTCTAAGCCCGCGCCGGACG
ACGAATCTTATCCCCCAAAAGGCCCTCGCGGCTCGAGGCGCGGAGGTTCT
TCGGGGGTGGCGGCCACGGCGGGAACGGGATCGGGCGCACCACCACGTCG
CGCGCGACAGCACCTTCGCCGGCAGCTGGCCGAAGGTGGCGGCGACCGCG
ACCGCGTCGGTGGTGGAAGGAGTAACAGGCTAGATGCTCGAGAGCCGAGT
GCTCGCCGGAACCGTGGGACTTCGATCGGGCACGAAAGCGAACAGCGGCT
TACTCGGGGCAGCGCAGGTGGTGGTGGTGGTTGTCGCAATGGTGACGTCG
GTGATTACGTGGGTGGCAAAAGCAGCAGCAACAGTGGTACTACCAGCAAC
GATAAGGGTAATCGACGGGCCGCCGTTTCGATGCAAACCGCGGGTGAACC
GCGGTCGGGAAGCATAGAGCCGGGAAATGGGCGCGGTTTCGGGAAGGGGG
TCGCCTGCGGCGTGGTGAAAGCGGTAGCAGGGGCGGGGAACGGGGGGTCG
ACGGCGGTGAACAGGGAACCTCGCAAGGAGGCCTTGCAGCCGAAGGGCGA
GGGGGGGCTCGGGACGGCGGCGGCCGCCTCCAAGGGTATGGTGGATCTGA
TGCGGCGCGAGATCACGGCGAGAGAAGCGCTGCTGCTAGGACCGACCCTG
CGCTCCGCCACGGGCGTGACGTGCCTCAGATTGTGCTACAACCACCTTAA
GGATGGAGGTGCCGAGGCGGTGTCGAGCGCGATCGAGAACCTCCCGTCTT
TGCACACAATGGACTTGGGTTCCTCGGCGACGGCGGCACAGCAGTCCCGA
TGCGACGAGACAGACTTGCTGGCCCTCCTCAAGCGACTCGGCCTGGCACT
CTCGCCGCCCTCTACTGCGTCTCCAAGGGGTGGAAACGGGATCAGAGACA
GAGATAGGGACAAAGACGAAGATATGGACTGCGGGGGGGAAGATATGGAC
TGCGGACAAGAAGAAATGGACTGTGGAAGGGAAGAGATGGACGCCTCCTC
GTCTAAGCCCGCGCCGGACGACGAATCTTATCCCCCAAAAGGCCCTCGCG
GCTCGAGGCGCGGAGGTTCTTCGGGGGTGGCGGCCACGGCGGGAACGGGA
TCGGGCGCACCACCACGTCGCGCGCGACAGCACCTTCGCCGGCAGCTGGC
CGAAGGTGGCGGCGACCGCGACCGCGTCGGTGGTGGAAGGAGTAACAGGC
TAGATGCTCGAGAGCCGAGTGCTCGCCGGAACCGTGGGACTTCGATCGGG
CACGAAAGCGAACAGCGGCTTACTCGGGGCAGCGCAGGTGGTGGTGGTGG
TTGTCGCAATGGTGACGTCGGTGATTACGTGGGTGGCAAAAGCAGCAGCA
ACAGTGGTACTACCAGCAACGATAAGGGTAATCGACGGGCCGCCGTTTCG
ATGCAAACCGCGGGTGAACCGCGGTCGGGAAGCATAGAGCCGGGAAATGG
GCGCGGTTTCGGGAAGGGGGTCGCCTGCGGCGTGGTGAAAGCGGTAGCAG
GGGCGGGGAACGGGGGGTCGACGGCGGTGAACAGGGAACCTCGCAAGGAG
GCCTTGCAGCCGAAGGGCGAGGGGGGGCTCGGGACGGCGGCGGCCGCCTC
CAAGGGTATGGTGGATCTGATGCGGCGCGAGATCACGGCGAGAGAAGCGC
TGCTGCTAGGACCGACCCTGCGCTCCGCCACGGGCGTGACGTGCCTCAGA
TTGTGCTACAACCACCTTAAGGATGGAGGTGCCGAGGCGGTGTCGAGCGC
GATCGAGAACCTCCCGTCTTTGCACACAATGGACTTGGGT
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