mRNA_H-elongata_contig190279.5245.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190279.5245.1
Unique NamemRNA_H-elongata_contig190279.5245.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5K9M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.280e-13
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            L+Q++K SV L   +    Q V D+ G+LLR++  I +RW +FF  LLN KS  L+PDI  R+ Q P       LG  P  EE+  A K ++  KA G DSLPA +LK
Sbjct:    4 LYQHLKRSVSLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERMTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGNDSLPAEMLK 111          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JJQ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.620e-13
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            L+Q++K SV L   +    Q V D++G+LLR++  I +RW +FF  LLN KS  L+PDI  R+ Q P       LG  P  EE+  A K ++  KA G DSLPA LLK
Sbjct:    4 LYQHLKRSVGLSGRQARGQQFVADEDGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 111          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5J7A9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.280e-12
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            L+Q++K SV L   +    Q V D+ G+LLR++  I +RW +FF  LLN KS  L+PDI  R+ Q P       LG  P  EE+  A K ++  KA G DSLPA LLK
Sbjct:    4 LYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 111          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.740e-12
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            L+Q++K SV L   +    Q V D+ G+LLR++  I +RW +FF  L N KS  L+PDI  R+ Q P       LG  P  EE+  A K ++  KA+G DSLPA LLK
Sbjct:  230 LYQHLKRSVGLSRRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLFNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKALGHDSLPAELLK 337          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JYS1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.330e-12
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            L+Q++K SV L   +    Q V D+ G+LLR++  I +RW +FF  LLN KS  L+PDI  R+ Q P       LG  P  EE+  A K ++  KA G DSLPA LLK
Sbjct:  165 LYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 272          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.360e-12
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            L+Q++K SV L   K    Q V D+ G+LLR++  I +RW +FF  LL+ KS  L+PDI  R+ Q P       LG  P  EE+  A K ++  KA G DSLPA LLK
Sbjct:    4 LYQHLKRSVGLSGRKAGGQQFVADENGVLLRNRDDILQRWAKFFSTLLDTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 111          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JDS0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.930e-12
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   34 LFQNI-KSVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            L+Q++ +SV L   +    Q V D+ G+LLR++  I +RW +FF  LLN KS  L+PDI  R+ Q P       LG  P  EE+  A K ++  KA G DSLPA LLK
Sbjct:  184 LYQHLTRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIVERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 291          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.660e-12
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 1
Query:    1 EKQLRVGNQNKLFQNIKSVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            EK+ R G+Q   ++++K + +E  +   SQ + D++G +LRD   IR+RW ++F  LLN KS  +D     ++ + P    L   P+  E+  A++ +   KAVGLD LPA L+K
Sbjct:   29 EKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIK 143          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5JQV7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.300e-12
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   37 FQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVA---SALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            +Q++K SV L   +    Q V D+ G+LLR++  I +RW +FF  LLN KS  L+PDI  R+ Q P       LG  P  EE+  A K ++  KA G DSLPA LLK
Sbjct:  228 YQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 334          
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Match: A0A6H5L1Q6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.300e-12
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   34 LFQNIK-SVQLEETKKVKSQCVCDKEGILLRDKGRIRERWVQFFRLLLNAKSDMLDPDIPTRLPQHPVAS---ALGIEPAEEEINTAMKAIETAKAVGLDSLPAVLLK 345
            L+Q++K SV L   +    Q V D+ G+LLR++  I +RW +FF  LLN KS  L+P I  R+ Q P A     LG  P  EE+  A K ++  KA G DSLPA LLK
Sbjct:  250 LYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPHIIERVTQRPAARDTRRLGDVPRLEEVARATKGLKNWKAPGHDSLPAELLK 357          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190279.5245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9M9_9PHAE2.280e-1343.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJQ9_9PHAE2.620e-1344.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J7A9_9PHAE1.280e-1244.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCG6_9PHAE1.740e-1243.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYS1_9PHAE2.330e-1244.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE3.360e-1244.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JDS0_9PHAE3.930e-1243.52Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JVM9_9PHAE5.660e-1235.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQV7_9PHAE8.300e-1243.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L1Q6_9PHAE8.300e-1244.44Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190279contigH-elongata_contig190279:548..892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue8e-07
Seed eggNOG ortholog6500.XP_005096957.1
EggNOG free text desc.protein kinase activity
EggNOG OGs39TZY@33154,3BI15@33208,KOG1075@1,KOG1075@2759
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.5907602-CDS-H-elongata_contig190279:547..8921622930087.5907602-CDS-H-elongata_contig190279:547..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190279 548..892 +
1691679275.7254572-CDS-H-elongata_contig190279:547..8921691679275.7254572-CDS-H-elongata_contig190279:547..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190279 548..892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190279.5245.1prot_H-elongata_contig190279.5245.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190279 548..892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190279.5245.1

>prot_H-elongata_contig190279.5245.1 ID=prot_H-elongata_contig190279.5245.1|Name=mRNA_H-elongata_contig190279.5245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
EKQLRVGNQNKLFQNIKSVQLEETKKVKSQCVCDKEGILLRDKGRIRERW
VQFFRLLLNAKSDMLDPDIPTRLPQHPVASALGIEPAEEEINTAMKAIET
AKAVGLDSLPAVLLK
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mRNA from alignment at H-elongata_contig190279:548..892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190279.5245.1 ID=mRNA_H-elongata_contig190279.5245.1|Name=mRNA_H-elongata_contig190279.5245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig190279:548..892+ (Himanthalia elongata Himel1 dioecious)
GAGAAGCAGCTGCGTGTGGGAAACCAGAACAAATTGTTCCAAAACATCAA ATCGGTGCAACTGGAGGAAACGAAGAAGGTCAAATCACAGTGCGTCTGTG ACAAGGAAGGAATACTGCTACGCGATAAAGGGCGAATCCGTGAGAGGTGG GTGCAATTCTTCCGTTTGCTGCTGAACGCAAAATCCGACATGCTCGATCC CGACATCCCGACGAGGCTGCCACAGCATCCAGTCGCAAGTGCCCTTGGGA TCGAGCCCGCAGAGGAGGAGATTAACACAGCGATGAAGGCAATAGAAACC GCAAAAGCAGTGGGGCTGGATAGCCTTCCCGCGGTACTGCTGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig190279:548..892+

>mRNA_H-elongata_contig190279.5245.1 ID=mRNA_H-elongata_contig190279.5245.1|Name=mRNA_H-elongata_contig190279.5245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig190279:548..892+ (Himanthalia elongata Himel1 dioecious)
GAGAAGCAGCTGCGTGTGGGAAACCAGAACAAATTGTTCCAAAACATCAA
ATCGGTGCAACTGGAGGAAACGAAGAAGGTCAAATCACAGTGCGTCTGTG
ACAAGGAAGGAATACTGCTACGCGATAAAGGGCGAATCCGTGAGAGGTGG
GTGCAATTCTTCCGTTTGCTGCTGAACGCAAAATCCGACATGCTCGATCC
CGACATCCCGACGAGGCTGCCACAGCATCCAGTCGCAAGTGCCCTTGGGA
TCGAGCCCGCAGAGGAGGAGATTAACACAGCGATGAAGGCAATAGAAACC
GCAAAAGCAGTGGGGCTGGATAGCCTTCCCGCGGTACTGCTGAAAGAGAA
GCAGCTGCGTGTGGGAAACCAGAACAAATTGTTCCAAAACATCAAATCGG
TGCAACTGGAGGAAACGAAGAAGGTCAAATCACAGTGCGTCTGTGACAAG
GAAGGAATACTGCTACGCGATAAAGGGCGAATCCGTGAGAGGTGGGTGCA
ATTCTTCCGTTTGCTGCTGAACGCAAAATCCGACATGCTCGATCCCGACA
TCCCGACGAGGCTGCCACAGCATCCAGTCGCAAGTGCCCTTGGGATCGAG
CCCGCAGAGGAGGAGATTAACACAGCGATGAAGGCAATAGAAACCGCAAA
AGCAGTGGGGCTGGATAGCCTTCCCGCGGTACTGCTGAAA
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