mRNA_H-elongata_contig191193.5282.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191193.5282.1
Unique NamemRNA_H-elongata_contig191193.5282.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.050e-21
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   13 KAGESLNILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQRLI 195
            +A ESLNILQDLEPDFVVLYDPDAAFVR LEAYQA R+ +R PL VYFMLY +S+EEQR +
Sbjct:  864 QARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRTLDRPPLVVYFMLYEQSVEEQRYL 924
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.960e-21
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   13 KAGESLNILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQRLI 195
            +A ESLNILQDLEPDFVVLYDPDAAFVR LEAYQA R  +R PL VYFMLY +S+EEQR +
Sbjct:  773 QARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQRYL 833
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: A4S158_OSTLU (ERCC4 domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S158_OSTLU)

HSP 1 Score: 66.6 bits (161), Expect = 2.820e-11
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   28 LNILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQRLI 195
            LN+L  ++P FVV+YDPDA+F+R+LE YQATR     P+ VYF++Y  SLEEQ+ +
Sbjct:  619 LNLLNRIQPSFVVMYDPDASFIRELEVYQATRPDV--PVKVYFLVYDTSLEEQKYL 672
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: UPI001C8225D8 (uncharacterized protein n=1 Tax=Scheffersomyces spartinae TaxID=45513 RepID=UPI001C8225D8)

HSP 1 Score: 65.9 bits (159), Expect = 5.270e-11
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   10 DKAGESLNILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQR 189
            D+ G+SL  LQ LEP ++++Y+PD +F+R++EAYQA    E HP   YFM Y  S+EEQ+
Sbjct:  736 DRDGDSL--LQALEPSYIIMYEPDLSFIRRVEAYQAIN--EEHPAKTYFMYYGNSVEEQK 791
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: A0A067CU23_SAPPC (ERCC4 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU23_SAPPC)

HSP 1 Score: 64.7 bits (156), Expect = 1.340e-10
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 CRLDKAGESLNILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQ 186
            C   +A     +L DL+P+ VVLYDPD AF+R+LE Y A  + +  PL+VYFM+Y ES E+Q
Sbjct:  503 CTYAQAKRCATLLHDLQPEHVVLYDPDVAFIRELEVYHAHYADD--PLSVYFMVYDESAEQQ 562
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: A0A0P1BF91_9BASI (Histidine--tRNA ligase n=1 Tax=Ceraceosorus bombacis TaxID=401625 RepID=A0A0P1BF91_9BASI)

HSP 1 Score: 64.7 bits (156), Expect = 1.360e-10
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   31 NILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQRLI 195
            N+LQ+L+P FVVLYDP+ AFVR+LE Y+A  S   + + VYF++YAES+EEQR +
Sbjct: 1246 NMLQELKPRFVVLYDPNPAFVRRLECYRA--SPITNAVRVYFLMYAESVEEQRYL 1298
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: A0A7S0KJP7_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KJP7_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.840e-10
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   28 LNILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQRLI 195
            +N+L  ++P FVV+YDPDAAF+R+LE Y+A       PL VYFM+Y  SLEEQ+ +
Sbjct:  660 VNVLNHIQPSFVVMYDPDAAFIRELEVYKAQHPDA--PLKVYFMVYDTSLEEQKYL 713
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: A0A316VRW7_9BASI (ERCC4 domain-containing protein n=1 Tax=Ceraceosorus guamensis TaxID=1522189 RepID=A0A316VRW7_9BASI)

HSP 1 Score: 64.3 bits (155), Expect = 1.840e-10
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   31 NILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQRLI 195
            N+LQ+L+P F+VLYDP+ AFVR+LE Y+A  S   + + VYF++YAES+EEQR +
Sbjct:  780 NMLQELKPRFIVLYDPNPAFVRRLECYRA--SPIANAVRVYFLMYAESVEEQRYL 832
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BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: A0A316U2Q6_9BASI (ERCC4 domain-containing protein n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U2Q6_9BASI)

HSP 1 Score: 63.9 bits (154), Expect = 2.510e-10
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   34 ILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAVYFMLYAESLEEQRLI 195
            +LQ+L P F+++YDPDAAFVR++E Y++T +       VYF+LYAES+EEQR +
Sbjct:  725 VLQELRPRFIIMYDPDAAFVRRIEMYRSTTAGVNP--RVYFLLYAESIEEQRYL 776
[Close]
BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Match: W4GRV4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRV4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.640e-10
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    1 CRLDKAGESLNILQDLEPDFVVLYDPDAAFVRKLEAYQATRSR-----ERHPLAVYFMLYAESLEEQ 186
            C   +A +  N+L DL P  +VLYDPD  F+R+LE + A  S      ++HP+ VYFM+Y  S E+Q
Sbjct:  518 CTYAEADKLPNLLDDLHPSHIVLYDPDVGFIRQLEVFNACNSAHDSRGQQHPVQVYFMVYENSAEQQ 584
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191193.5282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA6_9PHAE1.050e-2177.05ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FH45_ECTSI1.960e-2177.05ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A4S158_OSTLU2.820e-1155.36ERCC4 domain-containing protein n=2 Tax=Ostreococc... [more]
UPI001C8225D85.270e-1150.00uncharacterized protein n=1 Tax=Scheffersomyces sp... [more]
A0A067CU23_SAPPC1.340e-1050.00ERCC4 domain-containing protein n=2 Tax=Saprolegni... [more]
A0A0P1BF91_9BASI1.360e-1058.18Histidine--tRNA ligase n=1 Tax=Ceraceosorus bombac... [more]
A0A7S0KJP7_9CHLO1.840e-1053.57Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A316VRW7_9BASI1.840e-1056.36ERCC4 domain-containing protein n=1 Tax=Ceraceosor... [more]
A0A316U2Q6_9BASI2.510e-1053.70ERCC4 domain-containing protein n=1 Tax=Pseudomicr... [more]
W4GRV4_9STRA4.640e-1043.28Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191193contigH-elongata_contig191193:248..442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue9.7e-18
Seed eggNOG ortholog2880.D7FH45
Preferred nameRAD1
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG0442@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930092.2069345-CDS-H-elongata_contig191193:247..4421622930092.2069345-CDS-H-elongata_contig191193:247..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191193 248..442 -
1691679277.1759613-CDS-H-elongata_contig191193:247..4421691679277.1759613-CDS-H-elongata_contig191193:247..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191193 248..442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191193.5282.1prot_H-elongata_contig191193.5282.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191193 248..442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191193.5282.1

>prot_H-elongata_contig191193.5282.1 ID=prot_H-elongata_contig191193.5282.1|Name=mRNA_H-elongata_contig191193.5282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
CRLDKAGESLNILQDLEPDFVVLYDPDAAFVRKLEAYQATRSRERHPLAV
YFMLYAESLEEQRLI
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mRNA from alignment at H-elongata_contig191193:248..442-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191193.5282.1 ID=mRNA_H-elongata_contig191193.5282.1|Name=mRNA_H-elongata_contig191193.5282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig191193:248..442- (Himanthalia elongata Himel1 dioecious)
TGTCGTCTCGATAAGGCCGGGGAGAGTCTCAATATTCTGCAGGACCTCGA
GCCCGACTTCGTGGTCCTCTACGACCCCGACGCGGCGTTCGTAAGGAAAC
TGGAGGCGTACCAGGCCACGAGGTCGCGGGAGCGCCATCCCCTCGCCGTG
TACTTCATGCTGTACGCGGAAAGCTTGGAGGAGCAAAGGTTGATA
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Coding sequence (CDS) from alignment at H-elongata_contig191193:248..442-

>mRNA_H-elongata_contig191193.5282.1 ID=mRNA_H-elongata_contig191193.5282.1|Name=mRNA_H-elongata_contig191193.5282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig191193:248..442- (Himanthalia elongata Himel1 dioecious)
TGTCGTCTCGATAAGGCCGGGGAGAGTCTCAATATTCTGCAGGACCTCGA
GCCCGACTTCGTGGTCCTCTACGACCCCGACGCGGCGTTCGTAAGGAAAC
TGGAGGCGTACCAGGCCACGAGGTCGCGGGAGCGCCATCCCCTCGCCGTG
TACTTCATGCTGTACGCGGAAAGCTTGGAGGAGCAAAGGTTGATATGTCG
TCTCGATAAGGCCGGGGAGAGTCTCAATATTCTGCAGGACCTCGAGCCCG
ACTTCGTGGTCCTCTACGACCCCGACGCGGCGTTCGTAAGGAAACTGGAG
GCGTACCAGGCCACGAGGTCGCGGGAGCGCCATCCCCTCGCCGTGTACTT
CATGCTGTACGCGGAAAGCTTGGAGGAGCAAAGGTTGATA
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