mRNA_H-elongata_contig191373.5288.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191373.5288.1
Unique NamemRNA_H-elongata_contig191373.5288.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig191373.5288.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 65.9 bits (159), Expect = 1.930e-9
Identity = 48/162 (29.63%), Postives = 77/162 (47.53%), Query Frame = 1 
Query:    1 WRNLETHYRAKGTREIIRVSHEINGKIMEPGGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIISGLPTDYEMECRMLGNNPVGFNRAEIERVVGNQYNRLLRQQHNLKAMSASKGHI------TANRGKGGDR---RQHPKFNRKCFNCGKGGHDARDC 459
            W  L   Y        + ++  ++   ME G    K + + D L   L  LG+  + E R+ VI++S LPT+YE+ C ++  N   F   E++  +  +Y RL +++   +A+ A+          T   GKG      R++  F  KCFNCG+ GH  RDC
Sbjct:   84 WNTLRDFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEP-LDEARQLVILLSSLPTEYELICSIV-ENAKDFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKRDC 243
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BLAST of mRNA_H-elongata_contig191373.5288.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.870e-8
Identity = 48/170 (28.24%), Postives = 76/170 (44.71%), Query Frame = 1 
Query:    1 WRNLETHYRAKGTREIIRVSHEINGKIMEPGGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIISGLPTDYEMECRMLGNNPVGFNRAEIERVVGNQYNRLLRQQHNLKAMSASKGHITANRGK-----------GGDRRQHPKFNRKCFNCGKGGHDARDCMASEES 477
            W  L   Y        + ++  ++   ME G    K +   D L   L  LG+  + E R+ VI++S LPT+YE+   ++ N+       E++  +  +Y RL ++     A+ A     TAN GK           G   R++  F  KC+NC + GH  RDC +S  S
Sbjct:   84 WNTLRDFYNRMTRHNRVSMTRRLHEFKMEDGVTMAKHLDNFDELVVGLQTLGEP-LDEARQLVILLSSLPTEYELISSIVENSK-DVTLIEVKERLLKEYERLEKKDGTESALKA-----TANGGKFKNAKSFKGRKGNSARKNNAFKGKCYNCDQIGHMKRDCPSSNVS 246
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BLAST of mRNA_H-elongata_contig191373.5288.1 vs. uniprot
Match: A0A225UQ90_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQ90_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.060e-7
Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = 1 
Query:    1 WRNLETHYRAKGTREIIRVSHEINGKIMEPGGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIISGLPTDYEMECRMLGNNPVGFNRAEIERVVGNQYNRLLRQQHNLKAMSAS------------KGHITANRGKGGDRRQHPKFNRKCFNCGKGGHDARDCMASEESGATD 489
            W  L   Y        + ++H ++   ME G    + + +   L   L  LG+ S+ + R+ VI++S LPT++E+   +  NN       E++  +  +Y R  +++ + +A+ A+            KG    NR K  + R+   F  KCFNCG+ GH  RDC       + D
Sbjct:    4 WNTLLEFYNRTTMHNRVTMTHRLHEFKMEDGSTMARHLDKFVELFVGLQTLGE-SLDDSRQLVILLSSLPTEFELIASIEENNK-DVTLIEVKDKLIKEYERQQKKEISERALKATSFGGMSKSGKFGKGDKGYNR-KSNNGRRLVGFKGKCFNCGQAGHMKRDCPEKVSGNSND 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191373.5288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
H3H572_PHYRM1.930e-929.63Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A329SN38_9STRA4.870e-828.24Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A225UQ90_9STRA5.060e-726.29Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191373contigH-elongata_contig191373:164..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930092.786601-CDS-H-elongata_contig191373:163..6641622930092.786601-CDS-H-elongata_contig191373:163..664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191373 164..664 -
1691679277.4122674-CDS-H-elongata_contig191373:163..6641691679277.4122674-CDS-H-elongata_contig191373:163..664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191373 164..664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191373.5288.1prot_H-elongata_contig191373.5288.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191373 164..664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191373.5288.1

>prot_H-elongata_contig191373.5288.1 ID=prot_H-elongata_contig191373.5288.1|Name=mRNA_H-elongata_contig191373.5288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
WRNLETHYRAKGTREIIRVSHEINGKIMEPGGDPFKFMMEIDRLAADLNR
LGDKSVTELRKCVIIISGLPTDYEMECRMLGNNPVGFNRAEIERVVGNQY
NRLLRQQHNLKAMSASKGHITANRGKGGDRRQHPKFNRKCFNCGKGGHDA
RDCMASEESGATDNRKG
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mRNA from alignment at H-elongata_contig191373:164..664-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191373.5288.1 ID=mRNA_H-elongata_contig191373.5288.1|Name=mRNA_H-elongata_contig191373.5288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig191373:164..664- (Himanthalia elongata Himel1 dioecious)
TGGCGAAATCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGATAAT
TCGCGTGTCCCATGAAATTAACGGGAAAATAATGGAACCAGGTGGGGACC
CATTCAAATTTATGATGGAAATTGACAGGCTAGCAGCTGATCTCAACCGA
TTGGGGGACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCATATC
TGGCCTCCCTACGGACTACGAGATGGAGTGCCGCATGTTGGGAAATAACC
CTGTTGGTTTTAACAGGGCTGAGATTGAGCGTGTCGTAGGGAATCAGTAC
AACAGACTTCTCAGGCAACAACATAATTTGAAGGCTATGTCGGCATCGAA
GGGCCACATTACGGCGAATCGCGGAAAGGGGGGGGACAGAAGACAACACC
CCAAATTCAACCGAAAGTGTTTCAATTGCGGAAAAGGAGGACACGACGCT
CGGGACTGCATGGCGAGTGAGGAATCAGGGGCCACCGACAACAGGAAGGG
C
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Coding sequence (CDS) from alignment at H-elongata_contig191373:164..664-

>mRNA_H-elongata_contig191373.5288.1 ID=mRNA_H-elongata_contig191373.5288.1|Name=mRNA_H-elongata_contig191373.5288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig191373:164..664- (Himanthalia elongata Himel1 dioecious)
TGGCGAAATCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGATAAT
TCGCGTGTCCCATGAAATTAACGGGAAAATAATGGAACCAGGTGGGGACC
CATTCAAATTTATGATGGAAATTGACAGGCTAGCAGCTGATCTCAACCGA
TTGGGGGACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCATATC
TGGCCTCCCTACGGACTACGAGATGGAGTGCCGCATGTTGGGAAATAACC
CTGTTGGTTTTAACAGGGCTGAGATTGAGCGTGTCGTAGGGAATCAGTAC
AACAGACTTCTCAGGCAACAACATAATTTGAAGGCTATGTCGGCATCGAA
GGGCCACATTACGGCGAATCGCGGAAAGGGGGGGGACAGAAGACAACACC
CCAAATTCAACCGAAAGTGTTTCAATTGCGGAAAAGGAGGACACGACGCT
CGGGACTGCATGGCGAGTGAGGAATCAGGGGCCACCGACAACAGGAAGGG
CTGGCGAAATCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGATAA
TTCGCGTGTCCCATGAAATTAACGGGAAAATAATGGAACCAGGTGGGGAC
CCATTCAAATTTATGATGGAAATTGACAGGCTAGCAGCTGATCTCAACCG
ATTGGGGGACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCATAT
CTGGCCTCCCTACGGACTACGAGATGGAGTGCCGCATGTTGGGAAATAAC
CCTGTTGGTTTTAACAGGGCTGAGATTGAGCGTGTCGTAGGGAATCAGTA
CAACAGACTTCTCAGGCAACAACATAATTTGAAGGCTATGTCGGCATCGA
AGGGCCACATTACGGCGAATCGCGGAAAGGGGGGGGACAGAAGACAACAC
CCCAAATTCAACCGAAAGTGTTTCAATTGCGGAAAAGGAGGACACGACGC
TCGGGACTGCATGGCGAGTGAGGAATCAGGGGCCACCGACAACAGGAAGG
GC
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