mRNA_H-elongata_contig19065.5265.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LS86_ECTSI (PARP catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS86_ECTSI) HSP 1 Score: 374 bits (959), Expect = 5.260e-123 Identity = 187/302 (61.92%), Postives = 220/302 (72.85%), Query Frame = 2
Query: 2 RAAWVEEDTGHLFLYCGTRCAHAAGSPDFVGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVGQ---ALNYDEVVVFREEAALP 898
RAAWV+E TG + YCG+RCA G VG G CSLPGCV N ++P ++E GYCCE HRL ATQRSLGP EPFVDRTFRGGTTSA DF+LS+L HP Y S K+QF+Q W KP GVSV+RI K+++P+ +RR+ E V NV RRFHGTSCS +CTFFVDL+ GPCGES C VC+ICTHGFQL+DNVG TAR+T +LRYG GLYFSS+SGKANDYA SEK +RSG VRCMF++SV VG+AF T E L P P P + VG+ ALNY EVVV++EEAALP
Sbjct: 170 RAAWVDEGTGGVLDYCGSRCAGEVGMNYLVGVGVCSLPGCVNPNFVHPRDRQETGYCCEDHRLRATQRSLGPNPEPFVDRTFRGGTTSADDFQLSVLTNRHPEYLSRKQQFMQKWEKPLVGTGVSVLRIFKVQVPKDIRRRTETCMGQVGNVQRRFHGTSCSNVCTFFVDLRGGPCGESTCKVCNICTHGFQLRDNVGDTARRTNFDLRYGDGLYFSSVSGKANDYAELSEKTDRSGKKVRCMFLSSVTVGRAFITYEG-KLPPEQCP----PPGFDSVVGEKGPALNYPEVVVYKEEAALP 466
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LS87_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS87_ECTSI) HSP 1 Score: 291 bits (745), Expect = 4.270e-91 Identity = 149/297 (50.17%), Postives = 192/297 (64.65%), Query Frame = 2
Query: 8 AWVEEDTGHLFLYCGTRCAHAAGSPDFVGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVGQALNYDEVVVFREEAALP 898
AW+ G YC +RCA G C L GC + + + T + YC E HR+ Q++LG + +V+R F GTT TDF+L +L K HP+Y S+ +QF+ WVKPEPVGG+SV +IL +++P VRR+ + Y + V NV RRFHGTSCS C FFVDL+ PC + C VCSICTHGF L+ NVG TAR+T LRYG GLYFSS+SGKANDYA SEK + +G +RCMF+A+VA GKAF+T E+ L P S+ VGQ LNYDE+VV+++EAALP
Sbjct: 154 AWLANIEGPQ--YCSSRCAIDDGGQKAGSSRSCKLAGCSEVALYHHQTGNALDYCGEDHRVRNEQQTLGTNGDTYVERIFHRGTTGTTDFKLCVLSKAHPHYPSLIDQFVNKWVKPEPVGGISVEKILTVEVPADVRRKTKTYEKTVGNVRRRFHGTSCSTKCNFFVDLRGNPCSDKGCKVCSICTHGFTLQGNVGGTARRTNFGLRYGEGLYFSSVSGKANDYADFSEKTDSNGRRLRCMFVANVAAGKAFKTHET-SLQQNECPP-AGYDSVVGEVGQGLNYDELVVYKDEAALP 446
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LSB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB5_ECTSI) HSP 1 Score: 262 bits (669), Expect = 2.740e-80 Identity = 123/233 (52.79%), Postives = 167/233 (71.67%), Query Frame = 2
Query: 2 RAAWVEEDTGHLFLYCGTRCAHAAGSPDFVGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKL 700
R AW++ +G +CG+RCA+ G+ VG+ CSLPGC M++ T ++MGYCC+ HR+ A +R+L E VDRTFRGG + DF+LS+L K H Y+S+KEQFL + KP V G+SV RI K+++P VR++++ + N RRFHGTSCS C FF+DL+ GPCG +CNVCSICTHGF+L+ +VG TA++T +NLRYG GLYFSS+SGKANDYA++SEK+
Sbjct: 153 RPAWMDHRSGDQLAFCGSRCAYTCGAQHLVGQMKCSLPGCNDFTMLHDRTMDDMGYCCDYHRIKAEERNLTQNPEAHVDRTFRGGPSD--DFKLSVLTKSHQAYSSLKEQFLVKFQKP--VDGLSVERIFKVQVPGDVRQKHKVFEEATNNTRRRFHGTSCSDACRFFMDLRGGPCGRPDCNVCSICTHGFRLRGSVGRTAQRTNMNLRYGEGLYFSSVSGKANDYAAQSEKV 381
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: A0A6H5JPY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY9_9PHAE) HSP 1 Score: 252 bits (644), Expect = 3.460e-77 Identity = 119/233 (51.07%), Postives = 165/233 (70.82%), Query Frame = 2
Query: 2 RAAWVEEDTGHLFLYCGTRCAHAAGSPDFVGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKL 700
R AW++ +G +CG+RCA+ G+ FVG+ CSLPGC M++ T ++MGYC + HR+ A +R+L E VDRTFRGG + DF+LS+L K H ++S+KEQFL + KP + G+SV RI K+++P VR +++ + + N RRFHGTSCS C FF+DL+ GPCG +CNVCSICTHGF+L+ + G TA++T + LRYG GLYFSS+SGKANDYA++SEK+
Sbjct: 123 RPAWMDIRSGDQLAFCGSRCAYTCGAHHFVGQMKCSLPGCNDFTMLHDRTMDDMGYCRDYHRIKAEERNLTQNPEAHVDRTFRGGPSD--DFKLSVLTKSHQAHSSLKEQFLVKFQKP--IDGLSVERIFKVQVPGDVRHKHKVFEKATNNTRRRFHGTSCSDACRFFMDLRGGPCGRPDCNVCSICTHGFRLRGSAGRTAQRTNMKLRYGEGLYFSSVSGKANDYAAQSEKV 351
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LS88_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS88_ECTSI) HSP 1 Score: 234 bits (596), Expect = 5.960e-69 Identity = 126/270 (46.67%), Postives = 165/270 (61.11%), Query Frame = 2
Query: 104 CSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPV--SEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVG---QALNYDEVVVFREEAALP 898
C L C + + T E++GYC EGHRLL+ S G + SEP+V + GT F L L + HP S++ QF WVKP+P G+SV+RI ++++P VR +++ Y R V N+ RRFHGTSCS C F VD + PCG C++C+I GF+L +NVG TA NLRYG G+YFSS+SGKANDYA + K + G +RCMF+A+VA GKA+ T E L P P E VG Q LNYDE+VV++EEAALP
Sbjct: 179 CKLRYCSVGTLHHLQTGEDLGYCSEGHRLLSKPPSKGQLRSSEPYVHGVYSVGTPR---FNLCALDEAHPECPSLRSQFSTKWVKPQPAEGISVVRIFRVEVPAEVRDKHDKYARTVRNIRRRFHGTSCSDGCNFIVDPQRSPCGLRSCSLCNISMRGFKLDENVGRTALARNFNLRYGKGVYFSSVSGKANDYADLTAKTAKDGTKLRCMFVANVAAGKAYSTKEKA-LDDGKCP----PPGYESVVGEVGQGLNYDELVVYKEEAALP 440
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LKU8_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU8_ECTSI) HSP 1 Score: 220 bits (560), Expect = 2.570e-66 Identity = 113/231 (48.92%), Postives = 148/231 (64.07%), Query Frame = 2
Query: 221 SEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESV----PLTPANAPRLVTTPSLERWVGQALNYDEVVVFREEAALPN 901
++ V++TFRGGTT ATDF LS L K HP Y S+ QF+ W+KP G V+RIL++K+P+ + ++ Y++ NV RRFHGTSCS C FFVDLK PC CNVC+ICTHGF L+DNV TAR+ RYG GLYFSS+SGK+NDYA +SEK+ G VRCMF+A+V G A+ T + PA +V VG L +DE+V + +EAA+P+
Sbjct: 4 TQSHVEQTFRGGTTGATDFVLSALSKAHPQYPSLCHQFVSKWLKP---GVPRVLRILEVKVPDDIYQKTVCYKKAKGNVRRRFHGTSCSAQCNFFVDLKGNPCSSKACNVCNICTHGFVLRDNVRGTARRANYRRRYGEGLYFSSVSGKSNDYAQQSEKVGSDGKKVRCMFVANVTAGNAYLTQQGSLGQDMCPPAGYDSVVGE------VGSGLIHDELVAYEDEAAIPS 225
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LKU6_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU6_ECTSI) HSP 1 Score: 216 bits (550), Expect = 7.660e-64 Identity = 114/232 (49.14%), Postives = 146/232 (62.93%), Query Frame = 2
Query: 89 VGKGWCSLPGCVGINMINPGTKEEMGYCCEGHRL--LATQRSLGPVSEPFVDRTFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVS-VIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSE 775
+G C L GC +P T E YC GH+ +A + + V+ V + FRGGTT ATDF LS+L K H Y+S+ QF+ WVK GGV V RIL++K+P + + Y++ N+ RRFHGTSCS C FFVDLK PC CNVC+ICT+GF L+ NVG TA++T I LRYG GLYFSS+SGK+NDYA SEK+ G VRCMF+A+V G A+ T +
Sbjct: 21 MGASECKLKGCSKNVYRDPVTGLESDYCSRGHQAHAIALGQGMRTVTS-HVQQVFRGGTTGATDFMLSVLSKSHHQYSSLCHQFISKWVK----GGVPHVRRILEVKVPADIYGKYANYKKAKGNIRRRFHGTSCSAGCNFFVDLKGNPCSSRGCNVCNICTNGFMLQGNVGGTAKRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVGSDGKKVRCMFIANVTAGNAYLTQQ 247
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LS85_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS85_ECTSI) HSP 1 Score: 196 bits (497), Expect = 7.530e-55 Identity = 115/276 (41.67%), Postives = 158/276 (57.25%), Query Frame = 2
Query: 104 CSLPGCVGINMINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDR-----TFRGGTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEGPCGESECNVCSICTHGFQLKDNVGHTARQTGIN--LRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTP----SLERWVGQALNYDEVVVFREEAALP 898
C LPGC + GT + +C E HR+L QR+ P +P + TSA EL L + HP + S+ +QF W+ +P GV V+ ++KI++P VR ++E Y+ +V NV RRFHGT SRIC F+V C +C +C+IC GF+++DNVGH+ + L YG GLYFSS+SGKAND+++E+EKL G VRCM +A VA GKAF T+E P++ P S+ VG LNYDE+VV+ AALP
Sbjct: 84 CGLPGCQ-QKALPGGTWRSLRFCSEAHRILFVQRTPVPFGQPSAEPYTTQVVVARDNTSA--LELRFLDEGHPEHKSLADQFTSKWLHSKPKLGVEVLNVVKIEVPREVRERHEDYKTMVPNVRRRFHGTFSSRICRFYVG--GSMCLRPDCGLCNICMRGFKIEDNVGHSPARGKRRQWLMYGKGLYFSSVSGKANDFSAETEKLATDGTTVRCMLVADVAAGKAFVTTEKY------FPQMERPPLGYNSVVGEVGPHLNYDELVVYDPAAALP 348
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: A0A6H5JBF5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF5_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.640e-52 Identity = 100/210 (47.62%), Postives = 135/210 (64.29%), Query Frame = 2
Query: 284 SILMKLHPN---YASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRRVVTNVARRFHGTSCSRICTFFVDLKEG--PCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPSLERWVGQALNYDEVVVFREEAALP 898
S+L L N Y +++ F W+KP P GVS+ R+ I++ +R ++E Y+ + N+ +RFHGTSC+ C F VD + G PCG+S C+VC+IC GF+L NV TAR TG+ LRYG G+Y +S+SGKANDYAS S K + +RCMF+ASVAVG+AF+T + PAN S+ VGQ LN+DE VV+ EEAALP
Sbjct: 15 SVLQMLEENSREYTALRGLFNARWMKPRPAKGVSIERVYSIQVSREMREKHERYKGMFGNLCQRFHGTSCNEGCNFMVDPQGGQAPCGKSSCSVCNICKLGFKLGANVAGTARATGVPLRYGEGIYLTSVSGKANDYASRSAKKIGIASELRCMFVASVAVGRAFKTKST--RLPANQCPPPGYQSVVGEVGQGLNFDEFVVYNEEAALP 222
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI) HSP 1 Score: 186 bits (471), Expect = 6.840e-49 Identity = 109/222 (49.10%), Postives = 143/222 (64.41%), Query Frame = 2
Query: 254 GTTSATDFELSILMKLHPNYASVKEQFLQSWVKPEPVGGVSVIRILKIKLPESVRRQNEGYRR-VVTNVARRFHGTSCSRICTFFVDLK--EGPCGESECNVCSICTHGFQLKDNVGHTARQTGINLRYGHGLYFSSISGKANDYASESEKLNRSGNLVRCMFMASVAVGKAFRTSESVPLTPANAPRLVTTPS----LERWVGQALNYDEVVVFREEAALP 898
G++S+T L IL Y ++ + F W+KP+P GVS++RI I++P V ++E Y+R VV N+ +RFHGTSC+ C F VD + PCG S C+VC+IC GF+L NV TAR +GI LRYG G+YFSS+SGKANDYA S K G +RCMF+A+VA GKAF T +S + P+ PS + VG ALNYDEVVV++EEAALP
Sbjct: 456 GSSSST---LRILDDDDWEYEALCDLFKTRWLKPQPTNGVSIVRIFSIQVPLEVHDKHELYKRMVVVNLRQRFHGTSCNDGCNFMVDPQGATAPCGLSSCSVCNICMLGFKLGKNVARTARASGIPLRYGTGIYFSSVSGKANDYARLSAKTGSDGAELRCMFVANVAGGKAFSTKKS------HLPQSECPPSGCQSVVGEVGHALNYDEVVVYKEEAALP 668 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19065.5265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19065.5265.1 >prot_H-elongata_contig19065.5265.1 ID=prot_H-elongata_contig19065.5265.1|Name=mRNA_H-elongata_contig19065.5265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp MINPGTKEEMGYCCEGHRLLATQRSLGPVSEPFVDRTFRGGTTSATDFELback to top mRNA from alignment at H-elongata_contig19065:3726..6251- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19065.5265.1 ID=mRNA_H-elongata_contig19065.5265.1|Name=mRNA_H-elongata_contig19065.5265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2526bp|location=Sequence derived from alignment at H-elongata_contig19065:3726..6251- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19065:3726..6251- >mRNA_H-elongata_contig19065.5265.1 ID=mRNA_H-elongata_contig19065.5265.1|Name=mRNA_H-elongata_contig19065.5265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig19065:3726..6251- (Himanthalia elongata Himel1 dioecious)back to top |