mRNA_H-elongata_contig18981.5228.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI) HSP 1 Score: 958 bits (2476), Expect = 0.000e+0 Identity = 496/671 (73.92%), Postives = 558/671 (83.16%), Query Frame = 1
Query: 1 VALCRRFSLSASDLANHWESFAVNHDGKKLGMESWTGFEAEVAKNKAAVTS--GAATPSASRNMSPPSATRSKTPA-IVTPRLGGQRVVHKMTSNDLRSSPPSVGAKRPMPPLSSPEPTAKSKIARQEGYG---SGLSPASVQSPTSLVRVVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIPKS-----SGDVS------NKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
V+LC+RFSLSA DLA+HWESFAVNHDG +LGM SW GFE EVAK+KAA ++ A+T +AS IVTPR G+RVV+ +TS DL SS G KRPM P SSP P A+SK+ARQ+G G + LSP SVQSP LVR VY++R NAGQK AS+N ALGLR +V PSPR+AGTRCDV VD VGA ARYRYMYTPLEERA+++EKGL+ALQ QME +FG E+TPVGVPRQEQVV VGR+CCESTEGKINRASILLEGSRRDS GQR HLDLREL+SFALFPGQ VA QG+NGSGGRMVARGI +GVPRPLP+S P++L+R QHG ELGGG+ LSIFAA GPFTTSD+LVYEPLNDLLGAV+ A PDVVVL+GPFVD+EHP+VA GDA +E V+GGSE VDFETLF+LRLSEKL KL RDLPTQFVLVPSLRDVFH+FVYPQPPF+DRV+GGVELGVGAY +E+MFVLD+PK+ SG S KRVHLAPNPAWLR+NE+TIGVSSTD LFDLSG+EVSAG G NRLARLA HLLQQQSFYPLFPPPA SA QLDMRHAHRW +P+TPDVLLVPS+LAQFAR VQGCLCVNPGQL+KGTGGGTYAELAVHPMP++ L KKQEELADKP+AT+ HDV KRTCVEIRRI
Sbjct: 30 VSLCQRFSLSAGDLADHWESFAVNHDGSRLGMSSWAGFETEVAKSKAAASTPPAASTGTASXXXXXXRXXXXXXXXXIVTPRPAGRRVVNTVTSEDLASS----GTKRPMLPFSSPNPKARSKLARQDGEGGDGASLSPTSVQSPPDLVRAVYSSRKNAGQKTASYNPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMERKFGLTEITPVGVPRQEQVVAVGRVCCESTEGKINRASILLEGSRRDSSGQRAHLDLRELQSFALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRAQHGAELGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDSEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDKLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGARTTSGGASAAAAARQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQGCLCVNPGQLSKGTGGGTYAELAVHPMPQETLAKKQEELADKPDATVEHDVAKRTCVEIRRI 696
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A836CA88_9STRA (DNA polymerase alpha subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA88_9STRA) HSP 1 Score: 493 bits (1268), Expect = 1.540e-160 Identity = 313/694 (45.10%), Postives = 387/694 (55.76%), Query Frame = 1
Query: 1 VALCRRFSLSASDLANHWESFAVNHDGKKLGMESWTGFEAEVAKNKAAVTSGAATPSASRNMSPPSATRSKTPAIVTPRLGGQRVVHKMTSNDLRSSPPSVGAKRPMPPLSSPEPTAKSKIARQEGYGSGLSPA---SVQSPTSLVR--------------------VVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGT-----RCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGG---------SEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLP---STPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
V+LC RFSL DLAN WE++A N KL A +AK A+ +S P S S P + P + P L + + ++P KRP+P L SP + +K AR G G SPA SVQ R YA+R NAG ++ +N + + A+ RC V+ VGA+ARYRYM+ PLEER+ E LLA A++ GE+TPVGVPRQE+V VVGR+ CES EG++ RAS LLEGS RDSGG R L L L SFALFPGQ VAA+GIN G RM RG+ G P P PA A GP+TT DNL YEPLNDLL V+ PDVVVL+GPFVDAEHP +A G A + V GG +EPVDFETLF+LR+ +KL ++L PTQFVL+PS RD FHD YPQPPF D V GG LG+G YAD+ ++ L +P+ + RV PNPA + +S D LFDLS EE + G G RLARLA HLLQQ+SFYPL P A + V LD R A +L + PDVLL+P +LAQFARDV+GC+CVNPG LT+G GGGTYA LA+HP+P+ LE D P+ +PH V +RT +E+RRI
Sbjct: 36 VSLCTRFSLKVDDLANEWEAYACNDQAAKLSSAGLAQLTALLAKRSASSSSARKPPQPS---SAPRRLVTARPTVSPPLLTKESAARAL------ATPVPSHLKRPLPGLMSPPGSTVNKAART-GAGGFSSPAPSLSVQQTPVAARSGGGXXXXXXXXXXAAHMPQAAYADRANAGARVLEYNPSKLMHAGAIAAXXXXXXXXXXRQRCSVEPICGVGAAARYRYMFAPLEERSRLQEAALLAATAELARAHALGELTPVGVPRQEEVTVVGRVVCESGEGRMGRASALLEGSWRDSGGARAALALDALPSFALFPGQIVAARGINSGGMRMAVRGLLPGSPAP-----PAXXXXXXXXXXXXXXXXXXXXVAAGPYTTDDNLEYEPLNDLLAHVQETRPDVVVLMGPFVDAEHPLIAAGAAALP-VPGGXXXXXXXDAAEPVDFETLFRLRVCDKLERVLADPAH-PTQFVLIPSTRDAFHDATYPQPPFADAVAGGAPLGIGEYADDAVYTLGLPRDA------RVACLPNPAAFAVGGAVFAATSADSLFDLSCEEAAGGAGGAPRLARLADHLLQQRSFYPLRP--ARAGVPLDPRRAAALALAPRGAAPDVLLLPGRLAQFARDVRGCVCVNPGALTRGGGGGTYAALALHPLPRAELEAAAR---DAPDIAVPHGVAQRTALEVRRI 701
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA) HSP 1 Score: 462 bits (1190), Expect = 3.310e-149 Identity = 290/691 (41.97%), Postives = 379/691 (54.85%), Query Frame = 1
Query: 1 VALCRRFSLSASDLANHWESFAVNHDGKK-----LGMESWTGFEAEVAKNKAAVTSGAATPSASR------------------------NMSPPSATRSKTP---AIVTPRLGGQRVVHKMTSNDLRS--SPPSVGAKRPMPPLSSPEPTAKSKIARQEGYGSGLSPASVQSPTSLVRVVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRF--GFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIP-KSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
+++ LSA DLAN WE+ A+N L + S EA ++K TP+AS ++S A+ K P A ++P V + S+D SPP+ + P S+P P Y NRTNAGQK + AL + +RYR+MYT LEERA + EK LL LQ + R EVTPVGVP+QE V V+GR+CCE+ EG+IN+AS+LLEGSRRDSGG RV L+L +L +F+LFPGQ VA +G+N SG +MV R I EG+PRP S +++ QH GG LS+ A GP+TT+D+L YEPL DLL + PDV VL GPFVDA HP+VA G+ + E VDFE+LFK+R+S L L T L ++ VLVPSL DVFHD PP DR+ GGV + +E++ L +P S D ++KR++ NP++ +NE+ +GV++ D+L LSG+EVS GNRLARLA+HLLQQQSF+PLFPPPA QLD+RHA +P TPDVLL+PSKL F +DV G LC+NPG LTKG GGGTYA L +HP+P + LE+ PE + H+V +RT EI RI
Sbjct: 35 LSIIHHLGLSARDLANEWEAHAMNRGSDDSSQALLNLSSLGSLEATLSKRGTGAGGATVTPAASTRRSGRASFDPSTLPSTEQAMRKRLSLSEDPASAEKWPGAGAFLSPSPSKAPVKRRPPSSDGAGFMSPPAAASFTPSAAASTPAPMLXXXXXXXXXXXXXXX---------XXATAYLNRTNAGQKAGTLPGALDIN------------------------LPSRYRFMYTTLEERARAQEKMLLRLQDDLVARGLEAEAEVTPVGVPKQETVTVIGRVCCEAPEGRINKASVLLEGSRRDSGGFRVKLELGQLPAFSLFPGQVVAVEGVNSSGFKMVVRRIIEGIPRPFLTSPAKKMLEFQHDSLYQGGGALSLLVAAGPYTTTDSLEYEPLEDLLKVIAARQPDVAVLCGPFVDANHPQVASGETEIAGAGEEKESVDFESLFKMRVSLFLEGLYDTNPTLASRIVLVPSLNDVFHD----HPPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGADKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSYNP--GNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDVGGALCINPGTLTKGGGGGTYAMLHIHPLPAERLERMS------PETEVQHEVARRTHAEIVRI 678
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A7S2ERG3_9STRA (DNA polymerase alpha subunit B n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERG3_9STRA) HSP 1 Score: 375 bits (963), Expect = 1.400e-115 Identity = 248/698 (35.53%), Postives = 364/698 (52.15%), Query Frame = 1
Query: 1 VALCRRFSLSASDLANHWESFAVNHDGKKLGMESWTGFEAEVAKN-----KAAVTSGAATPSASRNMSPPSATRSKTPAIVTPR--LGGQRVVHKMTSNDLRSSPPSVGAKRPMPPLSSPEPTAKSKIARQEGYGSGLSPASVQSPTSLVRVVYANRTNAGQKIASFN--SALGLREQAVPPSPRRAGTRCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRF--------------GFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLREL--------RSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRV-KGGVELGVGAYADEQMFVLDIP-------KSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSA----VQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDV-QGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
A+ + S++ + LA WE+ ++N + +L ++ GF ++ + + VTSGA S+ S S+TP R + + V +++ + L+S P+PP P+S+ + + Y R NAG +AS+N S L + P + +C R+M+T ++RA+++ K L+ +++ + + VGVPRQE+V +GRIC E+ EGK+NR S+LLEGSR S G RV+LD+ L SF+LFPGQ VA +GIN SG ++VA + EG P E+ + G + I GP+TT DNL Y PL+DLL ++ PDVV+L GPFVD +HP V G+ ++ EG + E LF R+S L +L + + L TQFVLVP L D +FVYPQPP DR+ KGG +L + + L + + + KR+H PNP LRINE+TIG++STDVLF ++ +E + P G+RLARL HL+QQQS+YPL+PPP S+A V LD++ +WS+ PD+L+VPSKL FAR V + +NPGQL++GT GGTYA + VHPM + + E K+E++ + V R CVEI+RI
Sbjct: 35 AAMAKNLSITPTQLAESWEAHSINRNISELTDVTFAGFRNDLLSDVESMAPSTVTSGAVHESSGLGKRHASGGPSQTPPPKQRRVEIKEEEVTPRVSVSPLKSK------LSPVPPT----------------------PSSILKGANTPK--YEERKNAGATVASYNPHSLTPLSSSSAPHIFYKHVEKC--------------RFMFTTPQDRANALNKRLVEFGKRIQEVYDIKDMYDVEEDQEVALARLENVGVPRQEKVCCIGRICNEAHEGKLNRTSLLLEGSRHQSNGMRVNLDISPLLDANLETRSSFSLFPGQIVAVEGINASGRKLVAHKLCEGAAPPKAVLTAGEMKEFYKSEKEG----MKIMTCAGPYTTMDNLEYNPLSDLLQQIREEQPDVVILTGPFVDIKHPLVQSGNVEIDVGEGNMSKIPHEALFAQRISALLEQLFEDEEGLGTQFVLVPHLDDAVAEFVYPQPPLSDRLPKGGKQLNLSSAEAIDFGSLGLHHIESANRQPGQSTTPKRIHCVPNPCTLRINEVTIGITSTDVLFHMNCDEANGNLPPGSRLARLTQHLIQQQSYYPLYPPPVSNARNSSVNLDLKQMEKWSMECQPDILIVPSKLTTFARKVLDTTVAINPGQLSRGTAGGTYAVMDVHPMKRSLWEGKEEDVE------IDDGVQDRICVEIKRI 678
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: B8BYS5_THAPS (DNA polymerase alpha subunit B n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYS5_THAPS) HSP 1 Score: 374 bits (959), Expect = 1.640e-114 Identity = 227/574 (39.55%), Postives = 317/574 (55.23%), Query Frame = 1
Query: 343 PTAKSKIARQEGYGSGLSPASVQSPTSLVRVVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGF--------------GEV--------TPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLREL-------RSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDR-VKGGVELGVGAYADEQMFVLDIPKSSGDVSN---KRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDV-QGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
PTAKS Q+ G+G S + +P SL V N NA + + P P T +R+M+TPL RA ++E +L + + ++ EV TPVG+P+Q +VV VGRIC E+ EG++NRASI LEGSR+DS G R+HLDL L +S++ FPGQ VA +GIN SG M A + EGVP P+ S EL++ +GP+ G PLSI + GPFTT DNL Y+PL D++ + PDVV++ GPFVD P V G+ + +G + V +E LF+ + + L ++ D+ TQFVLVPS D+ + VYPQPP ++ V GV+ + + + ++I ++ KRVH NP L+INE+++GV+S+DVLF +S +E +A P G RL R+A HL+QQ+S+YPLFP A+ LD+ + W +P PD+L+VPSKL FAR V + VNPG+LTK T GGTYA + VHPM K+ LEK + A M H V R V+I+RI
Sbjct: 170 PTAKSAPKYQDRTGTG-SLVTSYNPNSLPTAVEVNAQNADNATTQKTCTIQYHPSSTHPQPPTKSTP--------------FRHMFTPLATRAKALESRILTMSDSICEKYNIKSEEEEMLKYEHVSAEVVDDNMACWTPVGIPKQGKVVCVGRICNEAHEGRLNRASIRLEGSRKDSSGSRIHLDLNSLVTNNDNNQSYSFFPGQIVAVEGINSSGRTMQASRLYEGVPPPVEKSTAKELIKYNYGPDGQNGMPLSIVSMCGPFTTKDNLEYDPLVDMVMKISEDQPDVVIMCGPFVDGRQPLVQGGEPTITDEDGNEKKVSYENLFQTKFAALLEEMYANDPDMKTQFVLVPSTEDMICESVYPQPPLVNQEVTSGVKKFNDEFGNLGLNYVEIAGRENIKTSERTKRVHCVSNPCTLKINELSVGVTSSDVLFHISSDETNANLPPGGRLTRIAQHLIQQRSYYPLFP--AAKGACLDLSRSDEWEMPVQPDILIVPSKLTTFARKVLDTTVVVNPGELTKNTTGGTYAVIDVHPMKKEALEKGGD-------AEMEHGVQDRVRVDIKRI 719
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A1Z5KI39_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI39_FISSO) HSP 1 Score: 369 bits (948), Expect = 7.660e-114 Identity = 221/518 (42.66%), Postives = 314/518 (60.62%), Query Frame = 1
Query: 439 YANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDE-TVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGE---VTP---VGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFV--LDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGC-LCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
Y RT AGQ +++F SA R P R +C ++ D + S YR M+T E+RA+++ + LL + + +++ G+ V P VG+PR +QV VGRIC + GKIN S LLEGSR + GG RV LD + +++FPGQ VA +G+N +G ++ + + EG P + +R H + G+PL + A GPFTTSDN Y+PL DLL V+ PDVV+L GPFVD +HP V G ++ EG V +ET F ++S L +LL L TQFVLVPSL D ++VYPQPPF DRV GG++ + + LD +++ ++ +RVH PNP L+INE+ IG++STDVLF +S +E +A P G+RLAR++ HLLQQ+S+YPLFPP + + +D ++ +WS+P PDVL++PSKLA F+R V + VNPG+LT+ T GGTYA + VHP K +LE A +A +PH + +RT VEI+RI
Sbjct: 137 YETRTGAGQIVSTF-SAKEKRTATYVPLSR---PKCAIRKDSFSTNLSHTYRSMFTTTEQRATALNQQLLEMTKHLIDKYQLGQSDQVAPLEGVGIPRADQVCNVGRICNAAHAGKINATSCLLEGSRAE-GGVRVSLDWSGVSQYSVFPGQIVALEGMNPTGRKLQVQRLCEGAAA-APVTTRRSALRQYHL-QAQEGQPLKLVTAAGPFTTSDNFHYQPLQDLLHVVQQEQPDVVILTGPFVDLDHPAVQSGQTILQDEEGNDVIVPYETFFVHKISLLLEELLTEHPMLMTQFVLVPSLEDATAEWVYPQPPFQDRVPGGLQPNIPGADGITIGTMGLDYVETATELPCQRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPP--APGMNMDYQYMEQWSMPCQPDVLILPSKLACFSRTVMDTTIVVNPGRLTRDTVGGTYAIMEVHPFSKDVLE------AADDDAELPHALPERTEVEIKRI 639
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A1Z5K576_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K576_FISSO) HSP 1 Score: 358 bits (918), Expect = 3.890e-109 Identity = 211/524 (40.27%), Postives = 311/524 (59.35%), Query Frame = 1
Query: 439 YANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRCDVKVDETV------GASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFG---EVTP---VGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRS-FALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFV--LDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGC-LCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
Y R AGQ +++F + + A +P + +C ++ + + S YR ++T E+RA+++++ L+ + + ++ G EV P VG+PR +QV +GRIC + GKIN S+LLEGSR GG RV +DL L S +++FPGQ VA +G+N +G ++ + + EG S +L Q+ + G+P+ + A GPFTTSDN Y+P DLL V+ PDVV+L GPFVD HP V G ++ +G V +ET F ++S L +LL L TQFVLVPSL D ++VYPQPPF DRV GG++ + + LD +++ ++ KRVH PNP L+INE+ IG++STDVLF +S +E +A P G+RLAR++ HLLQQ+S+YPLFPP + + +D ++ WS+P PD+LL+PSKLA F+R V + VNPG+LT+ T GGTYA + VHP K +LE ++ +PH + +RT V I+RI
Sbjct: 153 YETRIGAGQIVSTFTAEH--KRTATNDNPLLSRPKCTIRSESSAFSTNNNNLSQAYRSLFTTTEQRATALDQQLIHMGQHLMEKYQLGQSDEVAPLEGVGIPRADQVCNIGRICNAAHYGKINATSVLLEGSRAAVGGARVAVDLSTLSSQYSVFPGQIVALEGMNPTGRKLQVQRLCEGAAAAPVTSRVRDL--RQYHLQAQQGQPVKLLTAAGPFTTSDNFQYQPWQDLLHVVQNEQPDVVILTGPFVDMNHPAVQSGQTALQDEDGNDVIVPYETFFMHKISLLLEELLTENPLLMTQFVLVPSLEDATAEWVYPQPPFQDRVSGGLQPNIPGADGITIGTMGLDYVETATELPAKRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPP--APGMNMDYQYMEYWSMPCQPDLLLLPSKLACFSRIVMDTTIVVNPGRLTRDTMGGTYAIIEVHPFAKDVLETADDD------DELPHALPERTEVIIKRI 664
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A7S2FH66_9STRA (DNA polymerase alpha subunit B n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FH66_9STRA) HSP 1 Score: 342 bits (876), Expect = 1.140e-103 Identity = 216/557 (38.78%), Postives = 316/557 (56.73%), Query Frame = 1
Query: 310 KRPMPPLSSPEPTAKSKIARQEGYGSGLSPASVQSPTSLVRVV---------YANRTNAGQKIASFNSALGLREQAVPPSPRRAGTR--CDVKV--------------DETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFG---FGEVTPVGVPRQEQVVVVGRICCEST-EGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGINGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWV--ESVEGGS---EPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIP-KSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGNRLARLASHLLQQQSFYPLFPP----PASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQ-GCLCVNPGQLTKGTGGGTYAELAVHPMP 1860
KRP P S+P K+ R + SP+S+Q+P + +V YA R NAG + + + + P +R C + V E+VG ++ YR+MYT + +RA+S+++ ++ ++ G +PVGV Q+ VV GR+CC++ EGKIN+ SILLEG R + GGQR+ L L++L SFALFPGQ V +GIN SG RMV + + GVPRPLP A++ + + P L + A GPF ++NL Y PL DLL A DV++L GPFVD HP++ G + ++ +G + E +D+ LF L++++ L + Q V+VPSL D FHD VYPQPP D+ + GV+ + +E+ F ++IP + +V+ KR+HL NPA LRINE+ +G+SSTD+L + E++ RL RLA HL+ QQSF+PLFP A+ V LD+ + RW +P +PD+L++PSKLA FA + G L +NPGQ+ +G+GGGTYA L +HP P
Sbjct: 41 KRPHPTNSTPT-NGPIKVPRNN---TDFSPSSLQTPGQKIDIVSHPVTPSKSYATRKNAGDITLEMRAKIEVPTDS-PGKEINGMSRQPCHINVFGEPGSPAPESDSSHESVGVASHYRHMYTTVMDRAASLQRSFDHMEQELLAHAGKEHSSRRSPVGVRSQDPVVCFGRVCCDTLGEGKINKTSILLEGGRME-GGQRIELKLQDLSSFALFPGQWVLVEGINSSGPRMVVKRLMTGVPRPLPQ---AQITKKRTSP-------LRLVVASGPFCCTNNLDYAPLKDLLLNANSA--DVLILSGPFVDVAHPQLKSGVVLMAGDTDDGATCEMESLDYCNLFNLKVTQALEDMQDAHPSSTLQIVMVPSLADAFHDCVYPQPPLTDQSRKGVKSPW--FPEEKYFDVEIPFAAQTEVTGKRMHLVSNPAMLRINEVVVGISSTDILMSMGRAEIAENPKNKQRLPRLAEHLVNQQSFFPLFPANGGVKANEDVPLDLSQSERWRMPVSPDILILPSKLATFASTLSNGTLALNPGQVARGSGGGTYANLVIHPQP 577
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A7S4EDL8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDL8_9STRA) HSP 1 Score: 338 bits (868), Expect = 6.360e-103 Identity = 230/597 (38.53%), Postives = 325/597 (54.44%), Query Frame = 1
Query: 289 SPPSVGAKRPMP-PLSSPEPTAKSKIARQEGYGSGLSPASVQSPTSLVRVVYANRTNAG----------QKIASFNSALGLREQAVPPSPRRAGTRCDV-------------KVDETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGEVTP--VGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELR-SFALFPGQAVAAQG-INGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQ-MFVLDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEVSAGTPGGN------RLARLASHLLQQQSFYPLFPPPASSAV----QLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPKKMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
+PP KRP+ P +P P K A + + SP P Y +RTN G Q+ A++ + ++AV + A T DV VG + RYR+M+TP ER ++++ L+ ++ F +V P +G Q + GR+C ++ +G++N++S+ LEG R + GG RV LDL + S+ALFPGQ V G G G ++AR I G P P PAS PA+ ++ H + +PLSI+AA GP+TTSD+L Y PL DLL A + A PD VVL+GPFVDA+HP D ++ G E VD TLF L+++ L KL+ + D PTQF+L P+ RD+ + V+PQPP G ++ DE + L++P +VH+ NP +INE+ +GV++TDVLF LS +E+ + R+ARLASHLL Q+SFYPLFPPP+ S+ +D+R +W LP PDVL+ PSKL FARDVQGCL +NPG L+KG GGGT+++L VHP L+ + + T+ H V RT EI RI
Sbjct: 11 APPPSTLKRPLENPTVTPAPRKKVSFAGETPTATETSPK----PPPSTATKYKDRTNGGATVDVANKHLQRRAAWGDLGSVSQRAVVVA---APTEKDVDAWTSSKAYGGTESTQLAVGTATRYRHMFTPPGERCAALDASLVEAAQKIRENFSEKDVEPCAIGTATQTPALFCGRVCLDALDGRLNKSSVCLEGERSE-GGFRVPLDLTAVEGSYALFPGQVVGVVGSAPGEDGTILARSIILGSPAP-PASTPAKQMQEFHTKQQNN-QPLSIWAASGPYTTSDDLDYSPLKDLLAACRAAKPDAVVLLGPFVDADHPLAKNND-----LKEGDESVDAATLFVLKVAWALEKLV-IEEDCPTQFILAPATRDLVAEPVFPQPPLDAPPLGAQNDARPSWQDEMPVGSLELPS--------QVHVVGNPGLFKINEVVVGVTATDVLFQLSSQELFHNGRDNSEIAKMPRVARLASHLLSQRSFYPLFPPPSMSSTVADAPVDLRQHGKWKLPLQPDVLITPSKLQPFARDVQGCLVLNPGHLSKGAGGGTFSQLTVHP------------LSAEGDETVVHGVPARTRAEITRI 571
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Match: A0A8K1CIP2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIP2_PYTOL) HSP 1 Score: 340 bits (872), Expect = 1.020e-102 Identity = 237/667 (35.53%), Postives = 357/667 (53.52%), Query Frame = 1
Query: 1 VALCRRFSLSASDLANHWESFAVNH------DGKKLGMESWTGFEAEVAKNKAAVTSGAATPSASRNMSPPSATRSKTPAIVTPRLGGQRVVHKMTSNDLRSSPPSVGAKRPMPPLSSPEPTAKSKIARQEGYGSGLSPASVQSPTSLVRVVYANRTNAGQKIASFNSALGLREQAVPPSPRRAGTRC-DVKV---DETVGASARYRYMYTPLEERASSMEKGLLALQAQMENRFGFGEVTPVGVPRQEQVVVVGRICCESTEGKINRASILLEGSRRDSGGQRVHLDLRELRSFALFPGQAVAAQGI-NGSGGRMVARGITEGVPRPLPASHPAELVRLQHGPELGGGRPLSIFAAVGPFTTSDNLVYEPLNDLLGAVKLAIPDVVVLVGPFVDAEHPEVARGDAWVESVEGGSEPVDFETLFKLRLSEKLGKLLQTKRDLPTQFVLVPSLRDVFHDFVYPQPPFYDRVKGGVELGVGAYADEQMFVLDIPKSSGDVSNKRVHLAPNPAWLRINEITIGVSSTDVLFDLSGEEV-SAGTPGGNRLARLASHLLQQQSFYPLFPPPASSAVQLDMRHAHRWSLPSTPDVLLVPSKLAQFARDVQGCLCVNPGQLTKGTGGGTYAELAVHPMPK-KMLEKKQEELADKPEATMPHDVVKRTCVEIRRI 1962
+A+C FSL+A +LA W+++++NH D KLG+ F +++A++KAA + + +AS A S TP I +R + +S D ++ K P + + K+AR G SP+S+QSP + Y NRT+AG+ ++ FN+ L +++ VP + T ++V D + A+A YMYTPL ERA ++++ L+ + ++ + + V P QV VVGRI CE+ EGK+N + + LEGSR+ GGQRV LDL + +F ++PG+ VA +G+ + MV + E VP P+P + A L + + RPL + A GPFTT+ N+ Y PLNDLL V+ PDV++LVGPF+D H G VE + FE +F ++ L +L+ + L Q V+VPS+RD H +VYPQPPF ++ K LG +A KRVH+ NP IN++ +GVS+ D++ LS E+ A NRL RL ++ Q+S+YPLFPPP ++ +D+R+ ++ TPDVL++PS L +F V +CVNPGQL KG GGT+A L V P+ K K+ +E+A H V RT V+I+RI
Sbjct: 32 IAICAEFSLTADELAAQWDAYSMNHQVDGAADVDKLGV-----FRSKLAQDKAAKSKEGSAAAASGANKRKHAKVSSTPVI-------KREIKTESSQDPLNA--LYNMKSPEGKNARSFASPPGKVARTAGL---FSPSSMQSPPTTS---YENRTDAGKTVSEFNAHL--KKELVPMTDASENTEAVSIRVPFPDRNLKANA--PYMYTPLFERALALDEQLVEYEELIKTHYNLENIAAVADPSPAQVTVVGRIVCEAAEGKLNASVVQLEGSRKTCGGQRVLLDLSAVPNFQVYPGKIVALEGVYEDTRNPMVVKRFLEPVPAPMPTTEKARLETIYVNDQK---RPLRVVTASGPFTTTSNVSYLPLNDLLQIVREQKPDVLILVGPFIDTTHASFRDG-----LVEFDGMMLGFEDIFLFKVMAALDSILEQHKTL--QVVMVPSVRDAHHQYVYPQPPF-NKKKACEALGSPEHA------------------KRVHMMSNPCTFAINDVVVGVSALDIVMHLSSNELYRAQARDQNRLLRLCQQVVDQRSYYPLFPPPPNAEAPIDLRYMTQFQFERTPDVLILPSMLNRFCGRVHDSICVNPGQLCKGESGGTFAALTVLPLSKDKITNSTTDEVA--------HFVPDRTTVDIKRI 637 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18981.5228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18981.5228.1 >prot_H-elongata_contig18981.5228.1 ID=prot_H-elongata_contig18981.5228.1|Name=mRNA_H-elongata_contig18981.5228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=624bp MESWTGFEAEVAKNKAAVTSGAATPSASRNMSPPSATRSKTPAIVTPRLGback to top mRNA from alignment at H-elongata_contig18981:997..6916+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18981.5228.1 ID=mRNA_H-elongata_contig18981.5228.1|Name=mRNA_H-elongata_contig18981.5228.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5920bp|location=Sequence derived from alignment at H-elongata_contig18981:997..6916+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18981:997..6916+ >mRNA_H-elongata_contig18981.5228.1 ID=mRNA_H-elongata_contig18981.5228.1|Name=mRNA_H-elongata_contig18981.5228.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3744bp|location=Sequence derived from alignment at H-elongata_contig18981:997..6916+ (Himanthalia elongata Himel1 dioecious)back to top |