mRNA_H-elongata_contig19129.5286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19129.5286.1
Unique NamemRNA_H-elongata_contig19129.5286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19129.5286.1 vs. uniprot
Match: D7FVB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB0_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 8.620e-5
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:  154 ASAQTLQVFDMSKFIRPGDWKCATCLIRNP 243
            ++A T   FDMSKF +PG+WKCA CL+RNP
Sbjct: 2309 STAPTAGGFDMSKFRKPGEWKCAACLVRNP 2338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19129.5286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVB0_ECTSI8.620e-563.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19129contigH-elongata_contig19129:1540..2338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930092.718354-CDS-H-elongata_contig19129:1540..17351622930092.718354-CDS-H-elongata_contig19129:1540..1735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19129 1541..1735 -
1691679277.3838933-CDS-H-elongata_contig19129:1540..17351691679277.3838933-CDS-H-elongata_contig19129:1540..1735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19129 1541..1735 -
1622930092.7352521-CDS-H-elongata_contig19129:2275..23381622930092.7352521-CDS-H-elongata_contig19129:2275..2338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19129 2276..2338 -
1691679277.3943958-CDS-H-elongata_contig19129:2275..23381691679277.3943958-CDS-H-elongata_contig19129:2275..2338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19129 2276..2338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19129.5286.1prot_H-elongata_contig19129.5286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19129 1541..2338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19129.5286.1

>prot_H-elongata_contig19129.5286.1 ID=prot_H-elongata_contig19129.5286.1|Name=mRNA_H-elongata_contig19129.5286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
CAEGRRDVSSAMTSDSERQAENNDSSNAGGGVSGSNGAPLLGTVNGPSST
PASAQTLQVFDMSKFIRPGDWKCATCLIRNPAGENW
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mRNA from alignment at H-elongata_contig19129:1540..2338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19129.5286.1 ID=mRNA_H-elongata_contig19129.5286.1|Name=mRNA_H-elongata_contig19129.5286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=799bp|location=Sequence derived from alignment at H-elongata_contig19129:1540..2338- (Himanthalia elongata Himel1 dioecious)
TGCGCAGAAGGCCGTCGCGACGTCTCCTCGGCTATGACCAGTGACAGCGA
GCGTCAGGCTGAGGTAGCTACCATTCTTTAAATTGATGCATTATTCGTGC
ACAGAGCTGCACTGAATTCTCCAATCAGCGGTGACGGCTACCTCTTGTTT
TCCCCAATTCGGCGTGTAGTCGTCACCTCAAATTTGTGCGGATCCTCCTG
ACTCCACATGCTGCAGGCCAGCATGGGAATTTAGAGAAAAACAACATACT
CGCTTGAGGAGGAATCGAAGGACCGACCCCAATCTGATGCAATTACCGAA
GGAAATCATTTGGTGGCCGTCACCAGACATTGGAGAGTTCAGCACAACTC
TGTTTTTGAAGTAAACAATGAAACATACCGCGGCGCACGTAGCATCCAAA
GTCGACAATCTTGCGAGCACAATCCTTCATGAGACCGCAAACGATGCCGC
TACTTGTCTATTGATGTGATTTTGTTCGAAAATATTCGATCGGATTGCGA
CCTGACGTTTCTCGATACCCTCTTCCCTCTGTTCTTATCACATTCCCTTC
TTTTGTACCCCCCTCCCCCCCCAATCCACATAATCTGGACACGAATTTAT
CAGAATAACGATTCCAGCAACGCAGGTGGAGGCGTTTCGGGCAGCAATGG
CGCCCCTCTGTTGGGAACGGTGAACGGCCCCTCTTCAACGCCCGCATCAG
CACAAACTTTACAAGTTTTCGACATGTCGAAGTTTATACGTCCAGGAGAC
TGGAAGTGTGCAACGTGTCTGATTCGGAACCCTGCAGGAGAAAACTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig19129:1540..2338-

>mRNA_H-elongata_contig19129.5286.1 ID=mRNA_H-elongata_contig19129.5286.1|Name=mRNA_H-elongata_contig19129.5286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig19129:1540..2338- (Himanthalia elongata Himel1 dioecious)
TGCGCAGAAGGCCGTCGCGACGTCTCCTCGGCTATGACCAGTGACAGCGA
GCGTCAGGCTGAGTGCGCAGAAGGCCGTCGCGACGTCTCCTCGGCTATGA
CCAGTGACAGCGAGCGTCAGGCTGAGAATAACGATTCCAGCAACGCAGGT
GGAGGCGTTTCGGGCAGCAATGGCGCCCCTCTGTTGGGAACGGTGAACGG
CCCCTCTTCAACGCCCGCATCAGCACAAACTTTACAAGTTTTCGACATGT
CGAAGTTTATACGTCCAGGAGACTGGAAGTGTGCAACGTGTCTGATTCGG
AACCCTGCAGGAGAAAACTGGAATAACGATTCCAGCAACGCAGGTGGAGG
CGTTTCGGGCAGCAATGGCGCCCCTCTGTTGGGAACGGTGAACGGCCCCT
CTTCAACGCCCGCATCAGCACAAACTTTACAAGTTTTCGACATGTCGAAG
TTTATACGTCCAGGAGACTGGAAGTGTGCAACGTGTCTGATTCGGAACCC
TGCAGGAGAAAACTGG
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