mRNA_H-elongata_contig190668.5267.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190668.5267.1
Unique NamemRNA_H-elongata_contig190668.5267.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: D7G0W5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W5_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 2.200e-39
Identity = 64/75 (85.33%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGE 237
            +V+ALVGPSGGGKSSCI+LLENLY+PSRGQV+LDGLPV++YDH WLHRN+SIVGQEPTL+ARSIRENI YGLEGE
Sbjct:    3 EVLALVGPSGGGKSSCISLLENLYQPSRGQVLLDGLPVHEYDHGWLHRNISIVGQEPTLYARSIRENIIYGLEGE 77
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BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: A0A0B1SHK6_OESDE (ABC transporter domain-containing protein (Fragment) n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1SHK6_OESDE)

HSP 1 Score: 111 bits (278), Expect = 2.180e-30
Identity = 47/77 (61.04%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGETS 243
            +VVALVGPSGGGKSSCIA+LE+ Y+P+ G+V+LDG+P+ +YDH++LH  +++VGQEP L+ARS+ ENI YG++  T+
Sbjct:   12 EVVALVGPSGGGKSSCIAMLEHFYEPTGGEVLLDGVPIREYDHKYLHTKVALVGQEPVLYARSVTENIGYGMDTYTN 88
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BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: UPI0001EFDF20 (putative ABC transporter, ATP-binding protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFDF20)

HSP 1 Score: 119 bits (298), Expect = 1.670e-29
Identity = 53/75 (70.67%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGE 237
            ++VALVGPSGGGKSSCIALLE+ Y+PS GQV+LDG+PV +YDH++ H+ +S+V QEP LFARSIRENI+YGLE +
Sbjct:  598 EMVALVGPSGGGKSSCIALLEHFYEPSSGQVLLDGVPVQEYDHKFFHKKVSLVSQEPVLFARSIRENISYGLEAD 672
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BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: A0A0V1HIK4_TRIPS (ATP-binding cassette sub-family B member 9 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1HIK4_TRIPS)

HSP 1 Score: 119 bits (298), Expect = 1.670e-29
Identity = 53/75 (70.67%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGE 237
            ++VALVGPSGGGKSSCIALLE+ Y+PS GQV+LDG+PV +YDH++ H+ +S+V QEP LFARSIRENI+YGLE +
Sbjct:  619 EMVALVGPSGGGKSSCIALLEHFYEPSSGQVLLDGVPVQEYDHKFFHKKVSLVSQEPVLFARSIRENISYGLEAD 693
[Close]
BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: A0A0V0XJ68_TRIPS (ATP-binding cassette sub-family B member 9 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V0XJ68_TRIPS)

HSP 1 Score: 119 bits (298), Expect = 1.680e-29
Identity = 53/75 (70.67%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGE 237
            ++VALVGPSGGGKSSCIALLE+ Y+PS GQV+LDG+PV +YDH++ H+ +S+V QEP LFARSIRENI+YGLE +
Sbjct:  702 EMVALVGPSGGGKSSCIALLEHFYEPSSGQVLLDGVPVQEYDHKFFHKKVSLVSQEPVLFARSIRENISYGLEAD 776
[Close]
BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: A0A0V0W276_9BILA (ATP-binding cassette sub-family B member 9 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V0W276_9BILA)

HSP 1 Score: 119 bits (298), Expect = 1.690e-29
Identity = 53/75 (70.67%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGE 237
            ++VALVGPSGGGKSSCIALLE+ Y+PS GQV+LDG+PV +YDH++ H+ +S+V QEP LFARSIRENI+YGLE +
Sbjct:  945 EMVALVGPSGGGKSSCIALLEHFYEPSSGQVLLDGVPVQEYDHKFFHKKVSLVSQEPVLFARSIRENISYGLEAD 1019
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BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: A0A0V1GTQ8_9BILA (ATP-binding cassette sub-family B member 9 n=4 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GTQ8_9BILA)

HSP 1 Score: 119 bits (298), Expect = 1.690e-29
Identity = 53/75 (70.67%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGE 237
            ++VALVGPSGGGKSSCIALLE+ Y+PS GQV+LDG+PV +YDH++ H+ +S+V QEP LFARSIRENI+YGLE +
Sbjct:  959 EMVALVGPSGGGKSSCIALLEHFYEPSSGQVLLDGVPVQEYDHKFFHKKVSLVSQEPVLFARSIRENISYGLEAD 1033
[Close]
BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: A0A0V1F5Z8_TRIPS (ATP-binding cassette sub-family B member 9 n=7 Tax=Trichinella TaxID=6333 RepID=A0A0V1F5Z8_TRIPS)

HSP 1 Score: 119 bits (298), Expect = 1.690e-29
Identity = 53/75 (70.67%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGE 237
            ++VALVGPSGGGKSSCIALLE+ Y+PS GQV+LDG+PV +YDH++ H+ +S+V QEP LFARSIRENI+YGLE +
Sbjct:  966 EMVALVGPSGGGKSSCIALLEHFYEPSSGQVLLDGVPVQEYDHKFFHKKVSLVSQEPVLFARSIRENISYGLEAD 1040
[Close]
BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: A0A158QAX4_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A158QAX4_ENTVE)

HSP 1 Score: 118 bits (296), Expect = 3.100e-29
Identity = 50/76 (65.79%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLEGET 240
            +VVALVGPSGGGKSSCIA+LE+ Y+P RGQV+LDG+P+++YDH++LH  +++VGQEP L++RS+RENI+YG+E  T
Sbjct:  555 EVVALVGPSGGGKSSCIAMLEHFYEPERGQVLLDGVPIHEYDHKFLHTQVALVGQEPVLYSRSVRENISYGVENVT 630
[Close]
BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Match: A0A3P6TE24_CYLGO (ABC transporter domain-containing protein n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6TE24_CYLGO)

HSP 1 Score: 111 bits (277), Expect = 4.040e-29
Identity = 47/73 (64.38%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:   13 QVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWLHRNMSIVGQEPTLFARSIRENITYGLE 231
            + VALVGPSG GKSSCIALLEN Y+P+ GQV++DG+P+ DY+H ++HR +++VGQEP LFARS+ ENI YG++
Sbjct:   12 ETVALVGPSGSGKSSCIALLENFYQPNAGQVLVDGVPLEDYEHHYIHRKIALVGQEPVLFARSVTENIRYGVD 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190668.5267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W5_ECTSI2.200e-3985.33ABC transporter domain-containing protein n=1 Tax=... [more]
A0A0B1SHK6_OESDE2.180e-3061.04ABC transporter domain-containing protein (Fragmen... [more]
UPI0001EFDF201.670e-2970.67putative ABC transporter, ATP-binding protein n=1 ... [more]
A0A0V1HIK4_TRIPS1.670e-2970.67ATP-binding cassette sub-family B member 9 n=3 Tax... [more]
A0A0V0XJ68_TRIPS1.680e-2970.67ATP-binding cassette sub-family B member 9 n=2 Tax... [more]
A0A0V0W276_9BILA1.690e-2970.67ATP-binding cassette sub-family B member 9 (Fragme... [more]
A0A0V1GTQ8_9BILA1.690e-2970.67ATP-binding cassette sub-family B member 9 n=4 Tax... [more]
A0A0V1F5Z8_TRIPS1.690e-2970.67ATP-binding cassette sub-family B member 9 n=7 Tax... [more]
A0A158QAX4_ENTVE3.100e-2965.79Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
A0A3P6TE24_CYLGO4.040e-2964.38ABC transporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190668contigH-elongata_contig190668:203..992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.3e-31
Seed eggNOG ortholog2880.D7G0W5
Preferred nameABCB9
KEGG koko:K02021,ko:K05653,ko:K05654,ko:K05656,ko:K05658
KEGG TC3.A.1.106,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.201,3.A.1.209,3.A.1.21
KEGG Pathwayko02010,ko04142,ko04145,ko04612,ko04976,ko05168,ko05206,ko05226,ko05340,map02010,map04142,map04145,map04612,map04976,map05168,map05206,map05226,map05340
GOsGO:0000166,GO:0000323,GO:0001910,GO:0001911,GO:0001912,GO:0001914,GO:0001916,GO:0002237,GO:0002376,GO:0002428,GO:0002474,GO:0002475,GO:0002476,GO:0002477,GO:0002478,GO:0002479,GO:0002481,GO:0002483,GO:0002484,GO:0002485,GO:0002488,GO:0002489,GO:0002577,GO:0002579,GO:0002583,GO:0002585,GO:0002589,GO:0002591,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0002703,GO:0002704,GO:0002705,GO:0002706,GO:0002707,GO:0002708,GO:0002709,GO:0002711,GO:0002715,GO:0002716,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0003823,GO:0003824,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005793,GO:0005815,GO:0005856,GO:0005886,GO:0006629,GO:0006810,GO:0006857,GO:0006906,GO:0006950,GO:0006952,GO:0006996,GO:0007034,GO:0007041,GO:0008144,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0015421,GO:0015433,GO:0015440,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019882,GO:0019883,GO:0019884,GO:0019885,GO:0022607,GO:0022804,GO:0022857,GO:0023029,GO:0030139,GO:0030176,GO:0030554,GO:0030659,GO:0030666,GO:0030670,GO:0031047,GO:0031090,GO:0031224,GO:0031227,GO:0031341,GO:0031342,GO:0031343,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033116,GO:0033218,GO:0033220,GO:0035194,GO:0035264,GO:0035639,GO:0035672,GO:0035673,GO:0036094,GO:0040007,GO:0040029,GO:0042175,GO:0042221,GO:0042269,GO:0042270,GO:0042277,GO:0042287,GO:0042288,GO:0042590,GO:0042605,GO:0042623,GO:0042626,GO:0042802,GO:0042803,GO:0042824,GO:0042825,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043190,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043492,GO:0043531,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044459,GO:0044464,GO:0045088,GO:0045335,GO:0045824,GO:0045953,GO:0046907,GO:0046967,GO:0046968,GO:0046977,GO:0046978,GO:0046979,GO:0046980,GO:0046982,GO:0046983,GO:0048002,GO:0048284,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0060255,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0098852,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904680,GO:1904949,GO:1990351,GO:1990668
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930090.8970068-CDS-H-elongata_contig190668:202..3041622930090.8970068-CDS-H-elongata_contig190668:202..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190668 203..304 +
1691679276.699935-CDS-H-elongata_contig190668:202..3041691679276.699935-CDS-H-elongata_contig190668:202..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190668 203..304 +
1622930090.9085925-CDS-H-elongata_contig190668:848..9921622930090.9085925-CDS-H-elongata_contig190668:848..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190668 849..992 +
1691679276.7158575-CDS-H-elongata_contig190668:848..9921691679276.7158575-CDS-H-elongata_contig190668:848..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190668 849..992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190668.5267.1prot_H-elongata_contig190668.5267.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190668 203..992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190668.5267.1

>prot_H-elongata_contig190668.5267.1 ID=prot_H-elongata_contig190668.5267.1|Name=mRNA_H-elongata_contig190668.5267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MVSRQVVALVGPSGGGKSSCIALLENLYKPSRGQVMLDGLPVNDYDHRWL
HRNMSIVGQEPTLFARSIRENITYGLEGETSV
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mRNA from alignment at H-elongata_contig190668:203..992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190668.5267.1 ID=mRNA_H-elongata_contig190668.5267.1|Name=mRNA_H-elongata_contig190668.5267.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=790bp|location=Sequence derived from alignment at H-elongata_contig190668:203..992+ (Himanthalia elongata Himel1 dioecious)
ATGGTATCGCGGCAGGTGGTGGCCCTCGTGGGACCATCCGGCGGTGGAAA
GAGCTCTTGCATCGCGCTCCTGGAGAATCTCTACAAGCCTTCCAGGGGCC
AAGTTAGTATTTTATTTTAATACCTTCTTACCATGATTTACACACGTTTG
GGTTCGTGTTACGCTTCCGTCGGCGGCGAAAACGGTCGCACACCTCATCA
CCTCTTCGTTTTTTCCGTTCAACTGCGATCGATCCGAATATGGTGCGGGT
TTCCATTCCGGGTGGCGGTAATGTACGCGGTACGATGATTCCCCCCCGTG
ACCATCCCTCGCTCGGAAGGATCCGGCGGAATCAAACATGAACGAAAGAC
CCTCGCACATCCCTGAAGAAGATTCTCTGCTTTGCCAACCTGCAGCTCGT
CTACGAAGCCTCCTAAAGGGGTGTTATGTCTTCTTCTATGGAAGAGGTTT
GGTCTTGCTGCAAAGGCTACCCAGTGACGTGTCTGGGCGATGTAGAAACG
TTGAGGACGGCTTGCCTCGAGTGGAGCAACGAATGCAAGCATCTGGTGTG
AAAAGCATGGTCGGGGCTCGATCATGATCATGCCTTCCAACATCCGGCGT
GAAGCTGACCCTACTCGTCTGTTACTGGTCTGGTGGTGCGGCTCAGGTGA
TGCTAGACGGCCTTCCGGTCAACGATTACGACCATCGCTGGCTACATCGA
AACATGTCCATCGTGGGGCAAGAGCCGACACTATTCGCAAGGAGCATAAG
GGAGAATATCACCTATGGTCTTGAAGGTGAGACGTCTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig190668:203..992+

>mRNA_H-elongata_contig190668.5267.1 ID=mRNA_H-elongata_contig190668.5267.1|Name=mRNA_H-elongata_contig190668.5267.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig190668:203..992+ (Himanthalia elongata Himel1 dioecious)
ATGGTATCGCGGCAGGTGGTGGCCCTCGTGGGACCATCCGGCGGTGGAAA
GAGCTCTTGCATCGCGCTCCTGGAGAATCTCTACAAGCCTTCCAGGGGCC
AAATGGTATCGCGGCAGGTGGTGGCCCTCGTGGGACCATCCGGCGGTGGA
AAGAGCTCTTGCATCGCGCTCCTGGAGAATCTCTACAAGCCTTCCAGGGG
CCAAGTGATGCTAGACGGCCTTCCGGTCAACGATTACGACCATCGCTGGC
TACATCGAAACATGTCCATCGTGGGGCAAGAGCCGACACTATTCGCAAGG
AGCATAAGGGAGAATATCACCTATGGTCTTGAAGGTGAGACGTCTGTGGT
GATGCTAGACGGCCTTCCGGTCAACGATTACGACCATCGCTGGCTACATC
GAAACATGTCCATCGTGGGGCAAGAGCCGACACTATTCGCAAGGAGCATA
AGGGAGAATATCACCTATGGTCTTGAAGGTGAGACGTCTGTG
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