mRNA_H-elongata_contig18976.5227.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 186 bits (472), Expect = 6.640e-51 Identity = 108/199 (54.27%), Postives = 125/199 (62.81%), Query Frame = 1
Query: 28 IVHDIRASARVPEKKDYITGMRDVKKNMTKKLARLLEGEHVCIASDGWTSCANDTYISLTVCLITSAWELIP-----------------------------------------------MGRLLE-QSGVCTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVT 480
+VH IR SARVPEKKD +T MR VKK M +K++RL+EGE VCI SDGWTSCANDTY+SLT LITSAW+L+ MGRLL + V T IGC N+RLEST+SIVFNGPRVKKVM L RGLVTRY TS+Q A+RL QFV+ Y GV+ K+VIQDVVT
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 139 bits (350), Expect = 5.160e-35 Identity = 85/186 (45.70%), Postives = 111/186 (59.68%), Query Frame = 1
Query: 130 LLEGEHVCIASDGWTSCANDTYISLTVCLITSAWELIPMGRLLEQSGVCTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL*LREPIKKHEEADKLEPLLTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSLVL 687
L+E IA +G TS T + T C ++ GRLLE++ TH+GC+ HRLES TS F GP V K +AL R +VTRY S+Q ++RL Q I VE+KKV+QDV TRW T + LL LR PI +HE D + PLL DW V ++V P+ +PF+L+QK E K VT SLV+
Sbjct: 98 LVEAVKAMIARNGLTS---RTVATTTDC----EPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQ-VERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVI 275
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 132 bits (333), Expect = 2.860e-32 Identity = 79/160 (49.38%), Postives = 97/160 (60.62%), Query Frame = 1
Query: 211 CLITSAWELIPMGRLLEQSG-VCTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL*LREPIKKHEEADKLEPLLTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSLVL 687
C+ +I GRLLE G +HIGC NHR+ESTTS VFNG R + L R LV RY S+QMA RL Q I +E V+QDV TRW T MV LL L + IK HE D++ PLL+ DW V ++ P+L PFM QK LEG +YVTGS+ +
Sbjct: 109 CVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNG-RSLGALGLARTLVGRYKKSSQMAARLVQLCGILQ-MEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTI 266
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.230e-31 Identity = 74/161 (45.96%), Postives = 97/161 (60.25%), Query Frame = 1
Query: 202 LTVCLITSAWELIPMGRLLEQSGV-CTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL*LREPIKKHEEADKLEPLLTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSL 681
+T C+ ++ GRLLE G HIGC NHR+ESTTS VFNG + +A R +V RY S+QM+ RLA F+ I + V+QDV TRW + M+ LL L + IK HE D + P+L+ DW V ++ P+L PFM QK LEG KYVTGS+
Sbjct: 142 VTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILK-LSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSM 300
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.880e-29 Identity = 70/150 (46.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query: 235 LIPMGRLLEQSGVCTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL*LREPIKKHEEADKLEPLLTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSLV 684
++ GRLLE++ +H+GC+ HR ES TS F GP V K +AL RG+VTRY S+Q +NRL Q I VE+KKV+QDV TRW T E D + PLL DW V ++V P+L PFM QK LE K VT SLV
Sbjct: 70 MVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQ-VERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLV 202
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: UPI001A9D9B41 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9D9B41) HSP 1 Score: 64.3 bits (155), Expect = 2.000e-8 Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 289 CYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYL-TSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL*LREPIKKH-EEADKLE---PLLTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSLVL 687
C H L+ + V++++A R V + +SN A ++ G KKK+ QD+ TRW+ T M+ LL L+EP+++ E++ ++ P LT DW + E + VL+P + +LL G KYVT S+++
Sbjct: 63 CAAHTLQLCVHKALSVTGVERLLAACRRTVGHFKHSSNNQAVLSKHAAEL--GAPKKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLI 198
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: UPI001AD6D62A (E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001AD6D62A) HSP 1 Score: 64.3 bits (155), Expect = 2.460e-8 Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 289 CYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYL-TSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL*LREPIKKH-EEADKLE---PLLTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSLVL 687
C H L+ + V++++A R V + +SN A ++ G KKK+ QD+ TRW+ T M+ LL L+EP+++ E++ ++ P LT DW + E + VL+P + +LL G KYVT S+++
Sbjct: 268 CAAHTLQLCVHKALSVTGVERLLAACRRTVGHFKHSSNNQAVLSKHAAEL--GAPKKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLI 403
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6G0W4S3_APHCR (Zinc finger BED domain-containing protein 4-like isoform X2 n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0W4S3_APHCR) HSP 1 Score: 60.8 bits (146), Expect = 3.500e-7 Identity = 41/135 (30.37%), Postives = 65/135 (48.15%), Query Frame = 1
Query: 286 GCYNHRLES-TTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL*LREPIKKHE-EADKLEPLLTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSLV 684
GC+ H + T + + V+ ++ R + T + S+ +RL +QI GV+ KKVIQD+ TRW+ + M+ L L+ I E P A DWTV E +L +L PF K + K + ++
Sbjct: 285 GCFLHTIHLLVTESMKSQKSVQDLLGRARKVSTHFHHSSSATDRLKS-IQIGLGVQHKKVIQDICTRWNSSFYMLERLFNLKNAILIFSSEVPSSLPSFNANDWTVMESLLNLLRPFEELTKRISSNKSIISEVI 418
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: UPI00177D9485 (zinc finger BED domain-containing protein 1-like n=3 Tax=Rhagoletis TaxID=28609 RepID=UPI00177D9485) HSP 1 Score: 60.8 bits (146), Expect = 3.630e-7 Identity = 58/248 (23.39%), Postives = 106/248 (42.74%), Query Frame = 1
Query: 1 MLEDVHFRSIVHDIRASARVPEKKDYITGMRDVKKNMTKKLA--RLLEGEHVCIASDGWTSCANDTYISLTVCLITSAWELIPMGRLLEQSGVCTHIGCYNHRLESTTSIVFNGPRVKKVMALTR----GLVTRYLTSNQMANRLAQFVQIYPGVEKK--KVIQDVVTRWSLTCTMVGWLL*LREPIKKHEEADKLEPL-----------LTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSLVL 687
++ED F+ +V + S ++P +K + + + T ++ RL VC+ DGWTS A D++IS+T I + + L + C ++ T+ + KK+ + + G + ++ AN A G+E K+I DV TRW+ T M+ +L +++ + K L L+ +W V + + V+E F + + G KYV+ S V+
Sbjct: 123 VVEDAEFKKLVFMLNPSYKLPTRKTISSTLVPATYSETVEIVKQRLGRAYAVCLTVDGWTSRAQDSFISVTAHYIVEDNKCSFLASDL--------LSCVSYTERHTSDNI-----TKKLTEILQEWDLGHKITVIATDNAANMKASLNATAKGMELPVCKLINDVPTRWNSTYEMLKRILLIKDAVISTVAVVKSSALVRDEGLCSIDLLSNEEWLVAQQTMDVMEMFEIVTTTISGEKYVSASTVI 357
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: UPI000B938B10 (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B938B10) HSP 1 Score: 57.4 bits (137), Expect = 4.000e-6 Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 1
Query: 280 HIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLT------SNQMANRLAQFVQIYPGV-EKKKVIQDVVTRWSLTCTMVGWLL*LREPIKKHEEA-DKLEPLLTAGDWTVREMVLPVLEPFMLTQKLLEGRKYVTGSLVL 687
+IGC+ H L V+ + L L+ R T + + N + + QI G+ E+KK+IQDV TRW+ T M+ + + + I+ D L++ DW + + ++ +L+PF K + +KY SLV+
Sbjct: 16 NIGCFAHTLNLI---------VQSALELENNLIDRVKTIVSHFKKSTVTNNIFKTYQINNGIKERKKLIQDVQTRWNSTYYMINRFVEMEKSIRGTLGLLDNAPDTLSSEDWLILQDLIKILKPFDEATKAISRQKYTIASLVI 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18976.5227.1 >prot_H-elongata_contig18976.5227.1 ID=prot_H-elongata_contig18976.5227.1|Name=mRNA_H-elongata_contig18976.5227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp MLEDVHFRSIVHDIRASARVPEKKDYITGMRDVKKNMTKKLARLLEGEHVback to top mRNA from alignment at H-elongata_contig18976:487..1314+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18976.5227.1 ID=mRNA_H-elongata_contig18976.5227.1|Name=mRNA_H-elongata_contig18976.5227.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at H-elongata_contig18976:487..1314+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18976:487..1314+ >mRNA_H-elongata_contig18976.5227.1 ID=mRNA_H-elongata_contig18976.5227.1|Name=mRNA_H-elongata_contig18976.5227.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig18976:487..1314+ (Himanthalia elongata Himel1 dioecious)back to top |