mRNA_H-elongata_contig191636.5301.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191636.5301.1
Unique NamemRNA_H-elongata_contig191636.5301.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191636.5301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191636contigH-elongata_contig191636:604..1101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930094.075566-CDS-H-elongata_contig191636:603..11011622930094.075566-CDS-H-elongata_contig191636:603..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191636 604..1101 +
1691679277.9104285-CDS-H-elongata_contig191636:603..11011691679277.9104285-CDS-H-elongata_contig191636:603..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191636 604..1101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191636.5301.1prot_H-elongata_contig191636.5301.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191636 604..1101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191636.5301.1

>prot_H-elongata_contig191636.5301.1 ID=prot_H-elongata_contig191636.5301.1|Name=mRNA_H-elongata_contig191636.5301.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
LKIEITKFSGKIYFLVFEKELLLYLTNYDLDAVLMSDVHIPVGDVEVPRR
ELTARGFTASKISDHSTALALLRSVLTRQTDKEIVLRAVSPVKAWKEIKK
SYAFNTLTSMLELFDVFYETQFSPGDNPKHVLSRLEDIVKTLTSFDVRIP
TPMVLAFFIRFLPSDY
back to top

mRNA from alignment at H-elongata_contig191636:604..1101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191636.5301.1 ID=mRNA_H-elongata_contig191636.5301.1|Name=mRNA_H-elongata_contig191636.5301.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig191636:604..1101+ (Himanthalia elongata Himel1 dioecious)
CTCAAAATCGAGATAACGAAGTTCTCTGGAAAAATATATTTCCTAGTGTT
TGAGAAGGAGCTGCTCCTGTATCTTACGAACTACGACCTGGATGCTGTGC
TGATGTCCGATGTGCATATTCCTGTGGGGGATGTGGAAGTCCCGCGTAGA
GAGTTGACTGCGCGAGGATTCACTGCTTCGAAAATAAGTGATCACTCGAC
GGCTCTGGCGCTCTTGAGATCTGTCCTAACTAGGCAGACCGACAAAGAGA
TAGTGCTGCGTGCAGTTTCTCCTGTAAAAGCTTGGAAAGAAATTAAAAAG
TCATATGCATTCAACACTCTGACCTCTATGTTGGAGTTGTTTGATGTATT
CTATGAGACACAGTTCTCCCCGGGAGATAACCCCAAGCACGTGCTGTCAC
GGTTGGAGGATATAGTCAAGACTCTAACATCTTTTGACGTACGCATCCCC
ACACCAATGGTGCTAGCGTTCTTTATTCGTTTTCTGCCGAGCGACTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig191636:604..1101+

>mRNA_H-elongata_contig191636.5301.1 ID=mRNA_H-elongata_contig191636.5301.1|Name=mRNA_H-elongata_contig191636.5301.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig191636:604..1101+ (Himanthalia elongata Himel1 dioecious)
CTCAAAATCGAGATAACGAAGTTCTCTGGAAAAATATATTTCCTAGTGTT
TGAGAAGGAGCTGCTCCTGTATCTTACGAACTACGACCTGGATGCTGTGC
TGATGTCCGATGTGCATATTCCTGTGGGGGATGTGGAAGTCCCGCGTAGA
GAGTTGACTGCGCGAGGATTCACTGCTTCGAAAATAAGTGATCACTCGAC
GGCTCTGGCGCTCTTGAGATCTGTCCTAACTAGGCAGACCGACAAAGAGA
TAGTGCTGCGTGCAGTTTCTCCTGTAAAAGCTTGGAAAGAAATTAAAAAG
TCATATGCATTCAACACTCTGACCTCTATGTTGGAGTTGTTTGATGTATT
CTATGAGACACAGTTCTCCCCGGGAGATAACCCCAAGCACGTGCTGTCAC
GGTTGGAGGATATAGTCAAGACTCTAACATCTTTTGACGTACGCATCCCC
ACACCAATGGTGCTAGCGTTCTTTATTCGTTTTCTGCCGAGCGACTACCT
CAAAATCGAGATAACGAAGTTCTCTGGAAAAATATATTTCCTAGTGTTTG
AGAAGGAGCTGCTCCTGTATCTTACGAACTACGACCTGGATGCTGTGCTG
ATGTCCGATGTGCATATTCCTGTGGGGGATGTGGAAGTCCCGCGTAGAGA
GTTGACTGCGCGAGGATTCACTGCTTCGAAAATAAGTGATCACTCGACGG
CTCTGGCGCTCTTGAGATCTGTCCTAACTAGGCAGACCGACAAAGAGATA
GTGCTGCGTGCAGTTTCTCCTGTAAAAGCTTGGAAAGAAATTAAAAAGTC
ATATGCATTCAACACTCTGACCTCTATGTTGGAGTTGTTTGATGTATTCT
ATGAGACACAGTTCTCCCCGGGAGATAACCCCAAGCACGTGCTGTCACGG
TTGGAGGATATAGTCAAGACTCTAACATCTTTTGACGTACGCATCCCCAC
ACCAATGGTGCTAGCGTTCTTTATTCGTTTTCTGCCGAGCGACTAC
back to top