mRNA_H-elongata_contig191487.5297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191487.5297.1
Unique NamemRNA_H-elongata_contig191487.5297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.390e-56
Identity = 142/394 (36.04%), Postives = 198/394 (50.25%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKR----AKHVELHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  AA+++L ++NT+F TPK G      +    KE HR  LD+IL+RQ DRRLVRN +V       SDH LV  ++R   R A N R     G   +  D   L  D   RA       N+ P +  +         A+   A++   A +I P   +    +G      AQ  + +A         +LR   ++  L   LK   KA ++    A+   L  F   +       +R+ DQAG Y+H+K++++EGKR   S  IK+  G +LRD      RW  WF +LLN K PT+D    D ++Q P   PL   P+L EVEEAV  + N KAVG D++  EL+KL L      L+ FH IVV VWQ   VP
Sbjct:   16 DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPL-ARSARGKGGWYTSEAQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVP 403          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.290e-56
Identity = 142/394 (36.04%), Postives = 198/394 (50.25%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKR----AKHVELHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  AA+++L ++NT+F TPK G      +    KE HR  LD+IL+RQ DRRLVRN +V       SDH LV  ++R   R A N R     G   +  D   L  D   RA       N+ P +  +         A+   A++   A +I P   +    +G      AQ  + +A         +LR   ++  L   LK   KA ++    A+   L  F   +       +R+ DQAG Y+H+K++++EGKR   S  IK+  G +LRD      RW  WF +LLN K PT+D    D ++Q P   PL   P+L EVEEAV  + N KAVG D++  EL+KL L      L+ FH IVV VWQ   VP
Sbjct:  154 DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPL-ARSARGKGGWYTSEAQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVP 541          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.710e-56
Identity = 142/394 (36.04%), Postives = 198/394 (50.25%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKR----AKHVELHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  AA+++L ++NT+F TPK G      +    KE HR  LD+IL+RQ DRRLVRN +V       SDH LV  ++R   R A N R     G   +  D   L  D   RA       N+ P +  +         A+   A++   A +I P   +    +G      AQ  + +A         +LR   ++  L   LK   KA ++    A+   L  F   +       +R+ DQAG Y+H+K++++EGKR   S  IK+  G +LRD      RW  WF +LLN K PT+D    D ++Q P   PL   P+L EVEEAV  + N KAVG D++  EL+KL L      L+ FH IVV VWQ   VP
Sbjct:  266 DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPL-ARSARGKGGWYTSEAQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVP 653          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.810e-55
Identity = 141/394 (35.79%), Postives = 197/394 (50.00%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKR----AKHVELHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  AA+++L ++NT+F TPK G      +    KE HR  LD+IL+RQ DRRL RN +V       SDH LV  ++R   R A N R     G   +  D   L  D   RA       N+ P +  +         A+   A++   A +I P   +    +G      AQ  + +A         +LR   ++  L   LK   KA ++    A+   L  F   +       +R+ DQAG Y+H+K++++EGKR   S  IK+  G +LRD      RW  WF +LLN K PT+D    D ++Q P   PL   P+L EVEEAV  + N KAVG D++  EL+KL L      L+ FH IVV VWQ   VP
Sbjct:  387 DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLERNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPL-ARSARGKGGWYTSEAQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVP 774          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5K6T0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T0_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.430e-53
Identity = 138/388 (35.57%), Postives = 199/388 (51.29%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITV-HPKMK-SDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDS--------TFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKRAKHVELHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIV 1134
            D +++G YGRD +N+NG RLL  A++++L + NT+F TPK GG    F     K   ++RLD+IL+RQ DRRLVRN++V H   K S+H LV  ++RL  R A N R+    G   +  D   L  D+  R        ++LP +        T A     V S A+  A + R+        R KR T        R+  RL +            R  P + +L+  LK   K    A+   L  F+  +       +R+ DQAG Y+H+K++++EGKR   S  IK+  G +LRD   I  RW  WF +LLN K PT+D    D +++ P   PL   P+L EVEEAV ++ N KAVG D++  EL+KL L     +L+ F+  V
Sbjct:  132 DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRLVRNVSVKHVNFKDSEHDLVLTTVRLPPRVAPNRRVRGNSGSSRIRIDLERLRKDKHLRDAFQNRASSRLPPTALRRPTGETAAELTATVMSAAAETAPLAREAGT-----RAKRST--------RSPKRLTRLIRPSSNCVGPQRTAPFEATLKAMLKAARKKRSIARWRALEPFVEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPMFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFYATV 504          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.540e-52
Identity = 135/390 (34.62%), Postives = 193/390 (49.49%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKRAKHVELHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  A++++L + NT+F TPK GG    F     K   ++RLD+IL+RQ DRR VRN++V       SDH LV  ++RL  R A N R+        +  D   L  D+  R        ++ P +                 A+ R T             +    E   AQ +LR A           +    + +L+  LK   K    A+   L +F   +       +R+ DQAG Y+H+K++++EGKR   S  IK+  G +LRD   I  RW  WF +LLN K PT+D    D +++ P   PL   P+L EVEEAV ++ N KAVG D++  EL+KL L     +L+ FH IVV VWQ   VP
Sbjct:  331 DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLRPRVAPNRRVRGNNRSSRIRIDLERLRKDKHLRVAFQNRASSRPPPT-----------------ALRRPTGETAAELTATHEISEASKEIKAAQQQLRGA----------SKNSACEATLKAMLKAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVP 691          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5K6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.990e-50
Identity = 136/414 (32.85%), Postives = 202/414 (48.79%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTR--------------------GFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKRAKHVE----LHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  A++++L + NT+F TP+ GG    F     K   ++RLD+IL+RQ DRR VRN++V       SD  LV  ++RL  R A N R+    G   +  D   L  D+  R        ++ P +            A+   A +   A +  P   +R + R                    G      AQ  +  A    +    +LR   ++ +    LK   KA ++ + +     L +F   +       +R+ DQAG Y+H+K++++EGKR   S  IK+  G +LRD   I  RW  WF +LLN K PT+D    D +++ P   PL   P+L EVEEAV ++ N KAVG D++  EL+KL L     +L+ FH IVV VWQ   VP
Sbjct:  149 DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPE-GGVQHTFRSSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDQYLVLTTVRLSPRVAPNRRVRGNSGSSRIRIDLERLRKDKHLRVAFQNRASSRPPPTALRR---PTGETAAELTATVMSAAAETAPL-ARRCSRRXXXXXXXXXXXXXXXXXXXXGGWYTSEAQHEISDASKEIKAAQQQLRGASKNSACEATLKAMLKAARKKRSIARWRALETFFESNVRQLEKKSREGDQAGRYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVP 556          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5JM98_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM98_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 7.050e-47
Identity = 133/394 (33.76%), Postives = 192/394 (48.73%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKRAKHVE----LHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  AA+ +L + NT+F TPK GG    F     K   ++RLD+IL+RQ DRR VRN++V       SDH LV  ++RL  R A N R     G   +  D   L  D+  R        ++ P +      P   + A   A ++   A      R  R   RG+     AQ  + +A         +LR   ++ +    LK   KA ++ + +     L +FL  +        R+ DQAG Y+H+K+++                G +LR+   I  RW  WF +LLN K PT+D    D +++ P   PL   P+L EVEEAV ++ N KAVG D++  EL+KL L     +L+ FH IVV VWQ   VP
Sbjct:  211 DAKIMGAYGRDIMNNNGERLLGLAADTQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRARGNSGSSRIRIDLERLRKDKHLRVAFQNRASSRPPPTALRR--PTGETAAELTATVMSAAAETARLARCAR-GQRGWYTSE-AQHEISEASKXXXAXQQQLRGASKNSAFEATLKAMLKAARKKRSIATWRALETFLEGYVRKLEKKCREVDQAGFYRHLKMID---------------DGKVLRNPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMTNRKAVGPDDLQAELIKLLLDADQGLLREFHAIVVDVWQTGDVP 583          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 8.760e-47
Identity = 128/390 (32.82%), Postives = 188/390 (48.21%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVH--PKMKSDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKRAKHVELHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  A++++L + NT+  TPK GG    F     K   ++RLD IL+RQ DRR VRN++V        DH LV  ++R   R A + R+        +  D   L  D+  R      V ++ P +            A+   A +   A +  P                    L  A++                +L+  LK   K  KR+  ++  +F   +       +R+ DQAG Y+H+K++++EGKR   S  IK+  G +LRD   I  RW  WF +LLN K PT+D    D +++ P   PL   P+L EVEEAV ++ N KAVG D++  EL+KL L     +L+ FH  VV VWQ   VP
Sbjct:  262 DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPK-GGVQHTFQSSN-KGKEKYRLDLILMRQTDRRFVRNVSVKCVDFKDPDHNLVLTTVRRPPRVAPHRRVRGNSESSWIRIDLERLRKDKHQRVAFQNRVSSRPPPTALRR---PTGETAAELTATVMLAAAETAP--------------------LASAFEA---------------TLKAMLKTARK--KRSSALQ-ETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHEADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHATVVDVWQTGDVP 608          
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Match: A0A6H5KEC1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC1_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.090e-45
Identity = 132/394 (33.50%), Postives = 192/394 (48.73%), Query Frame = 1
Query:    1 DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITV-HPKMK-SDHRLVSASIRLLGRNASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIPDVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVRERVWDKLRAHPQDPSLRKALKVTNKAFKRAKHVE----LHSFLREHTATTADLTRQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAVGVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP 1164
            D +++G YGRD +N+NG RLL  A++++L + NT+  TPK GG   AF     K    +RLD+I +RQ DRR VRN++V     K SDH LV  ++R     A   +     G+  +  D  L     R   T  +                     A+   A +   A +  P        RG+     AQ  +  A    +    +LR   ++ +    LK   KA ++ + +     L  F   +       +R+ DQAG ++H+K+L++EGKR   S  IK+  G +LRD   I  RW  WF +LLN K PT+D    D +++ P   PL   P+L EVEEAV ++ N KAVG D++  EL+KL L     +L+ FH IVV VWQ   VP
Sbjct:  337 DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYSRTPK-GGVQHAFQSSN-KGKENYRLDFIFMRQTDRRFVRNVSVTRVNFKDSDHNLVLTTVRFPPCVAPTRQERGNSGNSRIRID--LERTSSRPPPTALRR---------------PTGETAAELTATVMSAAAETAPLARCARGQRGWYTSE-AQHEISDASKEIKAAQQQLRGASKNSACEATLKAMLKAARKKRSIARWRALEKFFEGYVRQLEKKSREGDQAGFHRHMKMLDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVP 710          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191487.5297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8Z5_9PHAE1.390e-5636.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KC90_9PHAE2.290e-5636.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE2.710e-5636.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE1.810e-5535.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6T0_9PHAE2.430e-5335.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVN7_9PHAE1.540e-5234.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6H7_9PHAE1.990e-5032.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM98_9PHAE7.050e-4733.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JMB4_9PHAE8.760e-4732.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEC1_9PHAE1.090e-4533.50Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191487contigH-elongata_contig191487:16..1179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score89.0
Seed ortholog evalue5.4e-15
Seed eggNOG ortholog13735.ENSPSIP00000000104
KEGG koko:K04257
KEGG Pathwayko04740,map04740
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,487I3@7711,4962T@7742,4CKCN@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Hectar predicted targeting categoryother localisation
Exons1
Model size1164
Cds size1164
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.6374147-CDS-H-elongata_contig191487:15..11791622930093.6374147-CDS-H-elongata_contig191487:15..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191487 16..1179 +
1691679277.7671235-CDS-H-elongata_contig191487:15..11791691679277.7671235-CDS-H-elongata_contig191487:15..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191487 16..1179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191487.5297.1prot_H-elongata_contig191487.5297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191487 16..1179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191487.5297.1

>prot_H-elongata_contig191487.5297.1 ID=prot_H-elongata_contig191487.5297.1|Name=mRNA_H-elongata_contig191487.5297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=388bp
DVRVLGPYGRDTLNDNGSRLLACAAEHKLLIVNTFFSTPKRGGNSDAFTY
EGPKESHRWRLDYILVRQHDRRLVRNITVHPKMKSDHRLVSASIRLLGRN
ASNHRLGPEEGHHGVPFDRNLLTADQRWRATVAQEVFNKLPDSTFASGIP
DVNSMASTFAAILRQTAVDILPHRPKRLTTRGFSEFPRAQARLRQAWDVR
ERVWDKLRAHPQDPSLRKALKVTNKAFKRAKHVELHSFLREHTATTADLT
RQRDQAGLYQHIKLLELEGKRGCRSTYIKNASGMLLRDKPSILLRWKEWF
QELLNAKLPTLDASILDGIEQLPEHAPLVAEPTLEEVEEAVSKLENSKAV
GVDNVCGELLKLGLSEKSAILKCFHNIVVAVWQQEVVP
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mRNA from alignment at H-elongata_contig191487:16..1179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191487.5297.1 ID=mRNA_H-elongata_contig191487.5297.1|Name=mRNA_H-elongata_contig191487.5297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-elongata_contig191487:16..1179+ (Himanthalia elongata Himel1 dioecious)
GATGTTCGGGTTTTGGGACCATACGGCAGAGACACTCTCAATGACAACGG GTCGCGACTTCTAGCATGTGCTGCCGAGCACAAGCTGTTGATTGTCAACA CCTTTTTCAGTACGCCGAAGCGTGGGGGAAACTCGGATGCGTTCACATAC GAGGGGCCGAAGGAATCCCACCGCTGGCGCCTGGACTACATCCTGGTACG CCAGCATGACCGCAGGCTCGTCCGGAATATCACTGTCCACCCGAAGATGA AATCAGACCACCGCTTGGTTTCAGCTTCCATCCGCCTCCTAGGAAGGAAC GCATCCAACCACCGCCTGGGACCAGAAGAAGGGCACCACGGGGTACCCTT CGACCGGAACCTCCTGACGGCTGATCAGCGCTGGAGAGCGACTGTAGCAC AGGAAGTTTTCAACAAGCTTCCTGACTCCACCTTCGCCTCTGGTATCCCG GACGTCAACTCTATGGCCTCTACGTTCGCCGCCATCTTGCGCCAGACAGC CGTAGACATACTCCCTCACCGCCCAAAGCGCCTCACTACGAGAGGCTTTA GCGAGTTCCCACGAGCCCAAGCACGCCTCCGACAGGCATGGGACGTCAGA GAACGCGTGTGGGACAAACTGCGTGCTCACCCCCAGGACCCAAGTCTAAG GAAGGCGTTGAAAGTGACAAACAAGGCGTTCAAACGGGCTAAGCACGTGG AGCTACATAGCTTCCTGCGTGAGCACACCGCCACGACCGCGGACCTCACC CGCCAGAGGGACCAGGCAGGACTGTACCAGCACATCAAGTTGCTGGAGCT GGAAGGGAAGAGGGGATGTAGATCAACCTACATCAAGAACGCTTCTGGCA TGTTGTTGCGGGACAAGCCATCTATCCTACTTCGATGGAAAGAGTGGTTT CAGGAGCTCCTGAACGCGAAATTGCCGACTCTTGACGCCTCTATCCTCGA CGGCATTGAGCAGTTGCCAGAACACGCCCCGCTTGTGGCCGAGCCCACGT TGGAGGAAGTGGAGGAGGCAGTGAGCAAGCTGGAGAACAGCAAGGCTGTC GGCGTCGACAATGTCTGCGGTGAACTGCTGAAGCTCGGTCTCTCCGAGAA ATCCGCCATCCTGAAGTGTTTCCACAACATTGTTGTCGCCGTATGGCAGC AGGAGGTAGTGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig191487:16..1179+

>mRNA_H-elongata_contig191487.5297.1 ID=mRNA_H-elongata_contig191487.5297.1|Name=mRNA_H-elongata_contig191487.5297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2328bp|location=Sequence derived from alignment at H-elongata_contig191487:16..1179+ (Himanthalia elongata Himel1 dioecious)
GATGTTCGGGTTTTGGGACCATACGGCAGAGACACTCTCAATGACAACGG
GTCGCGACTTCTAGCATGTGCTGCCGAGCACAAGCTGTTGATTGTCAACA
CCTTTTTCAGTACGCCGAAGCGTGGGGGAAACTCGGATGCGTTCACATAC
GAGGGGCCGAAGGAATCCCACCGCTGGCGCCTGGACTACATCCTGGTACG
CCAGCATGACCGCAGGCTCGTCCGGAATATCACTGTCCACCCGAAGATGA
AATCAGACCACCGCTTGGTTTCAGCTTCCATCCGCCTCCTAGGAAGGAAC
GCATCCAACCACCGCCTGGGACCAGAAGAAGGGCACCACGGGGTACCCTT
CGACCGGAACCTCCTGACGGCTGATCAGCGCTGGAGAGCGACTGTAGCAC
AGGAAGTTTTCAACAAGCTTCCTGACTCCACCTTCGCCTCTGGTATCCCG
GACGTCAACTCTATGGCCTCTACGTTCGCCGCCATCTTGCGCCAGACAGC
CGTAGACATACTCCCTCACCGCCCAAAGCGCCTCACTACGAGAGGCTTTA
GCGAGTTCCCACGAGCCCAAGCACGCCTCCGACAGGCATGGGACGTCAGA
GAACGCGTGTGGGACAAACTGCGTGCTCACCCCCAGGACCCAAGTCTAAG
GAAGGCGTTGAAAGTGACAAACAAGGCGTTCAAACGGGCTAAGCACGTGG
AGCTACATAGCTTCCTGCGTGAGCACACCGCCACGACCGCGGACCTCACC
CGCCAGAGGGACCAGGCAGGACTGTACCAGCACATCAAGTTGCTGGAGCT
GGAAGGGAAGAGGGGATGTAGATCAACCTACATCAAGAACGCTTCTGGCA
TGTTGTTGCGGGACAAGCCATCTATCCTACTTCGATGGAAAGAGTGGTTT
CAGGAGCTCCTGAACGCGAAATTGCCGACTCTTGACGCCTCTATCCTCGA
CGGCATTGAGCAGTTGCCAGAACACGCCCCGCTTGTGGCCGAGCCCACGT
TGGAGGAAGTGGAGGAGGCAGTGAGCAAGCTGGAGAACAGCAAGGCTGTC
GGCGTCGACAATGTCTGCGGTGAACTGCTGAAGCTCGGTCTCTCCGAGAA
ATCCGCCATCCTGAAGTGTTTCCACAACATTGTTGTCGCCGTATGGCAGC
AGGAGGTAGTGCCAGATGTTCGGGTTTTGGGACCATACGGCAGAGACACT
CTCAATGACAACGGGTCGCGACTTCTAGCATGTGCTGCCGAGCACAAGCT
GTTGATTGTCAACACCTTTTTCAGTACGCCGAAGCGTGGGGGAAACTCGG
ATGCGTTCACATACGAGGGGCCGAAGGAATCCCACCGCTGGCGCCTGGAC
TACATCCTGGTACGCCAGCATGACCGCAGGCTCGTCCGGAATATCACTGT
CCACCCGAAGATGAAATCAGACCACCGCTTGGTTTCAGCTTCCATCCGCC
TCCTAGGAAGGAACGCATCCAACCACCGCCTGGGACCAGAAGAAGGGCAC
CACGGGGTACCCTTCGACCGGAACCTCCTGACGGCTGATCAGCGCTGGAG
AGCGACTGTAGCACAGGAAGTTTTCAACAAGCTTCCTGACTCCACCTTCG
CCTCTGGTATCCCGGACGTCAACTCTATGGCCTCTACGTTCGCCGCCATC
TTGCGCCAGACAGCCGTAGACATACTCCCTCACCGCCCAAAGCGCCTCAC
TACGAGAGGCTTTAGCGAGTTCCCACGAGCCCAAGCACGCCTCCGACAGG
CATGGGACGTCAGAGAACGCGTGTGGGACAAACTGCGTGCTCACCCCCAG
GACCCAAGTCTAAGGAAGGCGTTGAAAGTGACAAACAAGGCGTTCAAACG
GGCTAAGCACGTGGAGCTACATAGCTTCCTGCGTGAGCACACCGCCACGA
CCGCGGACCTCACCCGCCAGAGGGACCAGGCAGGACTGTACCAGCACATC
AAGTTGCTGGAGCTGGAAGGGAAGAGGGGATGTAGATCAACCTACATCAA
GAACGCTTCTGGCATGTTGTTGCGGGACAAGCCATCTATCCTACTTCGAT
GGAAAGAGTGGTTTCAGGAGCTCCTGAACGCGAAATTGCCGACTCTTGAC
GCCTCTATCCTCGACGGCATTGAGCAGTTGCCAGAACACGCCCCGCTTGT
GGCCGAGCCCACGTTGGAGGAAGTGGAGGAGGCAGTGAGCAAGCTGGAGA
ACAGCAAGGCTGTCGGCGTCGACAATGTCTGCGGTGAACTGCTGAAGCTC
GGTCTCTCCGAGAAATCCGCCATCCTGAAGTGTTTCCACAACATTGTTGT
CGCCGTATGGCAGCAGGAGGTAGTGCCA
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