mRNA_H-elongata_contig19064.5263.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: D8LTC5_ECTSI (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTC5_ECTSI) HSP 1 Score: 458 bits (1179), Expect = 5.040e-157 Identity = 258/408 (63.24%), Postives = 286/408 (70.10%), Query Frame = 1
Query: 1 EELLRVAHIHREVLRPGVLSQALLRIAKPLVQVAKQSAMEKVREDPRLLDIFMAASAPAAPTQDLVSEHLQYPRASRGIAMRTANDRPLLSGAQAADIVWACGLLRWLPGDGG----------RIEHLLELIARTAASPGGIDGWHVTNVVWALDRLG-------------GFATEVARGGS-------CGRY--------------------EALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRR--HTFYLFSGDCVRMTAGCQRDYQHCVKVAKEDVGPRISLVFKQSL 1068
E+LL VA+ HR LRPG+LSQALLR+AKPLVQV++Q+A E V DPRL +F+AAS+PAA E P A+ G LSG QAAD+VWACGLL+WLP D R+ L+ L+AR A+S GID HVTNV+WAL+RLG E ARG CG EA++ELR +V LPFRA+PSLFEGLRVEDFR EVAF RDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVM+PT FSPNVLRLRD LY+RTGVLYDGVLLNLYES SSAMRYHSDPDVGT+WTQDTSVVSVGDTRQF LR TLDHS R H FYL SGDCVRMT GCQRDYQHCVKVAKE+VG RISLVFKQS+
Sbjct: 52 EDLLGVAYSHRAALRPGLLSQALLRLAKPLVQVSRQTAREAVLADPRLQALFLAASSPAAADG---GETAAEPAAAGGTNQS-------LSGPQAADVVWACGLLQWLPADDXXXXXXXXXHRRLAQLVALVARAASSKVGIDDGHVTNVLWALERLGVSKSPAEKKRKRKACEAEAARGAETPIAAPGCGAKXXXXXXXXXXXXXXGVWEGDEAVEELRSRVENLPFRAIPSLFEGLRVEDFRDEVAFRRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMEPTSFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRQFALRRTLDHSPRGRHAFYLSSGDCVRMTDGCQRDYQHCVKVAKEEVGARISLVFKQSI 449
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A836CIU8_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU8_9STRA) HSP 1 Score: 227 bits (579), Expect = 4.280e-69 Identity = 131/275 (47.64%), Postives = 166/275 (60.36%), Query Frame = 1
Query: 283 AADIVWACGLLRWLPGDGGRIEHLLELIARTAASPGGIDGWHVTNVVWALDRLGGFATEVARGGSCGRYEALDELRE--KVAPLPF----RAVPSLFEGLRVEDFRKEVAFGRDEILLGGG---KVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKV----AKEDVGPRISLVFKQSL 1068
A D +WA GLL P +G L L+AR AA + ++ +VW+L R+G + EL+ + LPF R +P+ + VE +EV F RDEI LG G KVL ESRLTAWQS GL F+YSGK M P P +P V++LR+ L + TG LYDGVL+NLY + S MR+H DP G WT++T+VVSVG+TRQFV+R DH+ RH FY+ SGDCVRM CQRD+QHCVKV A GPR+S VFKQS+
Sbjct: 22 AVDALWALGLLGQPPSEGT----LKVLLARLAADASKLQPGQLSAIVWSLQRMG------------AEHLCPQELKRPLEALKLPFSVHQRLLPASWSN--VESIMQEVEFRRDEIRLGEGGVEKVLEESRLTAWQSCTGLSFSYSGKTMAPQPMTPTVIKLREALAEHTGQLYDGVLINLYMTPSVGMRFHQDPGQGEEWTEETAVVSVGETRQFVMRRVDDHADRHVFYVSSGDCVRMFGACQRDWQHCVKVEGGAAAAGGGPRVSFVFKQSM 278
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A6T6VXL3_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6VXL3_9EUKA) HSP 1 Score: 194 bits (494), Expect = 2.590e-55 Identity = 107/244 (43.85%), Postives = 143/244 (58.61%), Query Frame = 1
Query: 394 IDGWHVTNVVWALDRLGGFATEVARGGSCGRYEALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCV-------------------KVAKEDVGPRISLVFKQSL 1068
+DG +++N+VWA LG +A E+ + LPFR F L +E+ R+EV F DE+ LGG KV+ E R TAWQ+S +PF YSGK M P +P + +R+++Y+ TGV YD L+NLY SSS MR+HSDPD G +W+ +T+VVSVGDTR F+LRET H +RH FY+ SGD + M CQ YQH + K +K GPR+S+VFKQSL
Sbjct: 141 LDGVNLSNLVWACRILGIDPPALAL--------------ERESLLPFRLHLQAFPELDIEEIRREVQFKTDEVKLGG-KVIRERRETAWQTSSNVPFRYSGKEMAPAAMTPIIQMVRNKIYNLTGVYYDCALINLYPDSSSGMRFHSDPDQGGIWSHNTAVVSVGDTRLFILRETWKHEKRHHFYVRSGDVMEMVRDCQEKYQHAIRTEESHKFTREMAVETSEFKPSKYTYGPRVSIVFKQSL 369
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A7S3Z587_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z587_9EUKA) HSP 1 Score: 179 bits (454), Expect = 2.810e-51 Identity = 98/208 (47.12%), Postives = 123/208 (59.13%), Query Frame = 1
Query: 526 LPFRAVPSLFEGLRVEDFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAKEDV---------------------------GPRISLVFKQSL 1068
LPF +F+ L V+ EV F +++ L G K LSE R TAWQSS PF YSGKVM P+PF+P V +RD ++ TGV YD LLNLY +S MR+HSDPD G W+ +T+VVSVGDTR FV+RE DHS+RH FY+ SGD + M CQ+ YQH ++ + V GPRIS+VFKQSL
Sbjct: 1 LPFTLKMGVFDNLTVDSLLDEVDFKTEQVELQG-KKLSERRQTAWQSSTNKPFRYSGKVMSPSPFTPLVQEIRDRIFKLTGVPYDCALLNLYPDGTSGMRFHSDPDQGIHWSTNTAVVSVGDTRLFVMREMDDHSKRHQFYVTSGDVLIMHGDCQQRYQHSIRTEEPGVRAAGVALDGSSSSSSSRSKHQRWSAALGPRISIVFKQSL 207
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A8J5XM98_DIALT (Fe2OG dioxygenase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XM98_DIALT) HSP 1 Score: 172 bits (435), Expect = 1.020e-46 Identity = 135/371 (36.39%), Postives = 178/371 (47.98%), Query Frame = 1
Query: 4 ELLRVAHIHREVLRPGVLSQALLRIAKPLVQVAKQSAMEKVREDPRLLDIFMAASAPAAPTQDLVSEHLQYPRASRGIAMRTANDRPLLSGAQAADIVWACGLLRWLP--GDGGRIEHLLELIARTAASPGGIDGWHVTNVVWALDRLGGFATEVARGGSCGRYEALDE---LREKVAPLPFRAVPSL-----FEGLRVE---DFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPT-PFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAKE--DVGPRISLVFKQSL 1068
E++R H L P S ALLR A SA+++ R D AA A +A T LV+ R +A N + A + A LL W G + +L+ +A A +PG + T V WA +C + L + ++A LPFR + + +E L E R+E+ RD G +++ E+RLT WQS G+PF+YSGK M P P +RD L +G+ YD L+NLYE MRYH DPD GT+W+ DT V S G TR FVLR T DH+ H F L GD V M CQ +YQHCV+V ++ D GPRISLVFKQSL
Sbjct: 36 EIMRAVREHAGSLSPAAASFALLRAA---------SALKQPRHDAE-----RAAIAGSADTL-LVA---------RAVAQGVTN------ASTAVIALRALALLGWRADRSTGAKAACVLDKLAARACAPGELTIAEQTAVEWA---------------ACKLHLTLPTPPTVSAQLAALPFRVLSGVCVAVPYETLEAELRPHLRRELIALRDS---RGERLVPEARLTGWQSRAGVPFSYSGKSMAPNVPDGGQFAAVRDTLRALSGIEYDSCLVNLYEHGKVGMRYHQDPDQGTLWSTDTHVASFGCTRAFVLRRTADHALHHEFTLQHGDVVHMFGACQAEYQHCVRVERDEADAGPRISLVFKQSL 358
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A835WWM2_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WWM2_9CHLO) HSP 1 Score: 176 bits (447), Expect = 1.430e-46 Identity = 117/282 (41.49%), Postives = 149/282 (52.84%), Query Frame = 1
Query: 250 ANDRPLLSGAQAADIVWACGLLRWLPGDGGRIEHLLELIARTAASPGGIDGWHVTNVVWALDRLGGFATEVARGGSCGRYE---ALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFGRDEILL-GGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTP--FSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKV--AKEDVGPRISLVFKQSLR 1071
A P L+ A+ A + A L PG G A AA+P + ++VWA+ G Y+ + L ++A +PF VP GLR+EDF EV RD I L G K + ESRLT WQS G F YSGK M P P +P V ++RDEL TGV YD VL+N Y MRYH DP G VW+ +++VVS+GDTR F+ RE D+ R + + +GD VRM CQ QHCV+V A ED GPR+SLVFK+ LR
Sbjct: 335 AQGLPPLAAARLAQLTAAVDTLVCAPGHAG---------AAAAAAPV-LTQQQQADLVWAV----------------GHYDWGHCVAALAPRMA-VPFTVVPQFMPGLRLEDFMAEVRLNRDTIYLEDGSKAVEESRLTGWQSDIGATFKYSGKEMIPDPSGMTPAVRQVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSIGDTRTFIFREITDYDSRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAEDAGPRMSLVFKERLR 588
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A2K3DVE4_CHLRE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DVE4_CHLRE) HSP 1 Score: 174 bits (442), Expect = 1.190e-45 Identity = 107/254 (42.13%), Postives = 141/254 (55.51%), Query Frame = 1
Query: 343 IEHLLELIARTAAS------PGGIDGWHVTNVVWALDRLGGFATEVARGGSCGRYEALDELREKVAPLPFRAVPSLFEGLRVEDFRKEVAFGRDEILL-GGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTP--FSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKV--AKEDVGPRISLVFKQSLR 1071
++ L++ A A S P + H+ ++VWA+ G C + L +A +PF VP GL+++DF EV RD I L G K + ESRLT WQS G F YSGK M P P +P V ++RDEL TGV YD VL+N Y MRYH DP G VW+ +++VVS+GDTR F+ RE D++ R + + +GD VRM CQ QHCV+V A ED GPR+SLVFK+ LR
Sbjct: 387 VDQLVKATAAAATSSSQPQQPAPLSQQHLADLVWAVAHYD--------WGHC-----VGALAPAMA-VPFAVVPQFMPGLKLQDFMAEVRLNRDVIYLEDGSKAVEESRLTGWQSDIGATFKYSGKEMVPDPSGMTPAVRKVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSIGDTRTFIFREISDYNSRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAEDAGPRMSLVFKERLR 625
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A250WY46_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WY46_9CHLO) HSP 1 Score: 167 bits (422), Expect = 2.250e-45 Identity = 87/186 (46.77%), Postives = 116/186 (62.37%), Query Frame = 1
Query: 523 PLPFRAVPSLFEGLRVEDFRKEVAFGRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMKPT-PFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAKED-----VGPRISLVFKQ 1062
PLPF+ P L+++ F KEV +D I L G+ + E RLT WQS G F YSGK+M+P+ P SP + ++RD+L D TGV +D VL+N Y+ MR+HSDP G WT T+VVS+G R+FV RET + R + + +GD V M CQ QHC+KV +ED +GPR+SLVFKQ
Sbjct: 127 PLPFKFCPGYMRNLKLQSFLKEVQLQQDVIELHDGRRVEEPRLTGWQSDIGATFEYSGKIMRPSGPLSPEIRKVRDQLIDLTGVKFDSVLINYYKDGRCGMRFHSDPLYGC-WTSSTAVVSIGQARRFVFRETHNVQSRWEYTVKTGDVVFMFGDCQDRLQHCIKVEREDKGALEMGPRMSLVFKQ 311
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A835TLQ1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TLQ1_CHLIN) HSP 1 Score: 172 bits (437), Expect = 5.790e-44 Identity = 96/187 (51.34%), Postives = 115/187 (61.50%), Query Frame = 1
Query: 526 LPFRAVPSLFEGLRVEDFRKEVAFGRDEILL-GGGKVLSESRLTAWQSSDGLPFAYSGKVMKPTP--FSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRETLDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKV--AKEDVGPRISLVFKQSLR 1071
+PF VP GLR+EDF EVA RD I L G K + ESRLT WQS F YSGK M P P +P V ++RDEL TGV YD VL+N Y MRYH DP G VW+ +++VVSVGDTR F+ RE D+ R + + +GD VRM CQ QHCV+V A D GPR+SLVFK+ LR
Sbjct: 825 VPFAVVPQFMPGLRLEDFMAEVALNRDVIYLEDGSKAVEESRLTGWQSDIAATFKYSGKEMIPDPSGMTPAVRKVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSVGDTRTFIFREIADYDSRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAADAGPRMSLVFKERLR 1010
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Match: A0A7S0S918_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S918_9CHLO) HSP 1 Score: 155 bits (392), Expect = 1.160e-38 Identity = 75/165 (45.45%), Postives = 109/165 (66.06%), Query Frame = 1
Query: 586 EVAFGRDEILLGGGKVLSESRLTAWQSSDGLP-FAYSGKVMKPTPFSPNVLRLRDELYDRTGVLYDGVLLNLYESSSSAMRYHSDPDVGTVWTQDTSVVSVGDTRQFVLRET-LDHSRRHTFYLFSGDCVRMTAGCQRDYQHCVKVAK--EDVGPRISLVFKQSL 1068
EV F ++++ GK + E R T W + +G+ AYSGK+M+PTPF+P V R+RDELY+ TG +D LLNLY S++ +YH+DPD+G +W +D+ +VSVG+TR+F R + H F + SGDC+ M A C Y+HCV A+ E+ PR S+VFK+S+
Sbjct: 423 EVPFKAEQLVTRDGKRVDERRETCWMAEEGVGGLAYSGKIMRPTPFTPTVARIRDELYEETGERFDCALLNLYPDGSTSCKYHTDPDLGRLWARDSIIVSVGETRRFAFRRLGATDAEAHWFRVRSGDCIHMFADCNDSYEHCVMKAESEENDAPRASIVFKRSV 587 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19064.5263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19064.5263.1 >prot_H-elongata_contig19064.5263.1 ID=prot_H-elongata_contig19064.5263.1|Name=mRNA_H-elongata_contig19064.5263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp EELLRVAHIHREVLRPGVLSQALLRIAKPLVQVAKQSAMEKVREDPRLLDback to top mRNA from alignment at H-elongata_contig19064:1938..4824- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19064.5263.1 ID=mRNA_H-elongata_contig19064.5263.1|Name=mRNA_H-elongata_contig19064.5263.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2887bp|location=Sequence derived from alignment at H-elongata_contig19064:1938..4824- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19064:1938..4824- >mRNA_H-elongata_contig19064.5263.1 ID=mRNA_H-elongata_contig19064.5263.1|Name=mRNA_H-elongata_contig19064.5263.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2154bp|location=Sequence derived from alignment at H-elongata_contig19064:1938..4824- (Himanthalia elongata Himel1 dioecious)back to top |