mRNA_H-elongata_contig190943.5277.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190943.5277.1
Unique NamemRNA_H-elongata_contig190943.5277.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig190943.5277.1 vs. uniprot
Match: A0A6H5JWV5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWV5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 7.030e-29
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 FFCTYQGVKYGAALFRQEEDIWNVIIASAGSFGPMIPFPAMRNRYPYAAVLIGMDTLNNHIL 186
            FFCTYQG+KYGA L R+E+D WNV+IASAGSF PM+  PAMR+RYPYAA+LI MDTLNNHIL
Sbjct:  108 FFCTYQGMKYGAKLARKEDDFWNVLIASAGSFAPMLVVPAMRSRYPYAAILIAMDTLNNHIL 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190943.5277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWV5_9PHAE7.030e-2977.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190943contigH-elongata_contig190943:887..1075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003320.1
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.7248905-CDS-H-elongata_contig190943:886..10751622930091.7248905-CDS-H-elongata_contig190943:886..1075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190943 887..1075 -
1691679277.0198498-CDS-H-elongata_contig190943:886..10751691679277.0198498-CDS-H-elongata_contig190943:886..1075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190943 887..1075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190943.5277.1prot_H-elongata_contig190943.5277.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190943 887..1075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190943.5277.1

>prot_H-elongata_contig190943.5277.1 ID=prot_H-elongata_contig190943.5277.1|Name=mRNA_H-elongata_contig190943.5277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
FFCTYQGVKYGAALFRQEEDIWNVIIASAGSFGPMIPFPAMRNRYPYAAV
LIGMDTLNNHIL*
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mRNA from alignment at H-elongata_contig190943:887..1075-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190943.5277.1 ID=mRNA_H-elongata_contig190943.5277.1|Name=mRNA_H-elongata_contig190943.5277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig190943:887..1075- (Himanthalia elongata Himel1 dioecious)
TTCTTCTGCACCTACCAGGGGGTCAAGTACGGCGCCGCGTTGTTCCGACA
AGAAGAAGACATCTGGAACGTGATAATCGCGTCCGCGGGATCTTTTGGGC
CCATGATACCATTCCCCGCCATGCGCAACCGCTACCCGTACGCAGCCGTC
CTTATCGGCATGGATACTCTGAACAACCATATATTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig190943:887..1075-

>mRNA_H-elongata_contig190943.5277.1 ID=mRNA_H-elongata_contig190943.5277.1|Name=mRNA_H-elongata_contig190943.5277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig190943:887..1075- (Himanthalia elongata Himel1 dioecious)
TTCTTCTGCACCTACCAGGGGGTCAAGTACGGCGCCGCGTTGTTCCGACA
AGAAGAAGACATCTGGAACGTGATAATCGCGTCCGCGGGATCTTTTGGGC
CCATGATACCATTCCCCGCCATGCGCAACCGCTACCCGTACGCAGCCGTC
CTTATCGGCATGGATACTCTGAACAACCATATATTGTAGTTCTTCTGCAC
CTACCAGGGGGTCAAGTACGGCGCCGCGTTGTTCCGACAAGAAGAAGACA
TCTGGAACGTGATAATCGCGTCCGCGGGATCTTTTGGGCCCATGATACCA
TTCCCCGCCATGCGCAACCGCTACCCGTACGCAGCCGTCCTTATCGGCAT
GGATACTCTGAACAACCATATATTGTAG
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