mRNA_H-elongata_contig190802.5271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190802.5271.1
Unique NamemRNA_H-elongata_contig190802.5271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190802.5271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190802contigH-elongata_contig190802:514..1008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size496
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.2517514-CDS-H-elongata_contig190802:513..8191622930091.2517514-CDS-H-elongata_contig190802:513..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190802 514..819 +
1691679276.8624454-CDS-H-elongata_contig190802:513..8191691679276.8624454-CDS-H-elongata_contig190802:513..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190802 514..819 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.2750065-UTR-H-elongata_contig190802:819..10081622930091.2750065-UTR-H-elongata_contig190802:819..1008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig190802 820..1008 +
1691679276.8773284-UTR-H-elongata_contig190802:819..10081691679276.8773284-UTR-H-elongata_contig190802:819..1008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig190802 820..1008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190802.5271.1prot_H-elongata_contig190802.5271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190802 514..819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190802.5271.1

>prot_H-elongata_contig190802.5271.1 ID=prot_H-elongata_contig190802.5271.1|Name=mRNA_H-elongata_contig190802.5271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
EGRGKKGPRREGRWVFVLRYWPSVVDCRGRGKRGGRAIFHRPLPPPAPSF
PLGFARPAPPHLFTLFPQTISFCCKTRAPTIAPLVPHISLRNGRQWRCHG
G*
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mRNA from alignment at H-elongata_contig190802:514..1008+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190802.5271.1 ID=mRNA_H-elongata_contig190802.5271.1|Name=mRNA_H-elongata_contig190802.5271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig190802:514..1008+ (Himanthalia elongata Himel1 dioecious)
GAAGGCCGCGGAAAAAAAGGGCCACGTCGGGAGGGGCGGTGGGTGTTCGT
TTTGCGATATTGGCCCAGCGTGGTGGACTGTCGCGGTAGAGGTAAGAGAG
GCGGGCGCGCGATCTTTCATCGCCCTTTGCCGCCACCGGCTCCCTCCTTT
CCTCTCGGCTTTGCGCGCCCGGCCCCGCCCCATTTATTCACGCTATTTCC
CCAAACAATTAGTTTTTGTTGCAAAACACGAGCGCCAACCATCGCTCCGT
TGGTGCCGCATATTTCTTTACGAAATGGGAGGCAATGGCGTTGTCACGGC
GGCTAAATTCGTTTTCGGGAAAAATGCAGGTATCACCCAGCAAGGAACGA
ACCCTTCAGTTGATCTAATCAAAACATGCTTGCTCGCTCTCTTGGACAGG
CATCGCAGAGAGTCAGCTAGAGTCAGCGGCTTTACAAAAGTCCCCCACCG
TGCTTCGATCGGAACGATTTGGAAATGACGACGCCTACTTAATGC
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Coding sequence (CDS) from alignment at H-elongata_contig190802:514..1008+

>mRNA_H-elongata_contig190802.5271.1 ID=mRNA_H-elongata_contig190802.5271.1|Name=mRNA_H-elongata_contig190802.5271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig190802:514..1008+ (Himanthalia elongata Himel1 dioecious)
GAAGGCCGCGGAAAAAAAGGGCCACGTCGGGAGGGGCGGTGGGTGTTCGT
TTTGCGATATTGGCCCAGCGTGGTGGACTGTCGCGGTAGAGGTAAGAGAG
GCGGGCGCGCGATCTTTCATCGCCCTTTGCCGCCACCGGCTCCCTCCTTT
CCTCTCGGCTTTGCGCGCCCGGCCCCGCCCCATTTATTCACGCTATTTCC
CCAAACAATTAGTTTTTGTTGCAAAACACGAGCGCCAACCATCGCTCCGT
TGGTGCCGCATATTTCTTTACGAAATGGGAGGCAATGGCGTTGTCACGGC
GGCTAAGAAGGCCGCGGAAAAAAAGGGCCACGTCGGGAGGGGCGGTGGGT
GTTCGTTTTGCGATATTGGCCCAGCGTGGTGGACTGTCGCGGTAGAGGTA
AGAGAGGCGGGCGCGCGATCTTTCATCGCCCTTTGCCGCCACCGGCTCCC
TCCTTTCCTCTCGGCTTTGCGCGCCCGGCCCCGCCCCATTTATTCACGCT
ATTTCCCCAAACAATTAGTTTTTGTTGCAAAACACGAGCGCCAACCATCG
CTCCGTTGGTGCCGCATATTTCTTTACGAAATGGGAGGCAATGGCGTTGT
CACGGCGGCTAA
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