mRNA_H-elongata_contig189689.5222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189689.5222.1
Unique NamemRNA_H-elongata_contig189689.5222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.730e-69
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 116
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: A0A7S2U811_9STRA (Histone H3 (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U811_9STRA)

HSP 1 Score: 211 bits (538), Expect = 4.630e-69
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct:    5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 120
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 211 bits (538), Expect = 9.520e-69
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 122
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 211 bits (537), Expect = 1.110e-68
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 116
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.240e-68
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 130
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 213 bits (541), Expect = 2.970e-68
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 189
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 210 bits (534), Expect = 3.180e-68
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAK 116
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: A0A0C4L5K6_9CNID (Histone H3 (Fragment) n=3 Tax=Aglantha digitale TaxID=56245 RepID=A0A0C4L5K6_9CNID)

HSP 1 Score: 209 bits (532), Expect = 4.200e-68
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAV ALQEA+EAYLVGLFEDTNLCAIHAK
Sbjct:    5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVQALQEASEAYLVGLFEDTNLCAIHAK 120
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: A0A6J0UZS0_9SAUR (Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A6J0UZS0_9SAUR)

HSP 1 Score: 209 bits (533), Expect = 4.520e-68
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAK
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 116
[Close]
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Match: A0A0C4L459_ARCIS (Histone H3 (Fragment) n=1 Tax=Arctica islandica TaxID=59239 RepID=A0A0C4L459_ARCIS)

HSP 1 Score: 209 bits (532), Expect = 5.450e-68
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAK 348
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAK
Sbjct:    6 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAK 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189689.5222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA2.730e-6999.14Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A7S2U811_9STRA4.630e-6998.28Histone H3 (Fragment) n=1 Tax=Attheya septentriona... [more]
A0A6V1P6C6_HETAK9.520e-6998.28Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO1.110e-6898.28Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.240e-6898.28Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC2.970e-6899.14Histone domain-containing protein n=8 Tax=Bacillar... [more]
A7RJG4_NEMVE3.180e-6897.41Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A0C4L5K6_9CNID4.200e-6897.41Histone H3 (Fragment) n=3 Tax=Aglantha digitale Ta... [more]
A0A6J0UZS0_9SAUR4.520e-6897.41Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A0C4L459_ARCIS5.450e-6897.41Histone H3 (Fragment) n=1 Tax=Arctica islandica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189689contigH-elongata_contig189689:849..1196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue7.9e-55
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930084.1197255-CDS-H-elongata_contig189689:848..11961622930084.1197255-CDS-H-elongata_contig189689:848..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189689 849..1196 +
1691679274.7231548-CDS-H-elongata_contig189689:848..11961691679274.7231548-CDS-H-elongata_contig189689:848..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189689 849..1196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189689.5222.1prot_H-elongata_contig189689.5222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189689 849..1196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189689.5222.1

>prot_H-elongata_contig189689.5222.1 ID=prot_H-elongata_contig189689.5222.1|Name=mRNA_H-elongata_contig189689.5222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAK
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mRNA from alignment at H-elongata_contig189689:849..1196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189689.5222.1 ID=mRNA_H-elongata_contig189689.5222.1|Name=mRNA_H-elongata_contig189689.5222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig189689:849..1196+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACGAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCC
GCGCAAGCAGCTGGCAACCAAGGCTGCGCGTAAGTCTGCCCCCGCCACAG
GTGGTGTGAAGAAGCCCCACCGCTACAGGCCGGGCACCGTGGCCTTGCGT
GAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATTCGTAAGCTGCC
CTTCCAACGCCTGGTGCGCGAAATAGCCCAAGACTTCAAGAGTGACCTAC
GTTTCCAGGGCTCCGCCGTGTTGGCCCTGCAGGAGGCCGCCGAGGCCTAC
CTTGTTGGTCTGTTCGAAGACACCAACCTGTGCGCCATCCACGCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig189689:849..1196+

>mRNA_H-elongata_contig189689.5222.1 ID=mRNA_H-elongata_contig189689.5222.1|Name=mRNA_H-elongata_contig189689.5222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig189689:849..1196+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACGAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCC
GCGCAAGCAGCTGGCAACCAAGGCTGCGCGTAAGTCTGCCCCCGCCACAG
GTGGTGTGAAGAAGCCCCACCGCTACAGGCCGGGCACCGTGGCCTTGCGT
GAAATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATTCGTAAGCTGCC
CTTCCAACGCCTGGTGCGCGAAATAGCCCAAGACTTCAAGAGTGACCTAC
GTTTCCAGGGCTCCGCCGTGTTGGCCCTGCAGGAGGCCGCCGAGGCCTAC
CTTGTTGGTCTGTTCGAAGACACCAACCTGTGCGCCATCCACGCCAAGAT
GGCTCGCACGAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCCGC
GCAAGCAGCTGGCAACCAAGGCTGCGCGTAAGTCTGCCCCCGCCACAGGT
GGTGTGAAGAAGCCCCACCGCTACAGGCCGGGCACCGTGGCCTTGCGTGA
AATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATTCGTAAGCTGCCCT
TCCAACGCCTGGTGCGCGAAATAGCCCAAGACTTCAAGAGTGACCTACGT
TTCCAGGGCTCCGCCGTGTTGGCCCTGCAGGAGGCCGCCGAGGCCTACCT
TGTTGGTCTGTTCGAAGACACCAACCTGTGCGCCATCCACGCCAAG
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