mRNA_H-elongata_contig190897.5275.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190897.5275.1
Unique NamemRNA_H-elongata_contig190897.5275.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.940e-40
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 1
Query:    1 AQIEDGHGTAQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFREIDAGALADSGEMMEMDEAVKG 267
            AQIEDGHG A+RVS SVRRLDDIQMRVQRALALVEDVINLRGCA+GVR AV+ GD  EAATYV RFREIDAGALADSGEM++MDEAV+G
Sbjct:  133 AQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRG 221          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A836CCD6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.890e-18
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 AQIEDGHGTAQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFREIDAGALADSGEMMEM 249
            AQI +GH TA+RVS +VR LD  + R   AL  V++ + LRGCA+GVR A+ RGD G A  +V RF ++DA AL+ S E+ EM
Sbjct:   84 AQISEGHATAERVSGAVRGLDARRARAAAALTRVDEAVELRGCAEGVRGAMARGDLGAAVHHVRRFHQLDAAALSGSAELAEM 166          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: I2CQF7_NANGC (Oligomeric golgi complex component (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQF7_NANGC)

HSP 1 Score: 70.1 bits (170), Expect = 8.990e-14
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   37 VSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFREIDAGALADSG 234
            +SSSVR LD+ QMRVQR LA+VED+INL+ CA+GV  A+E  D   A +YV +F  I+  +   SG
Sbjct:    1 MSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLGATSYVRQFHSIEGASAKASG 66          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A7S2WIB6_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIB6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-13
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    4 QIEDGHGTAQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFREIDAGALADSGEMMEMDEAVK 264
            QIE+    ++RVS ++RRLD  QM VQ ALALVED++NL+ CA GV  A++  D  +A  YV +F +ID+ A   S +   + +A K
Sbjct:   75 QIEESRVLSERVSRTIRRLDRAQMNVQHALALVEDIVNLKDCAQGVITALKEEDLRDATGYVRQFHDIDSVAARASADYDRIIQAEK 161          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.070e-13
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   28 AQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFREIDAGALADSG 234
            A+++SSSVR LD+ QMRVQR LA+VED+INL+ CA+GV  A+E  D  +A +YV +F  I+  +   SG
Sbjct:  157 AEKMSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLDATSYVRQFHSIEGASAKASG 225          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A0G4F532_VITBC (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F532_VITBC)

HSP 1 Score: 72.8 bits (177), Expect = 5.250e-13
Identity = 35/90 (38.89%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 AQIEDGHGTAQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFREI--------DAGALADSGEMME 246
            A ++  H T++++SS VRRLD ++ R++ AL LVED+++L+ CA+GV  A+ RGD+  AA +++++R +        DA AL DS  +++
Sbjct:   80 ATLQFVHETSEKLSSRVRRLDTVRSRIEAALQLVEDLLDLKNCAEGVESAMGRGDYETAAKHIAKYRSLAQQFRQGGDASALEDSSAVLQ 169          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A507DRY6_9FUNG (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DRY6_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 1.540e-8
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   28 AQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFREID 210
            A+R+S  VR+LD  Q RV+  + LVED+  L+ CADGV++A++ GDF  A  +VSRF   D
Sbjct:   86 AERISGKVRQLDLEQSRVKATMGLVEDIQELKKCADGVQKALDSGDFELAGHFVSRFLNYD 146          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A813A1L0_9DINO (COG4 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813A1L0_9DINO)

HSP 1 Score: 57.8 bits (138), Expect = 2.330e-8
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   22 GTAQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFR 201
            G A  +S  VR+LD +  RV  AL LV+D++ LR CAD V +A+   DF +AA +VSRFR
Sbjct:   56 GVADELSFRVRKLDVVCSRVSDALKLVDDLLELRECADQVMKAISSEDFEQAARFVSRFR 115          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A812XJP0_9DINO (Conserved oligomeric Golgi complex subunit 4 n=6 Tax=Symbiodinium TaxID=2949 RepID=A0A812XJP0_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 5.360e-8
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    7 IEDGHGTAQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFR 201
            ++   G A  +S  VR+LD +  RV  AL LV+D++ LR CAD V +A+   DF +AA +VSRFR
Sbjct:   65 LQQTSGVADELSFRVRKLDVVCSRVSDALKLVDDLLELRECADQVMKAISSEDFEQAARFVSRFR 129          
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Match: A0A1Q9DLP7_SYMMI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DLP7_SYMMI)

HSP 1 Score: 58.5 bits (140), Expect = 5.510e-8
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    7 IEDGHGTAQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREAVERGDFGEAATYVSRFR 201
            ++   G A  +S  VR+LD +  RV  AL LV+D++ LR CAD V +A+   DF +AA +VSRFR
Sbjct:  760 LQQTSGVADELSFRVRKLDVVCSRVSDALKLVDDLLELRECADQVMKAISSEDFEQAARFVSRFR 824          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190897.5275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE1.940e-4085.39Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A836CCD6_9STRA1.890e-1851.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I2CQF7_NANGC8.990e-1453.03Oligomeric golgi complex component (Fragment) n=1 ... [more]
A0A7S2WIB6_9STRA1.100e-1344.83Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A4D9D1B9_9STRA2.070e-1352.17Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A0G4F532_VITBC5.250e-1338.89Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A507DRY6_9FUNG1.540e-849.18Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A813A1L0_9DINO2.330e-850.00COG4 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A812XJP0_9DINO5.360e-846.15Conserved oligomeric Golgi complex subunit 4 n=6 T... [more]
A0A1Q9DLP7_SYMMI5.510e-846.15Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190897contigH-elongata_contig190897:85..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue3.5e-34
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.541505-CDS-H-elongata_contig190897:84..2191622930091.541505-CDS-H-elongata_contig190897:84..219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190897 85..219 -
1691679276.947826-CDS-H-elongata_contig190897:84..2191691679276.947826-CDS-H-elongata_contig190897:84..219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190897 85..219 -
1622930091.556891-CDS-H-elongata_contig190897:453..5881622930091.556891-CDS-H-elongata_contig190897:453..588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190897 454..588 -
1691679276.9594045-CDS-H-elongata_contig190897:453..5881691679276.9594045-CDS-H-elongata_contig190897:453..588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190897 454..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190897.5275.1prot_H-elongata_contig190897.5275.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190897 85..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190897.5275.1

>prot_H-elongata_contig190897.5275.1 ID=prot_H-elongata_contig190897.5275.1|Name=mRNA_H-elongata_contig190897.5275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
AQIEDGHGTAQRVSSSVRRLDDIQMRVQRALALVEDVINLRGCADGVREA
VERGDFGEAATYVSRFREIDAGALADSGEMMEMDEAVKG*
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mRNA from alignment at H-elongata_contig190897:85..588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190897.5275.1 ID=mRNA_H-elongata_contig190897.5275.1|Name=mRNA_H-elongata_contig190897.5275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=504bp|location=Sequence derived from alignment at H-elongata_contig190897:85..588- (Himanthalia elongata Himel1 dioecious)
GCACAAATCGAGGACGGCCACGGCACGGCGCAGCGCGTGAGCAGCTCCGT CCGTCGGCTGGATGACATCCAGATGCGAGTCCAGCGCGCACTGGCTTTGG TTGAGGATGTTATCAACCTTCGAGGCTGCGCCGATGTGAGTGAAAAGAGG AGACGGAAGGAAGAAATATTAAGGGTAGGGTGGTGTAGGGTAGAAGAGAA GCGCGATGGGGGGGGCAGGAGGCCTTTCGAGTCGACCAATCGCTGGATGG ATCATTTCGGTGTTTTGCCGTTCACGAAGCCGTGTTGATCCCTTATGCCT TATGCATACATTACACCCCTGGATCGGGTGGGGCGGGGGGGTTCCTCTGC GCGCGGCGTTTTCCATAAGGGAGTGCGTGAGGCCGTCGAGAGGGGTGACT TCGGGGAGGCAGCGACGTACGTCAGCCGTTTCCGGGAGATCGATGCGGGG GCCCTGGCGGACAGCGGCGAGATGATGGAAATGGACGAGGCCGTCAAGGG GTGA
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Coding sequence (CDS) from alignment at H-elongata_contig190897:85..588-

>mRNA_H-elongata_contig190897.5275.1 ID=mRNA_H-elongata_contig190897.5275.1|Name=mRNA_H-elongata_contig190897.5275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig190897:85..588- (Himanthalia elongata Himel1 dioecious)
GCACAAATCGAGGACGGCCACGGCACGGCGCAGCGCGTGAGCAGCTCCGT
CCGTCGGCTGGATGACATCCAGATGCGAGTCCAGCGCGCACTGGCTTTGG
TTGAGGATGTTATCAACCTTCGAGGCTGCGCCGATGCACAAATCGAGGAC
GGCCACGGCACGGCGCAGCGCGTGAGCAGCTCCGTCCGTCGGCTGGATGA
CATCCAGATGCGAGTCCAGCGCGCACTGGCTTTGGTTGAGGATGTTATCA
ACCTTCGAGGCTGCGCCGATGGAGTGCGTGAGGCCGTCGAGAGGGGTGAC
TTCGGGGAGGCAGCGACGTACGTCAGCCGTTTCCGGGAGATCGATGCGGG
GGCCCTGGCGGACAGCGGCGAGATGATGGAAATGGACGAGGCCGTCAAGG
GGTGAGGAGTGCGTGAGGCCGTCGAGAGGGGTGACTTCGGGGAGGCAGCG
ACGTACGTCAGCCGTTTCCGGGAGATCGATGCGGGGGCCCTGGCGGACAG
CGGCGAGATGATGGAAATGGACGAGGCCGTCAAGGGGTGA
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