mRNA_H-elongata_contig190078.5239.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190078.5239.1
Unique NamemRNA_H-elongata_contig190078.5239.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.290e-14
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            E+FLERV VNFE+ST  +  K +P R  E+ MCL+    G WY ++ KD TFP +DPV+SLDVQ+
Sbjct:  273 EDFLERVSVNFEVSTTPEGSKVEPGRVREMAMCLR----GSWYTIRAKDGTFPAEDPVKSLDVQI 333          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A0S8BNE1_9PROT (Uncharacterized protein n=1 Tax=Acidithiobacillales bacterium SG8_45 TaxID=1703383 RepID=A0A0S8BNE1_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 1.810e-7
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   10 FLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            F+++V+  FE++  E     KP RAGE GM L     G+WY+L IKD+  P DDPV  LDV +
Sbjct:  270 FIDQVKSAFEVT--ESSSPVKPQRAGEFGMYLN----GQWYKLSIKDELIPADDPVARLDVSL 326          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A1W9QP82_9BACT (Uncharacterized protein n=1 Tax=Candidatus Cloacimonas sp. 4484_275 TaxID=1970770 RepID=A0A1W9QP82_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 4.640e-7
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            +EFL++V   F++  V  +   KP++A   GM L     GKWY+L   + T+P+DDPV+SLDV +
Sbjct:  268 DEFLKKVGEKFKVEEVTGNKPYKPEKAHTFGMYLD----GKWYKLTALEGTYPKDDPVKSLDVSI 328          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A381I7M5_CLODI (SpoOJ/ParA/ParB/repB family protein n=1 Tax=Clostridioides difficile TaxID=1496 RepID=A0A381I7M5_CLODI)

HSP 1 Score: 52.4 bits (124), Expect = 8.390e-7
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            EEF+ +++ NFE+  +E   K KPD+ G  GM L      KWY++K        +DPV SLD+ +
Sbjct:   70 EEFINKIKENFELEEIEGKEKYKPDKKGTFGMYLGD----KWYKMKANKNLLEIEDPVDSLDISI 130          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: UPI000FD8018D (DUF1015 family protein n=1 Tax=Sulfurivermis fontis TaxID=1972068 RepID=UPI000FD8018D)

HSP 1 Score: 53.1 bits (126), Expect = 1.620e-6
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   46 TVEQHGKK-KPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            TVE+ G + KP RAGE GM LK    G+WYRL IK +  P+DDPV+ LDV +
Sbjct:  279 TVEKTGGQCKPARAGEFGMYLK----GQWYRLTIKPELVPQDDPVKRLDVSL 326          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: UPI00115EF336 (DUF1015 family protein n=1 Tax=Clostridioides difficile TaxID=1496 RepID=UPI00115EF336)

HSP 1 Score: 52.4 bits (124), Expect = 2.530e-6
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            EEF+ +++ NFE+  +E   K KPD+ G  GM L      KWY++K        +DPV SLD+ +
Sbjct:  112 EEFINKIKENFELEEIEGKEKYKPDKKGTFGMYLGD----KWYKMKANKNLLEIEDPVDSLDISI 172          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A1F6TB06_9PROT (Uncharacterized protein n=2 Tax=Candidatus Muproteobacteria TaxID=1817795 RepID=A0A1F6TB06_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 3.040e-6
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 1
Query:    4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            E FL ++R  F ++  +   K  P RAGE GM L     G+WYRL IK +  P DDPVR LDV +
Sbjct:  268 EAFLAKLRAAFAVAPADSAVK--PARAGEFGMYLA----GRWYRLGIKPELVPGDDPVRRLDVSL 326          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: W7TNQ3_9STRA (Uncharacterized conserved protein UCP033563 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNQ3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.050e-6
Identity = 33/84 (39.29%), Postives = 43/84 (51.19%), Query Frame = 1
Query:    4 EEFLERVRVNFEISTV-----------------EQHGKK--KPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            +EFL +V  NFE+S                      G K  +P   GE+GMCL+    G WYRLK ++ + P+ DPV SLDVQV
Sbjct:  274 DEFLSKVMENFEVSKSGGEEVKPDEGAGNGGEPRPGGNKIVRPTVKGEVGMCLR----GTWYRLKAREASVPKHDPVNSLDVQV 353          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A3B1ANF2_9ZZZZ (Related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1ANF2_9ZZZZ)

HSP 1 Score: 51.2 bits (121), Expect = 7.770e-6
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 1
Query:    4 EEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            +EFL +   NFE+   +Q  K  P++    GM L      +WYRL IKD   P+DDPVR LDV +
Sbjct:  267 DEFLRQCAENFEVQASDQEVK--PEKPNVFGMYLDN----QWYRLVIKDNLIPQDDPVRRLDVSL 325          
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Match: A0A3D1RPN9_9FIRM (DUF1015 domain-containing protein n=1 Tax=Syntrophomonas sp. TaxID=2053627 RepID=A0A3D1RPN9_9FIRM)

HSP 1 Score: 51.2 bits (121), Expect = 7.770e-6
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1
Query:   10 FLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKDQTFPRDDPVRSLDVQV 198
            FL+ V   F+I+     G  +P+    IGM L+    G+WY LK+++ +FP DDPV  LDV +
Sbjct:  271 FLDAVGRKFDITPCSDRGPYRPECKHRIGMYLQ----GRWYTLKVREGSFPADDPVERLDVSI 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190078.5239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G0D7_ECTSI5.290e-1453.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0S8BNE1_9PROT1.810e-746.03Uncharacterized protein n=1 Tax=Acidithiobacillale... [more]
A0A1W9QP82_9BACT4.640e-741.54Uncharacterized protein n=1 Tax=Candidatus Cloacim... [more]
A0A381I7M5_CLODI8.390e-738.46SpoOJ/ParA/ParB/repB family protein n=1 Tax=Clostr... [more]
UPI000FD8018D1.620e-655.77DUF1015 family protein n=1 Tax=Sulfurivermis fonti... [more]
UPI00115EF3362.530e-638.46DUF1015 family protein n=1 Tax=Clostridioides diff... [more]
A0A1F6TB06_9PROT3.040e-646.15Uncharacterized protein n=2 Tax=Candidatus Muprote... [more]
W7TNQ3_9STRA3.050e-639.29Uncharacterized conserved protein UCP033563 n=3 Ta... [more]
A0A3B1ANF2_9ZZZZ7.770e-643.08Related to HTH domain of SpoOJ/ParA/ParB/repB fami... [more]
A0A3D1RPN9_9FIRM7.770e-639.68DUF1015 domain-containing protein n=1 Tax=Syntroph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190078contigH-elongata_contig190078:274..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog2880.D7G0D7
EggNOG free text desc.Protein of unknown function (DUF1015)
EggNOG OGs2SMYX@2759,COG4198@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.0340285-CDS-H-elongata_contig190078:273..4711622930087.0340285-CDS-H-elongata_contig190078:273..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190078 274..471 +
1691679275.4729457-CDS-H-elongata_contig190078:273..4711691679275.4729457-CDS-H-elongata_contig190078:273..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190078 274..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190078.5239.1prot_H-elongata_contig190078.5239.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190078 274..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190078.5239.1

>prot_H-elongata_contig190078.5239.1 ID=prot_H-elongata_contig190078.5239.1|Name=mRNA_H-elongata_contig190078.5239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
IEEFLERVRVNFEISTVEQHGKKKPDRAGEIGMCLKTDAKGKWYRLKIKD
QTFPRDDPVRSLDVQV
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mRNA from alignment at H-elongata_contig190078:274..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190078.5239.1 ID=mRNA_H-elongata_contig190078.5239.1|Name=mRNA_H-elongata_contig190078.5239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig190078:274..471+ (Himanthalia elongata Himel1 dioecious)
ATAGAAGAGTTTCTGGAGCGCGTCCGCGTGAACTTCGAGATATCCACGGT TGAACAGCATGGGAAGAAGAAGCCGGATCGCGCAGGAGAGATCGGCATGT GCCTCAAAACAGACGCAAAAGGGAAATGGTACCGCCTCAAGATCAAGGAC CAGACTTTCCCCCGTGACGATCCTGTTAGGTCGCTAGACGTTCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig190078:274..471+

>mRNA_H-elongata_contig190078.5239.1 ID=mRNA_H-elongata_contig190078.5239.1|Name=mRNA_H-elongata_contig190078.5239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig190078:274..471+ (Himanthalia elongata Himel1 dioecious)
ATAGAAGAGTTTCTGGAGCGCGTCCGCGTGAACTTCGAGATATCCACGGT
TGAACAGCATGGGAAGAAGAAGCCGGATCGCGCAGGAGAGATCGGCATGT
GCCTCAAAACAGACGCAAAAGGGAAATGGTACCGCCTCAAGATCAAGGAC
CAGACTTTCCCCCGTGACGATCCTGTTAGGTCGCTAGACGTTCAGGTGAT
AGAAGAGTTTCTGGAGCGCGTCCGCGTGAACTTCGAGATATCCACGGTTG
AACAGCATGGGAAGAAGAAGCCGGATCGCGCAGGAGAGATCGGCATGTGC
CTCAAAACAGACGCAAAAGGGAAATGGTACCGCCTCAAGATCAAGGACCA
GACTTTCCCCCGTGACGATCCTGTTAGGTCGCTAGACGTTCAGGTG
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