mRNA_H-elongata_contig19175.5306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19175.5306.1
Unique NamemRNA_H-elongata_contig19175.5306.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19175.5306.1 vs. uniprot
Match: D7G868_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G868_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.860e-71
Identity = 143/294 (48.64%), Postives = 186/294 (63.27%), Query Frame = 1 
Query:    1 SISTWEIWWDIERERRGIHAASSSRFPGSMVREDIPMGVEENVERLCVAAFLRGHVPKGLMPPGTTPEESYHRYLVLPPSLAKLRHEQLCREASRPISSALRSRGFSLVRHLLPLSKLEHLFTEAGADEEETLAAVAVARELSPLSRSRCETESGSWSGK-LFSPLSSFTIQSLDGIQKNGGKKNWHAAHQKLSGTNVNNAKGEAEEECEASGKEMVTMTT-------------RAKDKRLPRISVEGLGLHGSMGEKYGICGGWDPRRWTLRPEEWFKPPGSMIKRRWENGAK 840
            S S WE  WD ERE+RG+   + SRFPGS+VR+D+P G+ E VERLC AAFLRGHVP GLMP GTTPEE+Y RYL LPPSLAK+RHEQLC EAS+P++SALR+RG++++  LLPLSKLEHLF++AG+   ETLAAV++A E+ P    R     G+ SG  LFSPLS F+ + L   +            ++  G + +    E+  +  + G   VT  +              AK K L RIS++GL L           G WDP R+T RPEEW +PP S+IK+RW++ AK
Sbjct:  376 STSGWESVWDAEREKRGLTGDAGSRFPGSLVRQDMPSGLAETVERLCAAAFLRGHVPHGLMPKGTTPEEAYRRYLELPPSLAKIRHEQLCTEASQPVASALRARGYTVLEQLLPLSKLEHLFSQAGSGASETLAAVSIASEIKP---KRGVGGCGNGSGDDLFSPLSPFSRRCLARSRAAPISTQRSPRSRRREGLD-DCVSDESVRKDGSRGSGRVTSRSXXXXXXXXXXXSGEAKKKGLLRISMQGLELPSRAAGMEQGNGRWDPSRYTSRPEEWIRPPPSVIKQRWDDSAK 665
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BLAST of mRNA_H-elongata_contig19175.5306.1 vs. uniprot
Match: A0A836CBX2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.890e-17
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 1 
Query:   34 ERERRGIHAASSSRFPGSMV----------------------REDIPMGVEENVERLCVAAFLRGHVPKGLMPPGTTPEESYHRYLVLPPSLAKLRHEQLCREASRPISSALRSRGFSLVRHLLPLSKLEHLFTEAGADEEETLAAVAVAREL 426
            ER+ R +  A+S+RF G+                          DIP G+ +   RL  AA LR  VP   MP GT+ E ++  YL LPPSLAK++HEQ   +A+RP ++AL + GF L+ HL+P+SK+  +  E G      LAA  +A EL
Sbjct: 1289 ERKARHLDHAASTRFAGASALTXXXXXXXXXXXXXXXXXXXXXRDIPGGLHDCTGRLLRAALLRSFVPS-TMPAGTSAEIAFRHYLALPPSLAKIKHEQDAAKAARPHAAALSAAGFHLIGHLMPISKMARVMQELGVPAAAILAAQDLAEEL 1440
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19175.5306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G868_ECTSI1.860e-7148.64C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A836CBX2_9STRA4.890e-1737.91C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19175contigH-elongata_contig19175:402..1580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-12_001290.1
Exons2
Model size840
Cds size840
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930094.3898091-CDS-H-elongata_contig19175:401..10231622930094.3898091-CDS-H-elongata_contig19175:401..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19175 402..1023 -
1691679277.999404-CDS-H-elongata_contig19175:401..10231691679277.999404-CDS-H-elongata_contig19175:401..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19175 402..1023 -
1622930094.4111943-CDS-H-elongata_contig19175:1362..15801622930094.4111943-CDS-H-elongata_contig19175:1362..1580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19175 1363..1580 -
1691679278.0097716-CDS-H-elongata_contig19175:1362..15801691679278.0097716-CDS-H-elongata_contig19175:1362..1580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19175 1363..1580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19175.5306.1prot_H-elongata_contig19175.5306.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19175 402..1580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19175.5306.1

>prot_H-elongata_contig19175.5306.1 ID=prot_H-elongata_contig19175.5306.1|Name=mRNA_H-elongata_contig19175.5306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
SISTWEIWWDIERERRGIHAASSSRFPGSMVREDIPMGVEENVERLCVAA
FLRGHVPKGLMPPGTTPEESYHRYLVLPPSLAKLRHEQLCREASRPISSA
LRSRGFSLVRHLLPLSKLEHLFTEAGADEEETLAAVAVARELSPLSRSRC
ETESGSWSGKLFSPLSSFTIQSLDGIQKNGGKKNWHAAHQKLSGTNVNNA
KGEAEEECEASGKEMVTMTTRAKDKRLPRISVEGLGLHGSMGEKYGICGG
WDPRRWTLRPEEWFKPPGSMIKRRWENGAK
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mRNA from alignment at H-elongata_contig19175:402..1580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19175.5306.1 ID=mRNA_H-elongata_contig19175.5306.1|Name=mRNA_H-elongata_contig19175.5306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1179bp|location=Sequence derived from alignment at H-elongata_contig19175:402..1580- (Himanthalia elongata Himel1 dioecious)
TCCATAAGTACCTGGGAGATCTGGTGGGATATCGAACGAGAGAGACGTGG
AATACACGCGGCTAGTTCTTCACGCTTCCCTGGATCGATGGTGCGCGAGG
ACATACCCATGGGCGTCGAAGAAAATGTAGAGCGGCTGTGTGTAGCGGCG
TTTTTGAGGGGGCACGTTCCAAAGGGGTTGATGCCCCCGGGTACAACACC
AGAGGAATCGTATCACAGGTGACTTGAGAATCAAATCGGCGGTACTAATT
TTAGTATATGGTACGTATAGGGGCAGGAGTGGCGGTTGATGCCGCAAGAG
AGAGTTCTAGTTTACTCTCGACTACCCGACCCCATAAAATAAGAGATATG
TGACTTAGGCAAACAATCAACAATGCTTAATAGTGTTGGAAGTTAACATG
TATGCTCACCAGGTTCGTGGCCTTCTTTAGCGTGTTTGACGTTACACCAA
AAAAAAGAGGTCATCATGTCCAGTAGCCTCGACGAAGTCTTAACCGTGCC
GTATTCGTGGTTGGACTATATTGTTGCCCAACGCTGCAACCCTGTTCGTC
TTTCCAGGTATCTGGTCCTTCCTCCATCTTTAGCAAAACTTCGCCACGAA
CAACTCTGCCGAGAGGCTTCTAGACCAATATCCTCCGCGCTGCGCTCTCG
TGGGTTCAGCCTCGTCCGCCATCTCCTCCCTCTTTCCAAACTAGAACATC
TCTTTACCGAGGCTGGGGCGGACGAAGAGGAAACGCTTGCCGCAGTTGCT
GTCGCGCGTGAACTAAGCCCTTTATCGAGATCGCGCTGTGAAACCGAATC
CGGAAGCTGGAGTGGAAAATTATTCTCTCCGCTTTCTTCTTTTACTATCC
AGAGCTTGGATGGGATACAGAAAAATGGAGGGAAAAAAAATTGGCATGCT
GCCCATCAGAAATTGAGCGGAACTAACGTCAATAATGCTAAAGGTGAAGC
AGAAGAAGAGTGCGAAGCAAGCGGCAAAGAAATGGTCACAATGACCACCA
GAGCAAAGGACAAGAGACTACCAAGGATCAGCGTGGAAGGCCTGGGGTTA
CATGGCTCCATGGGAGAAAAATATGGTATATGTGGAGGCTGGGACCCTAG
GAGGTGGACTTTGCGCCCGGAAGAATGGTTCAAACCTCCTGGTAGTATGA
TCAAACGACGCTGGGAAAATGGGGCGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig19175:402..1580-

>mRNA_H-elongata_contig19175.5306.1 ID=mRNA_H-elongata_contig19175.5306.1|Name=mRNA_H-elongata_contig19175.5306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig19175:402..1580- (Himanthalia elongata Himel1 dioecious)
TCCATAAGTACCTGGGAGATCTGGTGGGATATCGAACGAGAGAGACGTGG
AATACACGCGGCTAGTTCTTCACGCTTCCCTGGATCGATGGTGCGCGAGG
ACATACCCATGGGCGTCGAAGAAAATGTAGAGCGGCTGTGTGTAGCGGCG
TTTTTGAGGGGGCACGTTCCAAAGGGGTTGATGCCCCCGGGTACAACACC
AGAGGAATCGTATCACAGTCCATAAGTACCTGGGAGATCTGGTGGGATAT
CGAACGAGAGAGACGTGGAATACACGCGGCTAGTTCTTCACGCTTCCCTG
GATCGATGGTGCGCGAGGACATACCCATGGGCGTCGAAGAAAATGTAGAG
CGGCTGTGTGTAGCGGCGTTTTTGAGGGGGCACGTTCCAAAGGGGTTGAT
GCCCCCGGGTACAACACCAGAGGAATCGTATCACAGGTATCTGGTCCTTC
CTCCATCTTTAGCAAAACTTCGCCACGAACAACTCTGCCGAGAGGCTTCT
AGACCAATATCCTCCGCGCTGCGCTCTCGTGGGTTCAGCCTCGTCCGCCA
TCTCCTCCCTCTTTCCAAACTAGAACATCTCTTTACCGAGGCTGGGGCGG
ACGAAGAGGAAACGCTTGCCGCAGTTGCTGTCGCGCGTGAACTAAGCCCT
TTATCGAGATCGCGCTGTGAAACCGAATCCGGAAGCTGGAGTGGAAAATT
ATTCTCTCCGCTTTCTTCTTTTACTATCCAGAGCTTGGATGGGATACAGA
AAAATGGAGGGAAAAAAAATTGGCATGCTGCCCATCAGAAATTGAGCGGA
ACTAACGTCAATAATGCTAAAGGTGAAGCAGAAGAAGAGTGCGAAGCAAG
CGGCAAAGAAATGGTCACAATGACCACCAGAGCAAAGGACAAGAGACTAC
CAAGGATCAGCGTGGAAGGCCTGGGGTTACATGGCTCCATGGGAGAAAAA
TATGGTATATGTGGAGGCTGGGACCCTAGGAGGTGGACTTTGCGCCCGGA
AGAATGGTTCAAACCTCCTGGTAGTATGATCAAACGACGCTGGGAAAATG
GGGCGAAGGTATCTGGTCCTTCCTCCATCTTTAGCAAAACTTCGCCACGA
ACAACTCTGCCGAGAGGCTTCTAGACCAATATCCTCCGCGCTGCGCTCTC
GTGGGTTCAGCCTCGTCCGCCATCTCCTCCCTCTTTCCAAACTAGAACAT
CTCTTTACCGAGGCTGGGGCGGACGAAGAGGAAACGCTTGCCGCAGTTGC
TGTCGCGCGTGAACTAAGCCCTTTATCGAGATCGCGCTGTGAAACCGAAT
CCGGAAGCTGGAGTGGAAAATTATTCTCTCCGCTTTCTTCTTTTACTATC
CAGAGCTTGGATGGGATACAGAAAAATGGAGGGAAAAAAAATTGGCATGC
TGCCCATCAGAAATTGAGCGGAACTAACGTCAATAATGCTAAAGGTGAAG
CAGAAGAAGAGTGCGAAGCAAGCGGCAAAGAAATGGTCACAATGACCACC
AGAGCAAAGGACAAGAGACTACCAAGGATCAGCGTGGAAGGCCTGGGGTT
ACATGGCTCCATGGGAGAAAAATATGGTATATGTGGAGGCTGGGACCCTA
GGAGGTGGACTTTGCGCCCGGAAGAATGGTTCAAACCTCCTGGTAGTATG
ATCAAACGACGCTGGGAAAATGGGGCGAAG
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