mRNA_H-elongata_contig189700.5224.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189700.5224.1
Unique NamemRNA_H-elongata_contig189700.5224.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189700.5224.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.780e-26
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 FADAIVGLNAAYLTRIKAQIMKWVQNLRAQHLEVQLDAEGHCATTLPDDMFNLINMQV 174
            FA AI GLNAAYLTRIKAQI+KWVQNLRAQHLEVQLDAEGH  TTLPDDMFNLINMQ+
Sbjct:  362 FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQI 419
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BLAST of mRNA_H-elongata_contig189700.5224.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.770e-26
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 FADAIVGLNAAYLTRIKAQIMKWVQNLRAQHLEVQLDAEGHCATTLPDDMFNLINMQV 174
            FA AI GLNAAYLTRIKAQI+KWVQNLRAQHLEVQLDAEGH  TTLPDDMFNLINMQ+
Sbjct:  199 FAQAINGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQI 256
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BLAST of mRNA_H-elongata_contig189700.5224.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.690e-15
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 FADAIVGLNAAYLTRIKAQIMKWVQNLRAQHLEVQLDAEGHCATTLPDDMFNLINMQV 174
            FA AIV LN+ YL RIKAQIMKWV NL+AQ  E+   ++G   TT PDDMFNL+N+Q+
Sbjct:  380 FAKAIVDLNSMYLKRIKAQIMKWVHNLKAQEPELIQSSDGKWLTTFPDDMFNLVNVQI 437
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BLAST of mRNA_H-elongata_contig189700.5224.1 vs. uniprot
Match: F0Y5W6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5W6_AURAN)

HSP 1 Score: 49.7 bits (117), Expect = 2.470e-5
Identity = 26/63 (41.27%), Postives = 33/63 (52.38%), Query Frame = 1 
Query:    1 FADAIVGLNAAYLTRIKAQIMKWVQNLRAQHLEVQLDAEGHCATTLPDDMFNLINMQVRGTID 189
            FA A   L   YL RI  Q+  W   +RA+  E + D  G   TT P+DMF +I MQV   +D
Sbjct:  565 FATAGAFLMGEYLDRIAKQVESWFVAIRARKAEPRADPAGRLVTTRPEDMFQVITMQVGVALD 627
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BLAST of mRNA_H-elongata_contig189700.5224.1 vs. uniprot
Match: A0A8J2SHR9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHR9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.380e-5
Identity = 23/58 (39.66%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:    1 FADAIVGLNAAYLTRIKAQIMKWVQNLRAQHLEVQLDAEGHCATTLPDDMFNLINMQV 174
            F +A   L A YL R+  Q+  W  N+RA+    +LD  G   TT P+DMF ++ +QV
Sbjct:  616 FNEAAEKLMAQYLARVGDQVEGWFGNIRAKKAAPRLDEHGRPVTTRPEDMFQIVQLQV 673
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189700.5224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5L8_ECTSI3.780e-2689.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE5.770e-2689.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA7.690e-1562.07Exocyst complex component Sec6-domain-containing p... [more]
F0Y5W6_AURAN2.470e-541.27Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SHR9_9STRA3.380e-539.66Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189700contigH-elongata_contig189700:168..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
KEGG koko:K06110,ko:K19988
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930085.4255478-CDS-H-elongata_contig189700:167..3561622930085.4255478-CDS-H-elongata_contig189700:167..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189700 168..356 +
1691679274.7870026-CDS-H-elongata_contig189700:167..3561691679274.7870026-CDS-H-elongata_contig189700:167..356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189700 168..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189700.5224.1prot_H-elongata_contig189700.5224.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189700 168..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189700.5224.1

>prot_H-elongata_contig189700.5224.1 ID=prot_H-elongata_contig189700.5224.1|Name=mRNA_H-elongata_contig189700.5224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
FADAIVGLNAAYLTRIKAQIMKWVQNLRAQHLEVQLDAEGHCATTLPDDM
FNLINMQVRGTID
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mRNA from alignment at H-elongata_contig189700:168..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189700.5224.1 ID=mRNA_H-elongata_contig189700.5224.1|Name=mRNA_H-elongata_contig189700.5224.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig189700:168..356+ (Himanthalia elongata Himel1 dioecious)
TTTGCGGATGCGATCGTCGGACTGAACGCGGCGTATCTCACTCGGATCAA
GGCTCAGATCATGAAGTGGGTACAAAATCTCCGCGCGCAGCATCTGGAGG
TGCAACTGGATGCCGAGGGGCACTGTGCCACCACTCTGCCGGACGACATG
TTCAACCTCATCAACATGCAGGTACGGGGCACCATCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig189700:168..356+

>mRNA_H-elongata_contig189700.5224.1 ID=mRNA_H-elongata_contig189700.5224.1|Name=mRNA_H-elongata_contig189700.5224.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig189700:168..356+ (Himanthalia elongata Himel1 dioecious)
TTTGCGGATGCGATCGTCGGACTGAACGCGGCGTATCTCACTCGGATCAA
GGCTCAGATCATGAAGTGGGTACAAAATCTCCGCGCGCAGCATCTGGAGG
TGCAACTGGATGCCGAGGGGCACTGTGCCACCACTCTGCCGGACGACATG
TTCAACCTCATCAACATGCAGGTACGGGGCACCATCGACTTTGCGGATGC
GATCGTCGGACTGAACGCGGCGTATCTCACTCGGATCAAGGCTCAGATCA
TGAAGTGGGTACAAAATCTCCGCGCGCAGCATCTGGAGGTGCAACTGGAT
GCCGAGGGGCACTGTGCCACCACTCTGCCGGACGACATGTTCAACCTCAT
CAACATGCAGGTACGGGGCACCATCGAC
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