mRNA_H-elongata_contig19056.5258.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: A0A6H5KR01_9PHAE (Protein arginine N-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR01_9PHAE) HSP 1 Score: 138 bits (348), Expect = 2.170e-36 Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1
Query: 1 ARKDQFDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQ 228
ARKD FDFVA+PLVHPRF RDALGVSS+REDPLTRSDFLLDSRQWSSLIVGKISEWLDMDS CE SA SELAFKQ
Sbjct: 26 ARKDHFDFVAIPLVHPRFKRDALGVSSRREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSPCEESAWASELAFKQ 101
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: D8LQH7_ECTSI (Arginine-N-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH7_ECTSI) HSP 1 Score: 138 bits (348), Expect = 2.660e-36 Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1
Query: 1 ARKDQFDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQ 228
ARKD FDFVA+PLVHPRF RDALGVSS+REDPLTRSDFLLDSRQWSSLIVGKISEWLDMDS CE SA SELAFKQ
Sbjct: 26 ARKDHFDFVAIPLVHPRFKRDALGVSSRREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSPCEESAWASELAFKQ 101
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: A0A836CBK3_9STRA (Protein arginine N-methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBK3_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.070e-26 Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 1 ARKDQFDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQ 228
AR++ FDFV VPLVHPRF+RDA GVS R PLTRSD LLDS+QW SL+VGKISEW+D+DS C + SE+AFKQ
Sbjct: 22 ARQEHFDFVCVPLVHPRFSRDARGVSETRSTPLTRSDLLLDSKQWGSLVVGKISEWIDLDSPCADTRRSSEVAFKQ 97
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: K8YS76_NANGC (Protein arginine n (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS76_NANGC) HSP 1 Score: 88.6 bits (218), Expect = 1.580e-20 Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 1 ARKDQFDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQASSFA 243
AR+ +FDFV +PLVHPRF RD LGVS R LTRSD +DSR W++ +VGK+SEWLD S E L +E KQ ++A
Sbjct: 39 ARQSKFDFVTIPLVHPRFERDHLGVSDGRMGTLTRSDMEVDSRTWTTCVVGKVSEWLDPSSPDETVRLAAEAGMKQELAWA 119
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: A0A1S3H7V5_LINUN (Protein arginine N-methyltransferase n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H7V5_LINUN) HSP 1 Score: 90.1 bits (222), Expect = 3.190e-19 Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 1 ARKDQFDFVAVPLVHPRFTRDAL-GVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQASSFA 243
A KD FDFV +P+VHPR+ R+ + G + R+ PLTRSD LL S W SLIVGKIS W+D+DS+ E++ SE AF++ +FA
Sbjct: 24 ATKDGFDFVCIPMVHPRYKREFIEGGAKSRQGPLTRSDLLLTSTDWGSLIVGKISPWIDLDSEVESTRKNSEKAFQEELAFA 105
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: W7T6F8_9STRA (Protein arginine N-methyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6F8_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.120e-18 Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 1 ARKDQFDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQASSFA 243
AR+ +FDFV +PLVHPRF RD LGVS R LTRSD +DSR W++ +VGK+SEWLD S E L +E KQ ++A
Sbjct: 24 ARQSKFDFVTIPLVHPRFERDHLGVSDGRMGTLTRSDMEVDSRTWTTCVVGKVSEWLDPSSPDETVRLAAEAGMKQELAWA 104
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: A0A418FRC4_9STRA (PRMT5_TIM domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FRC4_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.100e-17 Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 25 VAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQASSFA 243
+A PL HPRF RDA GVS R P TRSD +LDSR W+S ++G +S+W+D+DS C+ +E FKQ ++A
Sbjct: 13 IAAPLFHPRFRRDANGVSDARNGPQTRSDLVLDSRGWTSSVIGNVSKWIDLDSSCDHVRWTAEAVFKQELAWA 85
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: A0A7S1CPH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPH1_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.800e-17 Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 16 FDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQASSFA 243
F+F+ PLVHPRF RDA+GVS RE TRSD L+S+ W++ +VGK+S WLD+DS A S AFKQ ++A
Sbjct: 38 FEFITAPLVHPRFRRDAIGVSDAREGEFTRSDLELESKHWTTSVVGKLSPWLDLDSRHAAVRDASVKAFKQEMAWA 113
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: A0A485LAI9_9STRA (Protein arginine N-methyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAI9_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.830e-17 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 7 KDQFDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQASSFA 243
+++ +AVPL HPRF RD GVS R+ P TRSD +LDSR W+S ++G +S+W+D DS C+ L +E FKQ ++A
Sbjct: 27 EERITIIAVPLFHPRFRRDTSGVSDARDGPQTRSDLVLDSRGWTSSVIGNLSKWIDFDSSCDRVRLTAEQVFKQELAWA 105
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Match: A0A3R6YA54_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YA54_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.040e-16 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 7 KDQFDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVGKISEWLDMDSDCEASALGSELAFKQASSFA 243
+++ +A PL HPRF RDA GVS R+ P TRSD +LDSR W+S ++G +S+W+D+DS C+ +E FKQ ++A
Sbjct: 26 EERITLIAAPLFHPRFRRDANGVSDSRDGPQTRSDLVLDSRGWTSSVIGNVSKWIDLDSICDHVRWTAEAVFKQELAWA 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19056.5258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19056.5258.1 >prot_H-elongata_contig19056.5258.1 ID=prot_H-elongata_contig19056.5258.1|Name=mRNA_H-elongata_contig19056.5258.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp ARKDQFDFVAVPLVHPRFTRDALGVSSKREDPLTRSDFLLDSRQWSSLIVback to top mRNA from alignment at H-elongata_contig19056:397..1484+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19056.5258.1 ID=mRNA_H-elongata_contig19056.5258.1|Name=mRNA_H-elongata_contig19056.5258.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1088bp|location=Sequence derived from alignment at H-elongata_contig19056:397..1484+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19056:397..1484+ >mRNA_H-elongata_contig19056.5258.1 ID=mRNA_H-elongata_contig19056.5258.1|Name=mRNA_H-elongata_contig19056.5258.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig19056:397..1484+ (Himanthalia elongata Himel1 dioecious)back to top |