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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1382 |
| Cds size | 297 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930084.1518238-UTR-H-elongata_contig18969:3486..4475 | 1622930084.1518238-UTR-H-elongata_contig18969:3486..4475 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig18969 3487..4475 - |
| 1691679274.7394385-UTR-H-elongata_contig18969:3486..4475 | 1691679274.7394385-UTR-H-elongata_contig18969:3486..4475 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig18969 3487..4475 - |
| 1622930085.3891747-UTR-H-elongata_contig18969:6591..6687 | 1622930085.3891747-UTR-H-elongata_contig18969:6591..6687 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig18969 6592..6687 - |
| 1691679274.7785027-UTR-H-elongata_contig18969:6591..6687 | 1691679274.7785027-UTR-H-elongata_contig18969:6591..6687 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig18969 6592..6687 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930084.1615486-CDS-H-elongata_contig18969:4475..4482 | 1622930084.1615486-CDS-H-elongata_contig18969:4475..4482 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig18969 4476..4482 - |
| 1691679274.7538245-CDS-H-elongata_contig18969:4475..4482 | 1691679274.7538245-CDS-H-elongata_contig18969:4475..4482 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig18969 4476..4482 - |
| 1622930084.796878-CDS-H-elongata_contig18969:4736..4956 | 1622930084.796878-CDS-H-elongata_contig18969:4736..4956 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig18969 4737..4956 - |
| 1691679274.7624142-CDS-H-elongata_contig18969:4736..4956 | 1691679274.7624142-CDS-H-elongata_contig18969:4736..4956 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig18969 4737..4956 - |
| 1622930085.3785653-CDS-H-elongata_contig18969:6521..6591 | 1622930085.3785653-CDS-H-elongata_contig18969:6521..6591 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig18969 6522..6591 - |
| 1691679274.7706685-CDS-H-elongata_contig18969:6521..6591 | 1691679274.7706685-CDS-H-elongata_contig18969:6521..6591 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig18969 6522..6591 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18969.5223.1 >prot_H-elongata_contig18969.5223.1 ID=prot_H-elongata_contig18969.5223.1|Name=mRNA_H-elongata_contig18969.5223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MRELLQAGAEPLAAVPARNDISFSDVRYRAETAASGVLPPEEKLPLGVQP
LHKGTKENILDDPLLLELRRNTSPPEATQRPRRSPSIKAPSSKKKLLT* back to topmRNA from alignment at H-elongata_contig18969:3487..6687- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig18969.5223.1 ID=mRNA_H-elongata_contig18969.5223.1|Name=mRNA_H-elongata_contig18969.5223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3201bp|location=Sequence derived from alignment at H-elongata_contig18969:3487..6687- (Himanthalia elongata Himel1 dioecious)
AGGGACCTTCTCAACGCCGGAGCGGACCTGGAAGCGATCACTGACGCGGG
AGAGACCCCATTGGCCCTCGCCGGGCTGAGCGGGAACTTCGAGGTCATGC
GCGAACTGCTGCAAGCTGGAGCCGAGCCCCTCGCGGCCGTGCCCGCCAGG
AACGACATCTCGTTTACAACGAAGGCGTCATCGCTTCAGGACGAGGAGGT
TGCGAGCATTCCCGAGTTGTGGAGGTGCGTTCTCACATTACCCTTCTGCG
TTGTACCATACCTCAATGTTTTGTGTTACCTGCACACGGATGTACGTATA
GGCTGCTCTTGATGGAATGCTGTGTACGTAGGCTTGAAAATAAAAAGAAA
AAATCACACGTGACACAAGTATACAGACTAGTTTGTGAATCCTGCTGACC
GCTTACGGCGTCGTTGAAAGCCCGACGCAGTGTCGACTTGGGTCCAGTGA
TCAAGAACGCCTGATGTGTAGTGTAAACCCAAGCGAAATCAAGCGGCAAT
CAACGACGCGATCAGCCCCTTTTCCTTGACCATGCTTGTGGCCCCGTGAG
CACTTATATAGCTTAATTCCCCACGTATCACTGAAGTATTGTTTTATTGC
ATCTCCGACCTCCGTAATCAATACCTCTTTGTTCCTTGCCTGATGACAAA
TTATATTAATCGGGGACCAAAATCTCGTTGGAGATCTTGGCCAGCGATGA
AATATGTACCATAAAACGTATACCCGATTTTCACGAGAGCTGTGTTACGT
CCCCTGGACTACTTCATGGATGATACAACAAAGATGTGGATGTTCGGAGG
ATTTACATTTAGTTCACTTGTTTCAAAAGAAAAATATGCGAAATGAAAAA
AAAGCGGTACAATTTATACCGGTTCACAATTATGTACGTGCCACTATAAA
CAGAGTATAGTAACCGGTATAAATTGTACCGCGTAACGTTTCTTTGCAGT
ATCCGGTCGTACATAAAATTGTCGGTTGACAAGATTGAAGCCCCTTGACA
GATGATTCAAGGACACATCCCTACTCTAAAACTAATATATTTTACAGAAC
GACGCCTTGACGCACTGTCAAGAACCTCTCCCCCGAAAACTATGGCCGTA
CATACCCCGGCGGTGTTTCATATACCTTAAAGGAGTATATCCCCCCCCCC
CCCCCCCCTTCATCCCCCGCCCTATATTACCGTTACATCTTTTTAAACCA
GTAAAACTGGGGGACTTTAGGATCTTGGCCCACGCATCCTCCGGGGGCCA
GGCCCACTGTATGTTTTTTACATGAATTATTGCCGATGGGCAATCGTCCC
TCTCCACTTAGCTAAAGGTAACGCATATTATTTTATTTTCTGTCATTATC
CAGTTTACACCAGTTTTTCTTAACCCACCCCCCAATGAAGTCATTCCAAC
CCTCCGAATATCCCCGCCTTCTTAGCACTGTGAGAGGTGCAAAGGCCACG
TTTTATCCACCAATATAGCTACAACCTTCGTCTGGCTGATCCATGATTTA
ACATATACACCATATGCGAGCAGGGGTTATGGTTTATGGTTCAAGCACAA
AAAGGACATGGAATATTCCACTCTTCCGTGTAAAGTTGCCAGTTGACAAG
AGTTGAACCCCTTGACAGACGCGTCAAGAACACCTCCCAATTCTAAAACT
AGAATACTTTCCAAAAATACGCCTTGACGCACTGTCAAGAACCTGTCAAC
CGACAACTATGCGCCGTGTGTGTTCCTCACAGCGACGTACGCTACAGGGC
GGAAACCGCAGCTTCGGGGGTGCTCCCACCAGAAGAGAAATTGCCCCTTG
GCGTTCAACCCCTGCACAAGGGAACAAAGGAGAACATATTGGACGACCCC
CTGCTGTTGGAGTTGCGGCGCAACACATCACCGCCAGAGGCCACCCAAAG
ACCGAGGCGCAGTCCGTCCATCAAGGCACCCTCCTCCAAGAAGAAGCTGC
TGTGTGCCAATGGAGAGCATCGGGTCATACGCGAACAACACAACTGGGAC
CATAGTCGAGAGGAGCAGCCACAGAAATAGACGCAAAATTCGATCGGTCC
CGTCTGGGGTGGAGGCTCAAGAGGAGAGCACCCTTGGTTTGCGTCGGATT
CAAATTGAGCCTTACGCTGAGCAGCCCCGAGGCGGGCGTATCGAGGAATA
TCGAGGAATAGGTGCCGTTCACACCTAGCACGACGTGATGCGCGATGCCT
CGAAGGACCTGATCTAGCACTCACTGCCGATCGCGGTGCTGTAGACGGTT
GCGCTTTGTAATTACATGCATGTCCGTGTAGTTGTGTGTGTGTGTCTCCT
GCTCCAATAGTTTAGGCCTCTTTCTTCTCGGCCTTTATTTTTATGTCTTT
TATATCATCCCTTGCATGCTTAAAACGTGCTTTTAACACTCAAATTTTAC
TGGCTGCTGGAGAGTAGCGCACACTCTTGAGGCAGGGCAGGGGGTCTCGA
AGAACAGGTTTATCGTCCAGGATGTGTGCGCCATATTTGTATTTTGAAAA
CGATACGGAGTTTTGAGAGAAATAATCCACGTTTGTTCTGTGTGTGTGTG
TGTGTGTTTGTGTATTTATTAAACTGCAAATAACCGCGCAATCCGGCCCT
GTCGTCCTAGTCCTTCTATGCCATTTGTATTGATCCTCCTAGGGGGGATC
AATGATGTGTGTGTGTTTGTAGGGCGCAGAGGAATGAAGAGGGCTCTAGT
ATACACACTGATGATGTTGTTGTGGTGCATGAAGCTCAAGGGACTATAAA
ATTGCGAGTGAGTGTAATTGTAACATTATTTTTATTTAAAAGATGTTGTG
TGCACGCAATTTTGGAGCAGACTTTGATTATTGAAATGTCTAGATATTTC
AAATCTGGACTTTCGCTGAGGACTGACCTTGGCGTGGTAATCTGATAAAT
AATTCCCTCTAGTGAGTAAAATAAAAGACGTTACATGCCGACGTCATGAT
GAGAAGATTTGGGTTTTGTGAATCAGGAAATTATCGCAGGGCGCGTGTTG
TGCTTGTTTTGTTTTTTTGGTCTCAGTTCGGGTTGTGTACAGTACTCCTG
TGTTGAAAAAGCAACAAAAAAAATCAAAACTCAAACCATTCCTCATTATT
AAACGAGCCGCAGCAACAAGTGCCGAACCTGCCTCTCAAAAGAAAAAAGA
CTCGACGTGAACATGCATGATCGGGACAGATGGGTCGACCCCCAATCAGG
A back to topCoding sequence (CDS) from alignment at H-elongata_contig18969:3487..6687- >mRNA_H-elongata_contig18969.5223.1 ID=mRNA_H-elongata_contig18969.5223.1|Name=mRNA_H-elongata_contig18969.5223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig18969:3487..6687- (Himanthalia elongata Himel1 dioecious)
ATGCGCGAACTGCTGCAAGCTGGAGCCGAGCCCCTCGCGGCCGTGCCCGC
CAGGAACGACATCTCGTTTAATGCGCGAACTGCTGCAAGCTGGAGCCGAG
CCCCTCGCGGCCGTGCCCGCCAGGAACGACATCTCGTTTAGCGACGTACG
CTACAGGGCGGAAACCGCAGCTTCGGGGGTGCTCCCACCAGAAGAGAAAT
TGCCCCTTGGCGTTCAACCCCTGCACAAGGGAACAAAGGAGAACATATTG
GACGACCCCCTGCTGTTGGAGTTGCGGCGCAACACATCACCGCCAGAGGC
CACCCAAAGACCGAGGCGCAGTCCGTCCATCAAGGCACCCTCCTCCAAGA
AGAAGCTGCTGCGACGTACGCTACAGGGCGGAAACCGCAGCTTCGGGGGT
GCTCCCACCAGAAGAGAAATTGCCCCTTGGCGTTCAACCCCTGCACAAGG
GAACAAAGGAGAACATATTGGACGACCCCCTGCTGTTGGAGTTGCGGCGC
AACACATCACCGCCAGAGGCCACCCAAAGACCGAGGCGCAGTCCGTCCAT
CAAGGCACCCTCCTCCAAGAAGAAGCTGCTGACCTGAGACCTGA back to top
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