mRNA_H-elongata_contig191202.5284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191202.5284.1
Unique NamemRNA_H-elongata_contig191202.5284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: A0A6H5J6M6_9PHAE (SHQ1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.860e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   22 RLTLPHELRDDEDEG-CKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALMQ 180
            RLTLP+E+  ++D+G CKA+YDP+D++GTIT      IPGQHFPDLDLTT LMQ
Sbjct:   49 RLTLPYEVGGEDDDGSCKAVYDPSDENGTITV-----IPGQHFPDLDLTTTLMQ 97
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: A0A835YXH0_9STRA (SHQ1 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.000e-12
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   22 RLTLPHELRDDEDEGCKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALMQ 180
            +L LP  +R ++DE C+A+YDP  D GT+  +LPKA  GQHFPDLDLT+AL+Q
Sbjct:   51 KLRLPLPVRGEDDERCRAVYDPAADGGTVVLHLPKATAGQHFPDLDLTSALLQ 103
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: A0A6A3SJB0_9STRA (CS domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SJB0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.840e-12
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   22 RLTLPHELRDDEDEGCKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALMQ 180
            +L  PHE+ DDE    KA+YDPN D+GTI  +LPK  PGQHFPDLD+ T L+Q
Sbjct:   49 KLHFPHEVVDDE--LAKAVYDPNKDNGTIVVHLPKKEPGQHFPDLDMLTKLLQ 99
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: G4ZMP3_PHYSP (CS domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZMP3_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 1.160e-10
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   22 RLTLPHELRDDEDEGCKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALMQ 180
            +L  PHE+ DDE    KA+YDPN D+G I  +LPK   GQHFPDLD+ T L+Q
Sbjct:   49 KLHFPHEVVDDE--LAKAVYDPNKDNGMIVVHLPKKEAGQHFPDLDMLTKLLQ 99
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: A0A7S3HKC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKC7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-10
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 SIVPRPHRLTLPHELR-DDEDEGCKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALMQ 180
            S+  +P+ L L    +  +EDE CKA YDP  D+GT+ A LPK   G+HFPDLDLTT+L+Q
Sbjct:   39 SLYCKPYLLKLTFACQFKEEDEECKATYDPFSDNGTLIAYLPKLNHGEHFPDLDLTTSLLQ 99
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: K8Z8P6_NANGC (Shq1-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8P6_NANGC)

HSP 1 Score: 61.6 bits (148), Expect = 6.370e-10
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 SIVPRPHRLTLPHELRDDEDEG--CKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALMQ 180
            S+ P   +L  PH L+++EDE   C+A+YD N DHGT+T +L K  PG+ F DLDL T L+Q
Sbjct:   21 SLRPYLLKLQFPHALKNNEDEESHCRAVYDANLDHGTMTVHLTKEEPGRVFEDLDLKTTLLQ 82
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: A0A5D6XNA5_9STRA (CS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNA5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.170e-8
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   22 RLTLPHELRDDEDEGCKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALMQ 180
            +L  PHE+ DDE    KA+YDPN+++GTI  +L K  PG  FPDLDL T L+Q
Sbjct:   49 KLQFPHEVVDDE--LAKAVYDPNEENGTIVVHLLKKEPGLEFPDLDLLTKLLQ 99
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: A0A507FCL0_9FUNG (CS domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FCL0_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 1.570e-5
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   22 RLTLPHELRDDEDEGCKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALM 177
            RLT PHE+ ++  E  +  YD     G IT +LPKA+PGQHF DLDL + L+
Sbjct:   48 RLTFPHEVIENGKESAR--YDVG--KGEITVSLPKAVPGQHFEDLDLLSKLL 95
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BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Match: K5VDA6_PHACS (CS domain-containing protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5VDA6_PHACS)

HSP 1 Score: 48.1 bits (113), Expect = 7.500e-5
Identity = 27/58 (46.55%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:    4 IVPRPHRLTLPHELRDDEDEGCKALYDPNDDHGTITANLPKAIPGQHFPDLDLTTALM 177
            I P   RL  PH L+  ED+   A YDP    G +   L KA+PGQHF DLDL   L+
Sbjct:   42 ITPYYLRLNFPHALQ--EDDEASAQYDPGS--GFLDVILTKALPGQHFEDLDLLAKLL 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191202.5284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5J6M6_9PHAE2.860e-1364.81SHQ1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YXH0_9STRA1.000e-1258.49SHQ1 protein-domain-containing protein n=1 Tax=Tri... [more]
A0A6A3SJB0_9STRA8.840e-1260.38CS domain-containing protein n=5 Tax=Phytophthora ... [more]
G4ZMP3_PHYSP1.160e-1056.60CS domain-containing protein (Fragment) n=1 Tax=Ph... [more]
A0A7S3HKC7_9STRA1.370e-1052.46Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K8Z8P6_NANGC6.370e-1050.00Shq1-like protein n=1 Tax=Nannochloropsis gaditana... [more]
A0A5D6XNA5_9STRA1.170e-854.72CS domain-containing protein n=1 Tax=Pythium brass... [more]
A0A507FCL0_9FUNG1.570e-550.00CS domain-containing protein n=1 Tax=Chytriomyces ... [more]
K5VDA6_PHACS7.500e-546.55CS domain-containing protein n=1 Tax=Phanerochaete... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191202contigH-elongata_contig191202:485..1137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue5.8e-09
Seed eggNOG ortholog42099.EPrPV00000022649
Preferred nameSHQ1
KEGG rclassRC00097,RC00609
KEGG koko:K01966,ko:K08597,ko:K14546,ko:K14764
KEGG ReactionR01859
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,ko03008,map00280,map00630,map00640,map01100,map01120,map01130,map01200,map03008
KEGG ModuleM00373,M00741
GOsGO:0000462,GO:0000491,GO:0000493,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0033554,GO:0034455,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042594,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045934,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090071,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000232,GO:2000233,GO:2000234,GO:2001141
EggNOG free text desc.Dip2/Utp12 Family
EggNOG OGs1MBUR@121069,KOG3247@1,KOG3247@2759,KOG4547@1,KOG4547@2759
EC2.1.3.15,3.4.22.68,6.4.1.3
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03009,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930092.5577242-CDS-H-elongata_contig191202:484..5381622930092.5577242-CDS-H-elongata_contig191202:484..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191202 485..538 -
1691679277.3460915-CDS-H-elongata_contig191202:484..5381691679277.3460915-CDS-H-elongata_contig191202:484..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191202 485..538 -
1622930092.572851-CDS-H-elongata_contig191202:1011..11371622930092.572851-CDS-H-elongata_contig191202:1011..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191202 1012..1137 -
1691679277.3560824-CDS-H-elongata_contig191202:1011..11371691679277.3560824-CDS-H-elongata_contig191202:1011..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191202 1012..1137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191202.5284.1prot_H-elongata_contig191202.5284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191202 485..1137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191202.5284.1

>prot_H-elongata_contig191202.5284.1 ID=prot_H-elongata_contig191202.5284.1|Name=mRNA_H-elongata_contig191202.5284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
SIVPRPHRLTLPHELRDDEDEGCKALYDPNDDHGTITANLPKAIPGQHFP
DLDLTTALMQ
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mRNA from alignment at H-elongata_contig191202:485..1137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191202.5284.1 ID=mRNA_H-elongata_contig191202.5284.1|Name=mRNA_H-elongata_contig191202.5284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=653bp|location=Sequence derived from alignment at H-elongata_contig191202:485..1137- (Himanthalia elongata Himel1 dioecious)
TCAATCGTCCCACGCCCCCACAGGCTGACCCTCCCCCATGAGCTGCGCGA
CGACGAGGATGAGGGGTGCAAGGCTCTTTACGACCCTAACGATGATCACG
GGACCATTACCGCTAACTTGCCCAAGGTAAGTTCGGGCTAGGCGCTGCAC
TGCAGCAGCTTGTCATTATAGTAGCTCTAGGGGGATAGGGGGTGTATAAC
CCTGTCTCCCCCCCCCCCGTCTTGAGATAATTTCCAGAAAATATCAAGCC
GCGCTTGTTTCCTTTTACAATCGTACAGGCAGCGGCGATATCTCTTAGGA
TTCCTCCTGCGGCCGTGCGCGTGCTTTGTTTTTCAAGGCACGTCGTCTTC
TTCGCGGCTAGCTCGGCGCCCGCCTCCCTCTAGCGTTTTCATTCCGATGC
GTGTGTGGGAGGATGTTACCCTAGCTCTTAATCTCTTATATCTTTTCTCG
TCTTATATGGCGAGCTTATCTGAAAAAAAATGTTCGTCAACCTCTTTTTG
AGGGGGCATTTTAGTGCAGGGAACCGTAGAGGCATTTTCGGGTAAAGGGG
CCGCAGGATGCGATAAGCGACACGCTGCTGCTTTCTGCCCGCTTTCCAGG
CAATTCCTGGTCAGCACTTCCCCGACCTTGACCTTACGACCGCGCTCATG
CAG
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Coding sequence (CDS) from alignment at H-elongata_contig191202:485..1137-

>mRNA_H-elongata_contig191202.5284.1 ID=mRNA_H-elongata_contig191202.5284.1|Name=mRNA_H-elongata_contig191202.5284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig191202:485..1137- (Himanthalia elongata Himel1 dioecious)
TCAATCGTCCCACGCCCCCACAGGCTGACCCTCCCCCATGAGCTGCGCGA
CGACGAGGATGAGGGGTGCAAGGCTCTTTACGACCCTAACGATGATCACG
GGACCATTACCGCTAACTTGCCCAAGTCAATCGTCCCACGCCCCCACAGG
CTGACCCTCCCCCATGAGCTGCGCGACGACGAGGATGAGGGGTGCAAGGC
TCTTTACGACCCTAACGATGATCACGGGACCATTACCGCTAACTTGCCCA
AGGCAATTCCTGGTCAGCACTTCCCCGACCTTGACCTTACGACCGCGCTC
ATGCAGGCAATTCCTGGTCAGCACTTCCCCGACCTTGACCTTACGACCGC
GCTCATGCAG
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