mRNA_H-elongata_contig19045.5253.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19045.5253.1
Unique NamemRNA_H-elongata_contig19045.5253.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19045.5253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19045contigH-elongata_contig19045:4816..6170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1355
Cds size1200
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19045.5253.1prot_H-elongata_contig19045.5253.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19045 4887..6086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.353328-UTR-H-elongata_contig19045:4815..48861622930088.353328-UTR-H-elongata_contig19045:4815..4886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19045 4816..4886 +
1691679276.0550728-UTR-H-elongata_contig19045:4815..48861691679276.0550728-UTR-H-elongata_contig19045:4815..4886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19045 4816..4886 +
1622930088.3932483-UTR-H-elongata_contig19045:6086..61701622930088.3932483-UTR-H-elongata_contig19045:6086..6170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19045 6087..6170 +
1691679276.0710676-UTR-H-elongata_contig19045:6086..61701691679276.0710676-UTR-H-elongata_contig19045:6086..6170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19045 6087..6170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.3781724-CDS-H-elongata_contig19045:4886..60861622930088.3781724-CDS-H-elongata_contig19045:4886..6086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19045 4887..6086 +
1691679276.0632274-CDS-H-elongata_contig19045:4886..60861691679276.0632274-CDS-H-elongata_contig19045:4886..6086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19045 4887..6086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19045.5253.1

>prot_H-elongata_contig19045.5253.1 ID=prot_H-elongata_contig19045.5253.1|Name=mRNA_H-elongata_contig19045.5253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=400bp
MVNLSNKICASDRCYNVASYGRAGSTKREYCAHHSLEGMVNVSNKRCAGE
GCSKLAWYGKAGSVKREYCGEHALEGMVNVSNKIYASDGCYQQPNNEKVR
STKREVSGEHSLEGMVNLSNKMCAGDGCFKTASGNIGNTKREYCAECSLE
GMVNLSNTMCAGDGCSKPASYGNVGSMKREYCAEHAIMKGMVNVSNKSCA
IEGCYMQLMYGSTKRDYWVEHDMEGMANVSNKSCAGDRCYKQPNDEKAES
TKREYCAKHTLEDMVYVSSQMGAGDGCSKLPIYGNAGSTKTEYSTEHALE
GIVKVVKKSVPWDGCSKISSCEKASSAKRNYGAKHAMECMLCIVQHDSAS
SRKRVANLSKSPVSVLKRCITENEVRSSFSETALGSILVKSEVSVTKSR*
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mRNA from alignment at H-elongata_contig19045:4816..6170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19045.5253.1 ID=mRNA_H-elongata_contig19045.5253.1|Name=mRNA_H-elongata_contig19045.5253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1355bp|location=Sequence derived from alignment at H-elongata_contig19045:4816..6170+ (Himanthalia elongata Himel1 dioecious)
ATAAGCAACCAAACTACGGAACGGCCGGAAGCACGAAGCGAGAGTACTGC
GCTGAGCATGCCTTGGAGGGAATGGTCAATTTATCGAACAAAATCTGTGC
CAGTGATAGATGCTATAATGTTGCGAGCTACGGGAGAGCTGGAAGCACGA
AACGAGAGTACTGCGCTCATCACTCATTGGAGGGGATGGTCAATGTTTCC
AACAAAAGGTGTGCCGGTGAGGGATGTTCTAAGCTAGCGTGGTACGGAAA
AGCCGGAAGCGTGAAACGAGAGTACTGCGGTGAGCATGCCTTGGAGGGAA
TGGTCAATGTTTCGAACAAAATTTATGCCAGTGATGGATGTTATCAGCAA
CCAAACAACGAAAAGGTCAGAAGCACGAAGCGAGAGGTCTCCGGTGAGCA
CTCATTGGAGGGGATGGTAAACCTTTCGAACAAAATGTGTGCCGGTGATG
GATGTTTTAAGACAGCGAGCGGAAATATCGGAAACACTAAGCGAGAGTAC
TGCGCTGAGTGCTCATTGGAGGGGATGGTCAACCTTTCGAACACAATGTG
TGCCGGTGATGGATGTTCTAAGCCAGCGAGCTACGGGAACGTCGGAAGCA
TGAAGCGAGAGTACTGCGCTGAGCATGCCATCATGAAGGGAATGGTCAAT
GTTTCAAACAAAAGCTGTGCCATTGAGGGATGTTATATGCAACTAATGTA
CGGAAGCACGAAGCGAGATTACTGGGTTGAGCATGACATGGAGGGGATGG
CCAACGTTTCAAACAAAAGTTGTGCCGGTGATCGATGTTATAAGCAACCA
AATGACGAGAAGGCCGAAAGCACGAAGCGAGAGTACTGCGCTAAGCATAC
CTTGGAGGATATGGTCTATGTTTCGAGCCAAATGGGTGCCGGCGATGGTT
GCTCTAAGCTACCAATCTACGGTAACGCTGGCAGCACGAAAACCGAGTAC
TCCACCGAGCATGCACTGGAGGGGATAGTAAAGGTTGTGAAGAAAAGTGT
TCCCTGGGATGGATGCTCTAAAATATCTTCCTGTGAGAAGGCCAGCAGCG
CGAAGCGGAATTACGGCGCAAAACATGCTATGGAGTGCATGTTGTGTATC
GTTCAACACGACAGTGCAAGTTCCAGGAAGCGGGTTGCGAATCTCTCTAA
ATCGCCAGTATCCGTTTTGAAGAGATGTATAACTGAAAATGAGGTTAGAT
CCTCCTTTTCCGAGACTGCGTTAGGTAGTATTCTGGTGAAGTCGGAGGTA
TCAGTAACTAAATCCAGGTAGATAGTTTTTTCTAAAGATTCTAGCAGAGG
GTCTACTGGCGAACGGGAGCGCTGACATTGTGCTCCGTGGATTTCATGTC
TAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig19045:4816..6170+

>mRNA_H-elongata_contig19045.5253.1 ID=mRNA_H-elongata_contig19045.5253.1|Name=mRNA_H-elongata_contig19045.5253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2400bp|location=Sequence derived from alignment at H-elongata_contig19045:4816..6170+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAATTTATCGAACAAAATCTGTGCCAGTGATAGATGCTATAATGT
TGCGAGCTACGGGAGAGCTGGAAGCACGAAACGAGAGTACTGCGCTCATC
ACTCATTGGAGGGGATGGTCAATGTTTCCAACAAAAGGTGTGCCGGTGAG
GGATGTTCTAAGCTAGCGTGGTACGGAAAAGCCGGAAGCGTGAAACGAGA
GTACTGCGGTGAGCATGCCTTGGAGGGAATGGTCAATGTTTCGAACAAAA
TTTATGCCAGTGATGGATGTTATCAGCAACCAAACAACGAAAAGGTCAGA
AGCACGAAGCGAGAGGTCTCCGGTGAGCACTCATTGGAGGGGATGGTAAA
CCTTTCGAACAAAATGTGTGCCGGTGATGGATGTTTTAAGACAGCGAGCG
GAAATATCGGAAACACTAAGCGAGAGTACTGCGCTGAGTGCTCATTGGAG
GGGATGGTCAACCTTTCGAACACAATGTGTGCCGGTGATGGATGTTCTAA
GCCAGCGAGCTACGGGAACGTCGGAAGCATGAAGCGAGAGTACTGCGCTG
AGCATGCCATCATGAAGGGAATGGTCAATGTTTCAAACAAAAGCTGTGCC
ATTGAGGGATGTTATATGCAACTAATGTACGGAAGCACGAAGCGAGATTA
CTGGGTTGAGCATGACATGGAGGGGATGGCCAACGTTTCAAACAAAAGTT
GTGCCGGTGATCGATGTTATAAGCAACCAAATGACGAGAAGGCCGAAAGC
ACGAAGCGAGAGTACTGCGCTAAGCATACCTTGGAGGATATGGTCTATGT
TTCGAGCCAAATGGGTGCCGGCGATGGTTGCTCTAAGCTACCAATCTACG
GTAACGCTGGCAGCACGAAAACCGAGTACTCCACCGAGCATGCACTGGAG
GGGATAGTAAAGGTTGTGAAGAAAAGTGTTCCCTGGGATGGATGCTCTAA
AATATCTTCCTGTGAGAAGGCCAGCAGCGCGAAGCGGAATTACGGCGCAA
AACATGCTATGGAGTGCATGTTGTGTATCGTTCAACACGACAGTGCAAGT
TCCAGGAAGCGGGTTGCGAATCTCTCTAAATCGCCAGTATCCGTTTTGAA
GAGATGTATAACTGAAAATGAGGTTAGATCCTCCTTTTCCGAGACTGCGT
TAGGTAGTATTCTGGTGAAGTCGGAGGTATCAGTAACTAAATCCAGGTAG
ATGGTCAATTTATCGAACAAAATCTGTGCCAGTGATAGATGCTATAATGT
TGCGAGCTACGGGAGAGCTGGAAGCACGAAACGAGAGTACTGCGCTCATC
ACTCATTGGAGGGGATGGTCAATGTTTCCAACAAAAGGTGTGCCGGTGAG
GGATGTTCTAAGCTAGCGTGGTACGGAAAAGCCGGAAGCGTGAAACGAGA
GTACTGCGGTGAGCATGCCTTGGAGGGAATGGTCAATGTTTCGAACAAAA
TTTATGCCAGTGATGGATGTTATCAGCAACCAAACAACGAAAAGGTCAGA
AGCACGAAGCGAGAGGTCTCCGGTGAGCACTCATTGGAGGGGATGGTAAA
CCTTTCGAACAAAATGTGTGCCGGTGATGGATGTTTTAAGACAGCGAGCG
GAAATATCGGAAACACTAAGCGAGAGTACTGCGCTGAGTGCTCATTGGAG
GGGATGGTCAACCTTTCGAACACAATGTGTGCCGGTGATGGATGTTCTAA
GCCAGCGAGCTACGGGAACGTCGGAAGCATGAAGCGAGAGTACTGCGCTG
AGCATGCCATCATGAAGGGAATGGTCAATGTTTCAAACAAAAGCTGTGCC
ATTGAGGGATGTTATATGCAACTAATGTACGGAAGCACGAAGCGAGATTA
CTGGGTTGAGCATGACATGGAGGGGATGGCCAACGTTTCAAACAAAAGTT
GTGCCGGTGATCGATGTTATAAGCAACCAAATGACGAGAAGGCCGAAAGC
ACGAAGCGAGAGTACTGCGCTAAGCATACCTTGGAGGATATGGTCTATGT
TTCGAGCCAAATGGGTGCCGGCGATGGTTGCTCTAAGCTACCAATCTACG
GTAACGCTGGCAGCACGAAAACCGAGTACTCCACCGAGCATGCACTGGAG
GGGATAGTAAAGGTTGTGAAGAAAAGTGTTCCCTGGGATGGATGCTCTAA
AATATCTTCCTGTGAGAAGGCCAGCAGCGCGAAGCGGAATTACGGCGCAA
AACATGCTATGGAGTGCATGTTGTGTATCGTTCAACACGACAGTGCAAGT
TCCAGGAAGCGGGTTGCGAATCTCTCTAAATCGCCAGTATCCGTTTTGAA
GAGATGTATAACTGAAAATGAGGTTAGATCCTCCTTTTCCGAGACTGCGT
TAGGTAGTATTCTGGTGAAGTCGGAGGTATCAGTAACTAAATCCAGGTAG
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