mRNA_H-elongata_contig189523.5213.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189523.5213.1
Unique NamemRNA_H-elongata_contig189523.5213.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 5.530e-56
Identity = 106/204 (51.96%), Postives = 135/204 (66.18%), Query Frame = 1 
Query:   13 VIGMASDVATLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRSGLHRGPLNFLPIRTLQANHVALSAAAT-----------GGAGAGGIDRGGRE----MLPMAPETPAPAGFLGYVVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYCSLDHVGTDHDPLVLEWEQAFPHIGHWGFRPLQGKTG 579
            VIG+ SD+ T+PDPRIARA+S+KRRAAL +VVV N++V+ +FRR GL+ GP+NFLP+ TL  ++    A              G   AG  D  GRE    +LP APE+PAPAGFLGY VRL+RLRPEHE LRW   FA+F+D+ VFE+  QAEVVRAR     +FYC+LDH G   +P  +   ++ PHI HWGF  L   +G
Sbjct:  223 VIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAGTEDGDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEVVRARVPDRRLFYCALDHPGAQDEPCPIGG-RSMPHISHWGFHGLLADSG 425
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BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.450e-43
Identity = 100/214 (46.73%), Postives = 123/214 (57.48%), Query Frame = 1 
Query:   13 VIGMASDVATLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRSGLHRGPLNFLPIRTLQ--------------ANHVALSAAATGGAG-----AGGIDR---GGREMLPMAPETPAPAGFLGYVVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYCSLDHV-GTDH-DPLVLEWEQAFPHIGHWGFRPLQGKTGG 582
            VIG+ SD+ T+PDPRIARA+S K R  L  VVV N+ V    RRSGL+   + FL +  L+              +N  A  A A+   G      GG       G  +LP+APETPAPAGFLGY VRL++LRP HE LRW    AVFKD+ VFE++ QAEVVRAR     +FYC+LD   G  H  P  L   +  PHI HWGF+   G+ GG
Sbjct:  323 VIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAAL---RVLPHISHWGFQQAPGRVGG 533
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BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.890e-43
Identity = 88/183 (48.09%), Postives = 113/183 (61.75%), Query Frame = 1 
Query:   76 HKRRAALWSVVVTNERVIQEFRRSGLHRGPLNFLPIRTLQANHVALSAAAT-----------GGAGAGGIDRGGRE----MLPMAPETPAPAGFLGYVVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYCSLDHVGTDHDPLVLEWEQAFPHIGHWGFRPLQGKTG 579
            H+RRAAL +VVV N++V+ +FRR G + GP+NFLP+ TL  ++    A              G   AG  D  GRE    +LP APE+PAPAGFLGY VRL+RLRPEHE LRW   FA+F+D+ VFE+  QAE VRAR     +FYC+LDH G   +P      ++ PHI HWGF  +   +G
Sbjct:  147 HQRRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRRIGIVPAGTEDGDGREEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDEPCP-PGGRSLPHISHWGFHGVLADSG 328
[Close]
BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Match: A0A6H5KB01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB01_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.300e-30
Identity = 61/109 (55.96%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:  262 GREMLPMAPETPAPAGFLGYVVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYCSLDHV-GTDH-DPLVLEWEQAFPHIGHWGFRPLQGKTGG 582
            G  +LP+APETPAPAGFLGY VRL++LRP HE LRW    AVFKD+ VF+++ QAEVVRAR      FYC+LD   G  H  P VL   +  PHI HWGF+    + GG
Sbjct:   16 GANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFKTSEQAEVVRARMANQRRFYCALDRPRGQGHPSPAVL---RVLPHISHWGFQQAPVRVGG 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1J4_9PHAE5.530e-5651.96F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKJ2_ECTSI2.450e-4346.73F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI2.890e-4348.09F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KB01_9PHAE4.300e-3055.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189523contigH-elongata_contig189523:54..635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog157072.XP_008877367.1
EggNOG OGs29SQ8@1,2RXED@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size561
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.359953-CDS-H-elongata_contig189523:53..6141622930083.359953-CDS-H-elongata_contig189523:53..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189523 54..614 -
1691679274.3629072-CDS-H-elongata_contig189523:53..6141691679274.3629072-CDS-H-elongata_contig189523:53..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189523 54..614 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.387987-UTR-H-elongata_contig189523:614..6351622930083.387987-UTR-H-elongata_contig189523:614..635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189523 615..635 -
1691679274.3759542-UTR-H-elongata_contig189523:614..6351691679274.3759542-UTR-H-elongata_contig189523:614..635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189523 615..635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189523.5213.1prot_H-elongata_contig189523.5213.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189523 54..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189523.5213.1

>prot_H-elongata_contig189523.5213.1 ID=prot_H-elongata_contig189523.5213.1|Name=mRNA_H-elongata_contig189523.5213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MASDVATLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRSGLHRGPLN
FLPIRTLQANHVALSAAATGGAGAGGIDRGGREMLPMAPETPAPAGFLGY
VVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYC
SLDHVGTDHDPLVLEWEQAFPHIGHWGFRPLQGKTGG
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mRNA from alignment at H-elongata_contig189523:54..635-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189523.5213.1 ID=mRNA_H-elongata_contig189523.5213.1|Name=mRNA_H-elongata_contig189523.5213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at H-elongata_contig189523:54..635- (Himanthalia elongata Himel1 dioecious)
GGCGGAGCCGGCGTCATTGGAATGGCGAGTGATGTCGCAACCCTCCCTGA
CCCGCGTATCGCTCGCGCTGTGTCCCACAAGCGCCGCGCCGCCCTTTGGT
CCGTGGTTGTCACCAACGAACGGGTGATTCAGGAGTTCCGCCGATCTGGC
CTGCACCGGGGCCCGCTGAATTTCCTGCCTATCCGGACGCTCCAGGCCAA
CCATGTCGCGCTGTCGGCCGCCGCCACGGGCGGTGCTGGTGCGGGTGGCA
TCGATCGCGGCGGGCGAGAGATGTTGCCCATGGCGCCCGAGACGCCGGCG
CCCGCAGGGTTCCTAGGGTACGTCGTGCGACTCATACGGCTCCGTCCAGA
ACATGAGCACTTGCGATGGGCCTTTTTCTTCGCAGTCTTTAAGGATATGA
TGGTGTTCGAGTCCGCCGCGCAAGCGGAGGTCGTGCGCGCCCGTACGCAC
GGCGGACATATTTTTTATTGTTCACTGGATCACGTCGGAACAGACCACGA
CCCGCTCGTCCTTGAGTGGGAGCAGGCGTTTCCTCACATCGGTCATTGGG
GATTCCGCCCCTTGCAAGGAAAAACCGGCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig189523:54..635-

>mRNA_H-elongata_contig189523.5213.1 ID=mRNA_H-elongata_contig189523.5213.1|Name=mRNA_H-elongata_contig189523.5213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig189523:54..635- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGTGATGTCGCAACCCTCCCTGACCCGCGTATCGCTCGCGCTGT
GTCCCACAAGCGCCGCGCCGCCCTTTGGTCCGTGGTTGTCACCAACGAAC
GGGTGATTCAGGAGTTCCGCCGATCTGGCCTGCACCGGGGCCCGCTGAAT
TTCCTGCCTATCCGGACGCTCCAGGCCAACCATGTCGCGCTGTCGGCCGC
CGCCACGGGCGGTGCTGGTGCGGGTGGCATCGATCGCGGCGGGCGAGAGA
TGTTGCCCATGGCGCCCGAGACGCCGGCGCCCGCAGGGTTCCTAGGGTAC
GTCGTGCGACTCATACGGCTCCGTCCAGAACATGAGCACTTGCGATGGGC
CTTTTTCTTCGCAGTCTTTAAGGATATGATGGTGTTCGAGTCCGCCGCGC
AAGCGGAGGTCGTGCGCGCCCGTACGCACGGCGGACATATTTTTTATTGT
TCACTGGATCACGTCGGAACAGACCACGACCCGCTCGTCCTTGAGTGGGA
GCAGGCGTTTCCTCACATCGGTCATTGGGGATTCCGCCCCTTGCAAGGAA
AAACCGGCGGCATGGCGAGTGATGTCGCAACCCTCCCTGACCCGCGTATC
GCTCGCGCTGTGTCCCACAAGCGCCGCGCCGCCCTTTGGTCCGTGGTTGT
CACCAACGAACGGGTGATTCAGGAGTTCCGCCGATCTGGCCTGCACCGGG
GCCCGCTGAATTTCCTGCCTATCCGGACGCTCCAGGCCAACCATGTCGCG
CTGTCGGCCGCCGCCACGGGCGGTGCTGGTGCGGGTGGCATCGATCGCGG
CGGGCGAGAGATGTTGCCCATGGCGCCCGAGACGCCGGCGCCCGCAGGGT
TCCTAGGGTACGTCGTGCGACTCATACGGCTCCGTCCAGAACATGAGCAC
TTGCGATGGGCCTTTTTCTTCGCAGTCTTTAAGGATATGATGGTGTTCGA
GTCCGCCGCGCAAGCGGAGGTCGTGCGCGCCCGTACGCACGGCGGACATA
TTTTTTATTGTTCACTGGATCACGTCGGAACAGACCACGACCCGCTCGTC
CTTGAGTGGGAGCAGGCGTTTCCTCACATCGGTCATTGGGGATTCCGCCC
CTTGCAAGGAAAAACCGGCGGC
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