mRNA_H-elongata_contig191527.5298.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191527.5298.1
Unique NamemRNA_H-elongata_contig191527.5298.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig191527.5298.1 vs. uniprot
Match: D8LHK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK6_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.080e-27
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 VPEILRHKRLRVVFTTEIHGYNLELLYSHCRTVAPCLLVVEAENGAVIGGFCSDPWQ 171
            VPEILRHKRLRVVFTTEIHGYNL+LLYSHCRTV+P LLVVEA NG ++GGFCSD WQ
Sbjct:  399 VPEILRHKRLRVVFTTEIHGYNLDLLYSHCRTVSPSLLVVEAANGVILGGFCSDSWQ 455
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BLAST of mRNA_H-elongata_contig191527.5298.1 vs. uniprot
Match: UPI00186AE43F (MTOR-associated protein MEAK7 n=1 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186AE43F)

HSP 1 Score: 52.4 bits (124), Expect = 2.930e-6
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 VPEILRHKRLRVVFTTEIHGYNLELLYSHCRTVAPCLLVVEAENGAVIGGFCSDPWQVK 177
            +P  L+H   +++F+++IHGYN   L  +     PCLLVV+  +G + GGF S  W VK
Sbjct:  260 LPTKLQHT-WKLIFSSQIHGYNFAKLCGNIVGRGPCLLVVKDRDGYIFGGFSSHSWAVK 317
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BLAST of mRNA_H-elongata_contig191527.5298.1 vs. uniprot
Match: G3WVI3_SARHA (TLDc domain-containing protein n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3WVI3_SARHA)

HSP 1 Score: 51.2 bits (121), Expect = 7.500e-6
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:   31 RVVFTTEIHGYNLELLYSHCRTVAPCLLVVEAENGAVIGGFCSDPWQVK 177
            R++F+++IHGYN   L        PCLLVV+ ++G + GGF S  W VK
Sbjct:  268 RLIFSSQIHGYNFAKLCGSIIGRGPCLLVVKDKDGYIFGGFSSLSWAVK 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191527.5298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHK6_ECTSI4.080e-2785.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00186AE43F2.930e-640.68MTOR-associated protein MEAK7 n=1 Tax=Trichosurus ... [more]
G3WVI3_SARHA7.500e-644.90TLDc domain-containing protein n=1 Tax=Sarcophilus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191527contigH-elongata_contig191527:2..196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.5e-23
Seed eggNOG ortholog2880.D8LHK6
Preferred nameTBC1D24
KEGG koko:K21841
GOsGO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0008047,GO:0008150,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010605,GO:0010646,GO:0010647,GO:0010720,GO:0010769,GO:0010770,GO:0010941,GO:0010975,GO:0010976,GO:0016020,GO:0016043,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030234,GO:0030334,GO:0030335,GO:0030424,GO:0030695,GO:0031175,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031594,GO:0031644,GO:0031646,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0033267,GO:0040012,GO:0040017,GO:0042391,GO:0042995,GO:0043005,GO:0043085,GO:0043087,GO:0043195,GO:0043547,GO:0043679,GO:0044057,GO:0044093,GO:0044306,GO:0044424,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050804,GO:0050806,GO:0051049,GO:0051051,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060341,GO:0060548,GO:0060589,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0098693,GO:0098772,GO:0098793,GO:0098815,GO:0098916,GO:0099177,GO:0099536,GO:0099537,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0150034,GO:1900006,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1902083,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903203,GO:1903204,GO:1903421,GO:1903422,GO:2000026,GO:2000145,GO:2000147,GO:2000169,GO:2000463,GO:2001222,GO:2001224
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5142@1,KOG2801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTLDc domain
Ec32 orthologEc-10_002240.1
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.686783-CDS-H-elongata_contig191527:1..1961622930093.686783-CDS-H-elongata_contig191527:1..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191527 2..196 +
1691679277.7773712-CDS-H-elongata_contig191527:1..1961691679277.7773712-CDS-H-elongata_contig191527:1..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191527 2..196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191527.5298.1prot_H-elongata_contig191527.5298.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191527 2..196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191527.5298.1

>prot_H-elongata_contig191527.5298.1 ID=prot_H-elongata_contig191527.5298.1|Name=mRNA_H-elongata_contig191527.5298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
VPEILRHKRLRVVFTTEIHGYNLELLYSHCRTVAPCLLVVEAENGAVIGG
FCSDPWQVKITCYR*
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mRNA from alignment at H-elongata_contig191527:2..196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191527.5298.1 ID=mRNA_H-elongata_contig191527.5298.1|Name=mRNA_H-elongata_contig191527.5298.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig191527:2..196+ (Himanthalia elongata Himel1 dioecious)
GTGCCAGAGATCTTGCGACATAAGCGTCTTCGTGTGGTGTTCACCACCGA
AATCCACGGCTACAACCTGGAACTCCTGTACAGCCACTGCAGGACGGTTG
CCCCTTGTTTGCTAGTCGTGGAGGCGGAAAACGGCGCCGTCATCGGGGGC
TTCTGCTCTGACCCCTGGCAGGTAAAAATTACATGTTATCGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig191527:2..196+

>mRNA_H-elongata_contig191527.5298.1 ID=mRNA_H-elongata_contig191527.5298.1|Name=mRNA_H-elongata_contig191527.5298.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig191527:2..196+ (Himanthalia elongata Himel1 dioecious)
GTGCCAGAGATCTTGCGACATAAGCGTCTTCGTGTGGTGTTCACCACCGA
AATCCACGGCTACAACCTGGAACTCCTGTACAGCCACTGCAGGACGGTTG
CCCCTTGTTTGCTAGTCGTGGAGGCGGAAAACGGCGCCGTCATCGGGGGC
TTCTGCTCTGACCCCTGGCAGGTAAAAATTACATGTTATCGTTAAGTGCC
AGAGATCTTGCGACATAAGCGTCTTCGTGTGGTGTTCACCACCGAAATCC
ACGGCTACAACCTGGAACTCCTGTACAGCCACTGCAGGACGGTTGCCCCT
TGTTTGCTAGTCGTGGAGGCGGAAAACGGCGCCGTCATCGGGGGCTTCTG
CTCTGACCCCTGGCAGGTAAAAATTACATGTTATCGTTAA
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