mRNA_H-elongata_contig19092.5276.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19092.5276.1
Unique NamemRNA_H-elongata_contig19092.5276.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19092.5276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19092contigH-elongata_contig19092:2213..4491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-19_001220.1
Hectar predicted targeting categoryother localisation
Exons4
Model size378
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19092.5276.1prot_H-elongata_contig19092.5276.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19092 2215..4491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.6001084-CDS-H-elongata_contig19092:2214..22651622930091.6001084-CDS-H-elongata_contig19092:2214..2265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19092 2215..2265 -
1691679276.9689367-CDS-H-elongata_contig19092:2214..22651691679276.9689367-CDS-H-elongata_contig19092:2214..2265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19092 2215..2265 -
1622930091.6249502-CDS-H-elongata_contig19092:3653..36911622930091.6249502-CDS-H-elongata_contig19092:3653..3691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19092 3654..3691 -
1691679276.9883368-CDS-H-elongata_contig19092:3653..36911691679276.9883368-CDS-H-elongata_contig19092:3653..3691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19092 3654..3691 -
1622930091.639267-CDS-H-elongata_contig19092:3928..40471622930091.639267-CDS-H-elongata_contig19092:3928..4047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19092 3929..4047 -
1691679277.001103-CDS-H-elongata_contig19092:3928..40471691679277.001103-CDS-H-elongata_contig19092:3928..4047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19092 3929..4047 -
1622930091.6555536-CDS-H-elongata_contig19092:4324..44911622930091.6555536-CDS-H-elongata_contig19092:4324..4491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19092 4325..4491 -
1691679277.0104995-CDS-H-elongata_contig19092:4324..44911691679277.0104995-CDS-H-elongata_contig19092:4324..4491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19092 4325..4491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19092.5276.1

>prot_H-elongata_contig19092.5276.1 ID=prot_H-elongata_contig19092.5276.1|Name=mRNA_H-elongata_contig19092.5276.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
FPIALTIPAVVLPEVKTYVPRGTFSQYDVSPPLTMSQNADDRDCKPTTLL
VSPTQRGIQNHNNHCFLIAAVQVIRRMTILHEQLLRRDISAYRRKPTPLT
NALAKTVQTGKSIADSARGTMQYEN
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mRNA from alignment at H-elongata_contig19092:2213..4491-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19092.5276.1 ID=mRNA_H-elongata_contig19092.5276.1|Name=mRNA_H-elongata_contig19092.5276.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2279bp|location=Sequence derived from alignment at H-elongata_contig19092:2213..4491- (Himanthalia elongata Himel1 dioecious)
TTTCCTATTGCACTTACGATACCGGCAGTCGTTCTCCCTGAAGTAAAAAC
TTATGTTCCACGCGGAACGTTTTCTCAATATGATGTTTCCCCTCCTCTGA
CGATGTCGCAGAACGCCGATGATCGCGACTGCAAGCCCACGACGTTGTTG
GTATCCCCAACTCAAAGGTTTGTTTGCATTCAGATGATCTCCAGTGCTGT
ATAACAAACTCCAGATCGTATTTGTCCAGTATAATGTACCCACGAAACGA
AGATGCGTAGTGCGTTGTACTAGGTCTTATTCCTCCGTTATCCCCCCATC
CGCGACATATGCCCGCCGCAAAGGGTTACCACGAGTAATTCGCGATTCAT
ATGACGTCTATATATAGTCGAAACGTCAAGGACATGCTCCAGGAACAACT
ACTTATTGAAACTTTATGTCTGTATTTTTTGTCGATGTCTGCAGAGGAAT
CCAGAATCACAATAACCATTGCTTCTTGATCGCAGCGGTGCAAGTTATCA
GAAGGATGACAATCCTGCACGAACAGCTATTACGTCGTGACATCTCGGCA
TACCGGCGGAAACGTAAGACGATATACATTAATCCTATAGATGATAGGCA
GATCCACGTTTGCGGCGAAATTAGGAGTATCAACAGCAAACGTATCAATA
GGAGAAATACGATGTATTTTTTCAAGTAGATGCAACTCGGAGTTCCGATT
AGCTATCGAAAACCTATATGAAATACGTAATAATTAAATACCAAACTGAG
TTTCAAACACGGTTTTGCTGTTGTTTCTTTTGTTGTCGACTACCGGTCAG
CTACACCGCTGACGAATGCCTTGGCCAAAACAGTCCAGGTGAACGCTACG
GTTGAAATCGTCGCATGGTGATCGTATCTATTGCGTCGAAGAAGCATTAT
TAGTGCCGGTATTTAACCGTGAGCGAAAGGTCATGGTGCGAGATGTTCCA
GTTATTACCGTTGTAGGCTCTTTACCGTAAACTTGTTCGTTCCATCGGGT
ATCCCAACAAAAGACTTTGGAGTTCGCCCTCGACGCCAAAACAATACTAC
TACTGTGAAATCTAGGCAAAATGTTTGTAAGATGAAGCGTTTTGAACAGG
GAACCAAACTTCACCAAATACACTCACTCGTGGGTTGGTGATTTTTCCTA
TTTTTCCTATCTGATTGCTCCAGGCCATGCAAAACGAGCCTGGGACCAAT
CCGATGGCCCCACAAATGGAGTTGACGACTACGTTTTTTCGAATCTTCGG
AAGCATTGTGAGACGTCGTCCGTTGGCTATACCCCATTTACTTTATTCAA
GTGAAATGTAGTAAACTCGTTCGAAAAGTCAACAGAGTAGGAAATATGCC
GATTAGAGGTTGAAAATCCAGTATTTTGCCACGTAATGCGCCCGTGAGAA
CAAATAACATCCTCGAAGAAAAGCTCGTTCATAAACGAAGCAATAGCTAA
TGGAACAAAGCTACGCAAGGGGCTCCATACATTGTCTTCCTGCTAGGATT
TGGAATTCATCATTTAGCTAAGTAGCAACCGAACAATATGTATTGCATCA
GGCCACTGTTATAGGCTCCGGTTTTGGAGACTCTTGACAAATTTCTTACG
TGGAGCTACTGGCGACTCGTTCCCGTTGTATAATTTCATATTCTCCTCAG
TTCGAAGACGGGAAACGGGACGACATGTCTGGGGCCCTTGAGAACATCCT
CACATGTATGCACGATGAGACAGTCGATGGACGGGTGAGGAGATAGAATC
TACAGTCCTATGCATATCCAATAGATGATGTCCAACGAATAGCTTGCAGG
TTACCCCCACCCTATTCCTGGTTCCGCTTGTGGCAATATACTTGCTTTAG
GGGTGTCTACATATAACACAGTTTTAAAATTCAGAACGGCGGGTTTATTA
AACAACGGGAGCTTATTTCCTGCTCTTGTTCGGAATCCTACACGAATTTA
AGCTCACAACAGCTTAGACGAAAAGCCTTACTAGAATAAAAAATGTAACC
AATTTTCAACTTGAAATCTGCCCAGCGGTTCGAACGGACTTAAGAAAGAA
GATTTATAAGTGGGACATTTTTTCTGTCAAGATTAATATTCTCAACCGAT
CAATCGTCGTTGCGTTCTTCTTCGGAAAACTATCTCACCACTCCCACACA
CTTTCCAACAGCGTGCAATTTCTAACGAAAACGTACCTCCTCTGCTCGCC
AAATCCCCTAAATATTATCCGAGCAGACGGGCAAGTCCATCGCTGACTCG
GCGCGTGGTACAATGCAATACGAAAACAC
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Coding sequence (CDS) from alignment at H-elongata_contig19092:2213..4491-

>mRNA_H-elongata_contig19092.5276.1 ID=mRNA_H-elongata_contig19092.5276.1|Name=mRNA_H-elongata_contig19092.5276.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig19092:2213..4491- (Himanthalia elongata Himel1 dioecious)
TTTCCTATTGCACTTACGATACCGGCAGTCGTTCTCCCTGAAGTAAAAAC
TTATGTTCCACGCGGAACGTTTTCTCAATATGATGTTTCCCCTCCTCTGA
CGATGTCGCAGAACGCCGATGATCGCGACTGCAAGCCCACGACGTTGTTG
GTATCCCCAACTCAAAGTTTCCTATTGCACTTACGATACCGGCAGTCGTT
CTCCCTGAAGTAAAAACTTATGTTCCACGCGGAACGTTTTCTCAATATGA
TGTTTCCCCTCCTCTGACGATGTCGCAGAACGCCGATGATCGCGACTGCA
AGCCCACGACGTTGTTGGTATCCCCAACTCAAAGAGGAATCCAGAATCAC
AATAACCATTGCTTCTTGATCGCAGCGGTGCAAGTTATCAGAAGGATGAC
AATCCTGCACGAACAGCTATTACGTCGTGACATCTCGGCATACCGGCGGA
AACAGGAATCCAGAATCACAATAACCATTGCTTCTTGATCGCAGCGGTGC
AAGTTATCAGAAGGATGACAATCCTGCACGAACAGCTATTACGTCGTGAC
ATCTCGGCATACCGGCGGAAACCTACACCGCTGACGAATGCCTTGGCCAA
AACAGTCCAGCTACACCGCTGACGAATGCCTTGGCCAAAACAGTCCAGAC
GGGCAAGTCCATCGCTGACTCGGCGCGTGGTACAATGCAATACGAAAACA
CGGGCAAGTCCATCGCTGACTCGGCGCGTGGTACAATGCAATACGAAAAC
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