mRNA_H-elongata_contig19108.5280.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19108.5280.1
Unique NamemRNA_H-elongata_contig19108.5280.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: A0A6H5K3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H3_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 3.110e-95
Identity = 204/390 (52.31%), Postives = 232/390 (59.49%), Query Frame = 1
Query:  424 PVLAGVSSVVTNATRALLPFVPLIAEAPALAEHARRAWPWARAGWAWSRPFAFVGALHPLASNTNVALASA--WCRPAAGAAGKLRSIDAETSEHLDCSTGGSCVDSAAAALDRRAMIRSMAVRLVGFGGTALLASSVTHPKAVAMAATKEEGGEGLHSEYS---FAKEGSYDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPGGLFRSLECVPLSALN 1578
            PVL  + S   N TR LLP  P + E PALA HAR A PWAR+  A +   A   +  P A    + L+          G++   RS     S    C      VD A  +L RR  I    V    +   A   SS     A       + G  G+  + S     KE SYD FA+ YDDLDGGWAAS +G+E         ATGRVLEVGVGTGLNL HY RD VSAI+AVDLS GML++AS+RS+SLGM  L  L  MDVE L FPS  FDTVVDTFSLCVFS+PSAALREMARVCKP GRVLLLEN            KS+FGPLAAYQD TAS+LV  G AKGCFWNQDVEAL R AGL V  S+PAL GGLFR+LECVP   + 
Sbjct:  127 PVLQHLPSKAANVTRNLLPLAPFVVEVPALAAHARAARPWARS--AMTAAVAAAFSRRPFARGF-ICLSGGGXXXXXXXGSSTNDRSALDPNSRSPSCCRD---VDVATPSLTRRGAIEETLVSAARWWAVAAAGSSGAFADA-------DVGATGVGDQLSSKALTKE-SYDGFAEGYDDLDGGWAASAIGLEA-------SATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQASSRSESLGMKRLVNLSVMDVEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLEN-----------SKSNFGPLAAYQDFTASFLVNKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVPAKVMG 484          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: D8LQ21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ21_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 1.450e-94
Identity = 156/215 (72.56%), Postives = 172/215 (80.00%), Query Frame = 1
Query:  919 SYDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPGGLFRSLECVP 1563
            SYD FA+ YD+LDGGWAAS +G+EELR++LL  ATGRVLEVGVGTGLNL HY RD VS I+AVDLS GML++AS+RS+SLGM  L +L  MD E L FPS  FDTVVDTFSLCVFS+PSAALREMARVCKP GRVLLLEN            KSDFGPLAAYQDLTAS+LV  G AKGCFWNQDVEAL R AGL V  S+PAL GGLFR+LEC P
Sbjct:   39 SYDGFAEGYDNLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSGIEAVDLSPGMLSQASSRSESLGMERLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLEN-----------SKSDFGPLAAYQDLTASFLVNKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECAP 242          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: A0A836CG23_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG23_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.510e-63
Identity = 127/225 (56.44%), Postives = 145/225 (64.44%), Query Frame = 1
Query:  889 HSEYSFAKEGSYDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPGGLFRSLECVP 1563
            +S+ +FAK+ SYD FA +YD LDG   A  LGI++LR  +   A GRVLEV VGTGLNLP+Y RD VS IDAVDLS  ML +A  R    G+  +    +MDVE LKF  GTFDTVVDTF LCVF +P AALREM RVC   GRVLLLEN            KS+   L AYQDLTA  L     +KGC WNQDVEALAR AGL V  S      GLFR++EC P
Sbjct:   16 YSDKAFAKQ-SYDTFASSYDGLDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLEN-----------SKSEVPLLGAYQDLTAGALSRI--SKGCVWNQDVEALARSAGLTVVHSYKCA-AGLFRAVECTP 225          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: A0A061R1H8_9CHLO (Methyltransferase type 11 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R1H8_9CHLO)

HSP 1 Score: 189 bits (479), Expect = 1.370e-51
Identity = 109/215 (50.70%), Postives = 132/215 (61.40%), Query Frame = 1
Query:  919 SYDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPGGLFRSLECVP 1563
            +YD +A  YD+LD G AA  L + ELR  LL+RA+G VLEVGVGTG+NLP Y +  VS++  VDLS+GML+ A  R + +G  GL  L+Q DVE L F   +FD VVDTFSLCV+ +P  ALREMARV +P G VLLL +            +S F PLA YQD TA  +   GR  GC WNQDV  LA  AGL V      L GGL   +   P
Sbjct:   85 AYDRYASEYDELDDGMAADFLRLPELRRSLLRRASGNVLEVGVGTGINLPLYDKRKVSSVTGVDLSVGMLHEAEQRVRRIGSDGLVTLQQADVESLPFADSSFDAVVDTFSLCVYPDPLQALREMARVLRPGGSVLLLAHT-----------RSTFTPLAVYQDATAQVVRRMGR--GCEWNQDVGGLAASAGLEVVEQERHL-GGLISLVVAHP 285          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: A0A836BNX8_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNX8_9CHLO)

HSP 1 Score: 180 bits (457), Expect = 1.530e-48
Identity = 109/226 (48.23%), Postives = 142/226 (62.83%), Query Frame = 1
Query:  919 SYDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDS-------------------VSAIDAVDLSMGMLNRASARSK-SLGMAGLT-RLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPG 1533
            +YD +A +YD+LDGG AA  LG  +LR +LL +A GRVLEV VGTGLNLP+Y+ D                    VS+++AVDLS GML++A  R++ S  ++G +   RQ DV  L +   +FD+VVDTFSLCVF +P  AL+EMARV +P+GRVLLLE+            +SD   LAAYQD TA  +   G  KGC WNQDVE LA  AGLRV+++  +  G
Sbjct:   56 AYDRYAGSYDELDGGVAAEALGFPQLRQQLLAQARGRVLEVAVGTGLNLPYYSWDERSGAASGDEAAAAVAESRGVSSVEAVDLSPGMLDQARRRTQASPALSGRSISFRQADVTALPYGDDSFDSVVDTFSLCVFPDPGTALKEMARVVRPSGRVLLLEHT-----------RSDNPLLAAYQDATAGPVAALG--KGCVWNQDVEGLAAAAGLRVEAAERSAAG 268          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: A0A8J9WTP0_9CHLO (Probable ubiquinone/menaquinone biosynthesis C-methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WTP0_9CHLO)

HSP 1 Score: 176 bits (446), Expect = 1.330e-47
Identity = 106/233 (45.49%), Postives = 137/233 (58.80%), Query Frame = 1
Query:  877 GEGLHSEYSFAK-------EGSYDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPGGLFRSLE 1554
            G G++ E S  +       E +YD++A +YD LD   A   LG  ELR  L+  A G+VLE+ VGTGLNLP Y  D + ++ A+D+S GML +A  R++ L         Q DV  L F +  FD V+DTFSLCVF +P+AA+RE ARV +P G +LLLE++           +S F PLA YQDLTA  +   G  KGCFWNQDV  L   AGLRVQ    ++ GGL   LE
Sbjct:    5 GAGMNQEISSGRSIPAVRIEEAYDQYAGSYDVLDSSAATDALGFPELRRELIAEAHGKVLELAVGTGLNLPLYHPDQLESLSALDISAGMLQQARMRAQGLSSQLPVTFLQGDVAALPFEAAYFDCVLDTFSLCVFPDPAAAVREAARVLRPGGTLLLLEHQ-----------RSPFAPLAWYQDLTADAVAAMG--KGCFWNQDVAGLLNAAGLRVQRKKESI-GGLIVLLE 223          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: E1Z8H8_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8H8_CHLVA)

HSP 1 Score: 174 bits (442), Expect = 3.470e-47
Identity = 100/201 (49.75%), Postives = 129/201 (64.18%), Query Frame = 1
Query:  913 EGSYDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSG--TFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQ 1509
            E +YD +A  YD LDGG AA  LG   LR +LL+RA G VLE  +GTGLNLP Y   +++++ A+DLS GML RA  R++ LGMA   +L Q DVE L+   G   FDTVVDTFSLCVF +P AA+REMA   +P G +LLLE+            +S+FGPL  YQD+TA  ++ AG  KGC WN +V      AGL+++
Sbjct:    4 EKAYDRYAATYDLLDGGDAAEQLGFPALRQQLLRRAQGAVLETAIGTGLNLPFYDTAALASLTAIDLSSGMLARARQRAEQLGMADSVQLVQADVEHLQEALGGRAFDTVVDTFSLCVFPDPGAAIREMAACLRPGGVLLLLEH-----------SRSEFGPLGWYQDVTAPAVMAAG--KGCRWNDNVSQHVEAAGLKIK 191          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: A0A8J6CFI3_DIALT (Methyltransf_11 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFI3_DIALT)

HSP 1 Score: 173 bits (439), Expect = 1.910e-46
Identity = 99/204 (48.53%), Postives = 125/204 (61.27%), Query Frame = 1
Query:  922 YDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPG 1533
            YD +A  YD LDGG AAS LG +ELR     RA G VLEVG GTGLNLP Y    V ++ A+D S GML+ A AR+  LG+AG     + DV  L F  GTFD V+DTFSLCVF++P AA+ EM RV  P+G ++ +E+++   L            L AYQDLT   +    R+KGC WNQDV A+AR+AG R   +  +L G
Sbjct:   42 YDSYAPTYDALDGGLAASRLGFDELRRVACARAHGAVLEVGAGTGLNLPLYDWSRVRSLVALDASSGMLDVARARADGLGLAGKVTFARGDVAALPFDDGTFDVVLDTFSLCVFADPIAAMAEMRRVLAPSGTIIAVEHQRADGL------------LGAYQDLTEPLVTP--RSKGCVWNQDVRAIARRAGCREVEARDSLAG 231          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: I0YQ96_COCSC (UbiE/COQ5 methyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQ96_COCSC)

HSP 1 Score: 172 bits (436), Expect = 2.150e-46
Identity = 101/200 (50.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:  934 ADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPG 1533
            A +YD LD G AA  LG  ELR  L+++A G VLE+ VGTGLNLP Y    V A+ A+DLS GML +A  R K LG        Q DV  L F S TFD V+DTFSLCVF + +AALRE ARV KP G++LLLE++           +S   PLA YQD+TA  +   G  KGCFWNQDV  L   AGLR+ +   +L G
Sbjct:   14 AASYDALDSGAAAEALGFPELRRELIEQAHGSVLELAVGTGLNLPVYNPSHVKALTALDLSAGMLQQARKRVKGLGDPLPVTFVQGDVAALPFESATFDCVIDTFSLCVFPDAAAALREAARVVKPGGQLLLLEHQ-----------RSPIAPLAWYQDVTADAVAAMG--KGCFWNQDVAGLLSAAGLRIVTKKESLGG 200          
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Match: A0A7S0WEJ0_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WEJ0_9CHLO)

HSP 1 Score: 171 bits (433), Expect = 2.120e-45
Identity = 97/206 (47.09%), Postives = 125/206 (60.68%), Query Frame = 1
Query:  919 SYDEFADNYDDLDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAIDAVDLSMGMLNRASARSKSLGMAG-LTRLRQMDVEDLKFPSGTFDTVVDTFSLCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAAYQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPG 1533
            +YD +A  YDDLDGG AA  LG++ +R   L+ A+G VLE+ VGTGLNL  Y    ++   A+DLS GML +A  R+  L      +R  + D   L F   +FD VVDTFSLCV  N  AALRE+ RV +P+GR +L+E+            KSD GPL AYQDLT+  +     +KGC WNQDVE L R++GL+V S   AL G
Sbjct:   54 AYDGYASTYDDLDGGSAAKALGLDAMRGDALRGASGDVLELAVGTGLNLASYDMSKINTFTAIDLSPGMLAQAKVRADELNFRRESSRFIEADATALPFEDASFDVVVDTFSLCVIENSVAALREVRRVLRPSGRAVLIEH-----------SKSDVGPLGAYQDLTSKPVKSM--SKGCVWNQDVEGLLRESGLKVVSVQRALLG 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19108.5280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3H3_9PHAE3.110e-9552.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ21_ECTSI1.450e-9472.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CG23_9STRA1.510e-6356.44S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A061R1H8_9CHLO1.370e-5150.70Methyltransferase type 11 n=1 Tax=Tetraselmis sp. ... [more]
A0A836BNX8_9CHLO1.530e-4848.23Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A8J9WTP0_9CHLO1.330e-4745.49Probable ubiquinone/menaquinone biosynthesis C-met... [more]
E1Z8H8_CHLVA3.470e-4749.75Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A8J6CFI3_DIALT1.910e-4648.53Methyltransf_11 domain-containing protein n=1 Tax=... [more]
I0YQ96_COCSC2.150e-4650.50UbiE/COQ5 methyltransferase n=1 Tax=Coccomyxa sube... [more]
A0A7S0WEJ0_9CHLO2.120e-4547.09Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19108contigH-elongata_contig19108:3638..7130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.4
Seed ortholog evalue1.2e-78
Seed eggNOG ortholog2880.D8LQ21
KEGG koko:K17803
EggNOG free text desc.methyltransferase activity
EggNOG OGsCOG0500@1,KOG4300@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-15_001250.1
Exons5
Model size1870
Cds size1230
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.977698-UTR-H-elongata_contig19108:3637..39881622930091.977698-UTR-H-elongata_contig19108:3637..3988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19108 3638..3988 +
1691679277.0846314-UTR-H-elongata_contig19108:3637..39881691679277.0846314-UTR-H-elongata_contig19108:3637..3988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19108 3638..3988 +
1622930092.0917757-UTR-H-elongata_contig19108:6841..71301622930092.0917757-UTR-H-elongata_contig19108:6841..7130Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19108 6842..7130 +
1691679277.1437266-UTR-H-elongata_contig19108:6841..71301691679277.1437266-UTR-H-elongata_contig19108:6841..7130Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19108 6842..7130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.9974124-CDS-H-elongata_contig19108:3988..46271622930091.9974124-CDS-H-elongata_contig19108:3988..4627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 3989..4627 +
1691679277.0971498-CDS-H-elongata_contig19108:3988..46271691679277.0971498-CDS-H-elongata_contig19108:3988..4627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 3989..4627 +
1622930092.011631-CDS-H-elongata_contig19108:5230..53741622930092.011631-CDS-H-elongata_contig19108:5230..5374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 5231..5374 +
1691679277.105409-CDS-H-elongata_contig19108:5230..53741691679277.105409-CDS-H-elongata_contig19108:5230..5374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 5231..5374 +
1622930092.0306475-CDS-H-elongata_contig19108:5635..57731622930092.0306475-CDS-H-elongata_contig19108:5635..5773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 5636..5773 +
1691679277.1130984-CDS-H-elongata_contig19108:5635..57731691679277.1130984-CDS-H-elongata_contig19108:5635..5773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 5636..5773 +
1622930092.0590043-CDS-H-elongata_contig19108:6192..62931622930092.0590043-CDS-H-elongata_contig19108:6192..6293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 6193..6293 +
1691679277.122675-CDS-H-elongata_contig19108:6192..62931691679277.122675-CDS-H-elongata_contig19108:6192..6293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 6193..6293 +
1622930092.0790741-CDS-H-elongata_contig19108:6633..68411622930092.0790741-CDS-H-elongata_contig19108:6633..6841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 6634..6841 +
1691679277.1346626-CDS-H-elongata_contig19108:6633..68411691679277.1346626-CDS-H-elongata_contig19108:6633..6841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19108 6634..6841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19108.5280.1prot_H-elongata_contig19108.5280.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19108 3989..6841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19108.5280.1

>prot_H-elongata_contig19108.5280.1 ID=prot_H-elongata_contig19108.5280.1|Name=mRNA_H-elongata_contig19108.5280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=410bp
MIIVPTGGYEGCTNNSTCQPYRPPPVLAGVSSVVTNATRALLPFVPLIAE
APALAEHARRAWPWARAGWAWSRPFAFVGALHPLASNTNVALASAWCRPA
AGAAGKLRSIDAETSEHLDCSTGGSCVDSAAAALDRRAMIRSMAVRLVGF
GGTALLASSVTHPKAVAMAATKEEGGEGLHSEYSFAKEGSYDEFADNYDD
LDGGWAASVLGIEELRTRLLKRATGRVLEVGVGTGLNLPHYTRDSVSAID
AVDLSMGMLNRASARSKSLGMAGLTRLRQMDVEDLKFPSGTFDTVVDTFS
LCVFSNPSAALREMARVCKPTGRVLLLENRQGFQLAEKGFGKSDFGPLAA
YQDLTASYLVGAGRAKGCFWNQDVEALARQAGLRVQSSNPALPGGLFRSL
ECVPLSALN*
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mRNA from alignment at H-elongata_contig19108:3638..7130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19108.5280.1 ID=mRNA_H-elongata_contig19108.5280.1|Name=mRNA_H-elongata_contig19108.5280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3493bp|location=Sequence derived from alignment at H-elongata_contig19108:3638..7130+ (Himanthalia elongata Himel1 dioecious)
TGCGTCGAGAGTTAAACGGGTACTCTGTTCCAGTCACTGGACTTGGTGCT AGAGGAGTTACCGACAGGCGTTTGACTATTAATGCCAGGAACACCACCAA ACACCGATTGACTATTAATGCCAGTAACTGCATTCACGTGCTCTACGAGT AAGAGCAGTTCAAAGCAGCGGCGGCGACAGCTGAGGCAGATAATCCTATC CTATCTTCATACATCCAGCTGGGCCGCTTTCCACCGTTAACCCACCGTCA GAGGAATAACGCCAACCACAGCACCGCATGGAAGAGTGGAATGTTCGGAG CCATCGTCCTCACCCAGGGAACGGCATCAGCGGCAGAAACCCAGGAAGGG GATGATAATCGTTCCAACGGGCGGATACGAAGGCTGTACCAACAATAGCA CGTGCCAACCCTATCGCCCACCACCTGTTTTGGCGGGGGTATCTTCCGTC GTCACGAACGCCACGCGAGCCTTGTTGCCGTTCGTCCCCTTGATCGCGGA AGCGCCGGCCCTTGCGGAGCATGCTAGGCGCGCCTGGCCCTGGGCACGCG CAGGGTGGGCGTGGTCGAGGCCCTTCGCGTTTGTCGGCGCCCTGCACCCA CTGGCCAGTAACACCAATGTTGCCTTGGCGAGTGCTTGGTGTCGACCCGC AGCAGGAGCAGCAGGAAAATTGAGAAGTATCGATGCTGAGACCAGCGAGC ACCTTGACTGTTCGACGGGAGGGTCTTGCGTCGATAGTGCAGCTGCTGCG CTTGACCGACGGGCGATGATCCGAAGTATGGCGGTACGCCTCGTGGGGTT TGGGGGCACGGCGCTGCTCGCTTCATCGGTTACACATCCAAAAGCAGTAG CGATGGCGGCGACAAAAGAGGAAGGGGGCGAAGGGTTACATTCCGAGTAT AGCTTTGCCAAAGAAGGATCGTACGACGAGTTCGCGGACAACTACGACGA TCTAGACGGGGGCTGGGCGGCGTCTGTTTTAGGGATTGAGGTGGGTAGTG TTGTGCGCTCATCGCACCGTGTGGGCAAAACAAAAACGAAAGTCACAGCA CTATTAGCTACCCTCCTAGTTTGTGGCGTTTCGTTGAGGCCGCGCTTCAT CTCGAACGAGACATCCACGAGACCGTGTAGCGTAATCAAAGGAGCTGGCC GAGGGCCTGCTGTGCCCGCTGTCATGGAAGCAAGTAATCCATCGTGAAGT TAGCTCATTGGCCAGACGACCGCCTTCCTTGTTGCAAAACCGCAAACTTT TCGAAGAAAACACCTTCAAAATCCGCAAATAAAAATCGCAGTTCCCCCTC CCCCCGTCGTGTCCTTCTATGACGATGTTCTTTTGCCCAACTTTGTGGAA GACTGTGTGTCCTCATAAATAACACTCGTGCTGATCCACGAGTCTTGTGT GCTACTTGCACCAAAGGAATGAGAGCGTCACTTCTGCGGTATGCCTCAGC CCGTGGGAAGGCGAAGACTCTTGACTATGACGACTCAGCGGATATATTTT CTTGAAGTTTTTCCTGCGCATCTTCTCGTTTCAATACCTTTCTAGGTGCG TAAGCTTCTCCTTCTTTTCTACCTTGCCGACATTTGTTCTCAGGAACTGC GAACTCGGCTGCTGAAACGGGCAACGGGTCGCGTACTCGAGGTCGGCGTG GGCACGGGTCTCAACTTGCCGCACTACACGCGGGACAGCGTGTCCGCTAT AGATGCGGTCGATCTCAGCATGGGCATGTTGAACCGGGTGCGTTATGCAC GCAGGGGAGCGTGTTCTCTCTATATTTTCCCAATACATATCTACAATAGC CGTGTCTTGTCTTGTGGTACATGCGAAAAGCAGCCTCAACCCCGCGACCG GTCCTCGAGTGTCGAATCTTGCAGAAGACCAAGGCGCACGACAACATAAT CTTGTTACGCACGATTTGGCAAAGATACATCGCCAGATAGCCCCAACACA TGAATGGTAACATCAATGATTGTATCACGATCGACGCTTGACTCACAGGC GTCGGCGAGAAGCAAGTCGCTGGGCATGGCGGGGCTGACGCGGCTGCGGC AGATGGACGTCGAGGATCTCAAGTTTCCATCGGGAACGTTCGACACGGTG GTGGACACGTTCTCTCTCTGCGTTTTCTCCAACCCGGTACTTAATCCCCT CCCTCCTCTAGCAACATGCCGCTGCCGTATGGTCCAAGTCCGTTTTAGGC CAGGGTGTCGACCTTGCGTTGGATTTACTTGCCGGTAACGACGGCTCAGT TTAAGGTGCTTCGTGTGTCTATGTATGTGGTGTATTAATATAAAATCTTG TCCTCTAGGCAGTCCTATCCTGCCCTCGCCAAGCCTGATAGTGATGCACT AGTGGCTAAAATCAATGAGCATAAATCAATCAACATCAAATAATAATTGT GTTTGTCAGTTCACTCAGCAAGTTAGATTAATGTTCTTTCAATACAGGCT CTCTTAAGGCCAAATCGACCACATACTGTCGTAAAACCCGTTCGTCAGTA CCTTTAGCGATTACATCCTATTTTCGGTGCACGCGGATGTCGGTGTACGC GTTAGTCCGCGGCGCTGCGGGAGATGGCGCGTGTTTGCAAGCCGACCGGG AGGGTTTTGCTTCTGGAAAACAGGCAAGGCTTCCAATTGGCGGAGAAAGG CTTTGGGTTGGAAGGGGGTTGCCGCAAAACACTCGCACTTATGAATACTC ATCTATCCCATTAAGCTCCGATTAGCAGGTACCGATTTGATCTATTGTTG TTATGGATAACAACAATATAGTGTATTGAGCATCAGCATCATTTGAGAGC GAACGCGGGATATTTAATGGATATTTATTCTCAGCAGTTTTTTTTAGGTA TTACTCCGACCGCCGGGAGCTAGGTTTTCTCCCCAGCACATGTTCCAATG AGGGGCACAACATACTGGTGGTAACGTCGGTTAACGATTGAGGGGAACCA CGTATCGGCGTCCTCTTTGTCCTCCTTTTTTCTTCTGGACTACCAGCAAG AGCGACTTCGGTCCCCTGGCCGCCTACCAAGACCTAACGGCCTCTTACCT TGTCGGCGCGGGGCGTGCCAAGGGTTGCTTCTGGAACCAAGACGTGGAGG CGTTGGCCAGGCAAGCGGGGTTGCGAGTACAGAGTTCTAACCCGGCGCTA CCGGGTGGCCTGTTTCGTTCGCTAGAGTGCGTGCCCCTGTCAGCTCTCAA CTAGGCAGTATACGTTGTTTTGATTTGTGCCGAACCTTGGGACGGCGGCG CGTGCTCCCTCGTCACGAAGTCCAAACGATGATATTATACGTCGCTCGAG GCTGTTTATCACGCAGGGGCGGAGCAGTCGAACGCGACCCTAAAGTTGAA ATGTGTCAGCAGTTTGTTTTGGCCAGATGAGTTTTGAAATGGATAGGAGT GACGGAGGTATTTCTTTCACTTTTGAGTGTTGGCTTGTTTCTCCGAATAT GGGCGGAGACACTAGATCTGTGAATTCTTCACTTGTGGCTCAT
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Coding sequence (CDS) from alignment at H-elongata_contig19108:3638..7130+

>mRNA_H-elongata_contig19108.5280.1 ID=mRNA_H-elongata_contig19108.5280.1|Name=mRNA_H-elongata_contig19108.5280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2460bp|location=Sequence derived from alignment at H-elongata_contig19108:3638..7130+ (Himanthalia elongata Himel1 dioecious)
ATGATAATCGTTCCAACGGGCGGATACGAAGGCTGTACCAACAATAGCAC
GTGCCAACCCTATCGCCCACCACCTGTTTTGGCGGGGGTATCTTCCGTCG
TCACGAACGCCACGCGAGCCTTGTTGCCGTTCGTCCCCTTGATCGCGGAA
GCGCCGGCCCTTGCGGAGCATGCTAGGCGCGCCTGGCCCTGGGCACGCGC
AGGGTGGGCGTGGTCGAGGCCCTTCGCGTTTGTCGGCGCCCTGCACCCAC
TGGCCAGTAACACCAATGTTGCCTTGGCGAGTGCTTGGTGTCGACCCGCA
GCAGGAGCAGCAGGAAAATTGAGAAGTATCGATGCTGAGACCAGCGAGCA
CCTTGACTGTTCGACGGGAGGGTCTTGCGTCGATAGTGCAGCTGCTGCGC
TTGACCGACGGGCGATGATCCGAAGTATGGCGGTACGCCTCGTGGGGTTT
GGGGGCACGGCGCTGCTCGCTTCATCGGTTACACATCCAAAAGCAGTAGC
GATGGCGGCGACAAAAGAGGAAGGGGGCGAAGGGTTACATTCCGAGTATA
GCTTTGCCAAAGAAGGATCGTACGACGAGTTCGCGGACAACTACGACGAT
CTAGACGGGGGCTGGGCGGCGTCTGTTTTAGGGATTGAGATGATAATCGT
TCCAACGGGCGGATACGAAGGCTGTACCAACAATAGCACGTGCCAACCCT
ATCGCCCACCACCTGTTTTGGCGGGGGTATCTTCCGTCGTCACGAACGCC
ACGCGAGCCTTGTTGCCGTTCGTCCCCTTGATCGCGGAAGCGCCGGCCCT
TGCGGAGCATGCTAGGCGCGCCTGGCCCTGGGCACGCGCAGGGTGGGCGT
GGTCGAGGCCCTTCGCGTTTGTCGGCGCCCTGCACCCACTGGCCAGTAAC
ACCAATGTTGCCTTGGCGAGTGCTTGGTGTCGACCCGCAGCAGGAGCAGC
AGGAAAATTGAGAAGTATCGATGCTGAGACCAGCGAGCACCTTGACTGTT
CGACGGGAGGGTCTTGCGTCGATAGTGCAGCTGCTGCGCTTGACCGACGG
GCGATGATCCGAAGTATGGCGGTACGCCTCGTGGGGTTTGGGGGCACGGC
GCTGCTCGCTTCATCGGTTACACATCCAAAAGCAGTAGCGATGGCGGCGA
CAAAAGAGGAAGGGGGCGAAGGGTTACATTCCGAGTATAGCTTTGCCAAA
GAAGGATCGTACGACGAGTTCGCGGACAACTACGACGATCTAGACGGGGG
CTGGGCGGCGTCTGTTTTAGGGATTGAGGAACTGCGAACTCGGCTGCTGA
AACGGGCAACGGGTCGCGTACTCGAGGTCGGCGTGGGCACGGGTCTCAAC
TTGCCGCACTACACGCGGGACAGCGTGTCCGCTATAGATGCGGTCGATCT
CAGCATGGGCATGTTGAACCGGGAACTGCGAACTCGGCTGCTGAAACGGG
CAACGGGTCGCGTACTCGAGGTCGGCGTGGGCACGGGTCTCAACTTGCCG
CACTACACGCGGGACAGCGTGTCCGCTATAGATGCGGTCGATCTCAGCAT
GGGCATGTTGAACCGGGCGTCGGCGAGAAGCAAGTCGCTGGGCATGGCGG
GGCTGACGCGGCTGCGGCAGATGGACGTCGAGGATCTCAAGTTTCCATCG
GGAACGTTCGACACGGTGGTGGACACGTTCTCTCTCTGCGTTTTCTCCAA
CCCGGCGTCGGCGAGAAGCAAGTCGCTGGGCATGGCGGGGCTGACGCGGC
TGCGGCAGATGGACGTCGAGGATCTCAAGTTTCCATCGGGAACGTTCGAC
ACGGTGGTGGACACGTTCTCTCTCTGCGTTTTCTCCAACCCGTCCGCGGC
GCTGCGGGAGATGGCGCGTGTTTGCAAGCCGACCGGGAGGGTTTTGCTTC
TGGAAAACAGGCAAGGCTTCCAATTGGCGGAGAAAGGCTTTGGTCCGCGG
CGCTGCGGGAGATGGCGCGTGTTTGCAAGCCGACCGGGAGGGTTTTGCTT
CTGGAAAACAGGCAAGGCTTCCAATTGGCGGAGAAAGGCTTTGGCAAGAG
CGACTTCGGTCCCCTGGCCGCCTACCAAGACCTAACGGCCTCTTACCTTG
TCGGCGCGGGGCGTGCCAAGGGTTGCTTCTGGAACCAAGACGTGGAGGCG
TTGGCCAGGCAAGCGGGGTTGCGAGTACAGAGTTCTAACCCGGCGCTACC
GGGTGGCCTGTTTCGTTCGCTAGAGTGCGTGCCCCTGTCAGCTCTCAACT
AGCAAGAGCGACTTCGGTCCCCTGGCCGCCTACCAAGACCTAACGGCCTC
TTACCTTGTCGGCGCGGGGCGTGCCAAGGGTTGCTTCTGGAACCAAGACG
TGGAGGCGTTGGCCAGGCAAGCGGGGTTGCGAGTACAGAGTTCTAACCCG
GCGCTACCGGGTGGCCTGTTTCGTTCGCTAGAGTGCGTGCCCCTGTCAGC
TCTCAACTAG
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