mRNA_H-elongata_contig18947.5207.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: D8LRQ7_ECTSI (DnaJ Cysteine-Rich Domain-Containing Protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ7_ECTSI) HSP 1 Score: 192 bits (489), Expect = 3.610e-53 Identity = 102/160 (63.75%), Postives = 117/160 (73.12%), Query Frame = 2
Query: 2 RGERVCRGATRR--PMRYLQSVGRDQKIAPLSALNPDTVYSAKEWLAGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTKLPGAETSSTLXXXXXXXXXXXXXXXXRGDGRAVPRELDKKTGDA--VDLRLEEIGMSGVRQ 469
RG+R CR A R P S RD+ IAPL A+N DT++SA EW+AGVAGGSVGV+GTLIQLELKQEKL++RRNCPYC+GSGKLVCA+C SAG T KLPG++T STL RGDGRAVPRELD+KT DA VDLRLEEIGM G+ Q
Sbjct: 76 RGKRTCRTAPRSLPPPLGNGSSQRDRTIAPLRAINQDTLFSANEWIAGVAGGSVGVLGTLIQLELKQEKLKTRRNCPYCDGSGKLVCAVCFSAGTFTVKLPGSDTYSTLPCPGCAGNKYITCLNCRGDGRAVPRELDRKTADAAEVDLRLEEIGMGGIGQ 235
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: A0A835YP24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP24_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 8.590e-15 Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 2
Query: 134 AGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTKLPGAETSSTLXXXXXXXXXXXXXXXXRGDGRAVPRELDKKTGDAVDLRLEEIGMS 457
AG+ GGSVGV+GTL+ +E K+ +R C YC GSG LVC C G LT S +L +GDGR+VP L++KT + LEEIGM
Sbjct: 19 AGILGGSVGVIGTLLGIEWKKYNVRQASECCYCRGSGHLVCGQCLGTGELTLVNAVTNKSISLGCPTCSGMTYITCINCKGDGRSVPNFLNRKTSRDPEDELEEIGMG 126
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: A0A835YW14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW14_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.020e-12 Identity = 63/143 (44.06%), Postives = 84/143 (58.74%), Query Frame = 2
Query: 2 RGERVCRGATRRPM----RYLQSVGRDQKIAPLSALNPDTVYSAKEWLAGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTKL--PGAETSSTLXXXXXXXXXXXXXXXXRGDGRAVPRELDKK 412
R E+ G R P+ R +S R ++ + L AL+P + + E ++G AGG+VGVMGTLI LELK++ + R CPYC G+G L CA C GIL + GA ++ XXXXXXXXXXXX DG +VP L+ K
Sbjct: 36 RREQQVAGERRLPLTMHCRRHESRLRRRRSSELRALDPAYIDAVNELMSGFAGGTVGVMGTLIGLELKKQNVVKRSVCPYCQGAGTLTCARCYGVGILLARRRSDGAAAPLSVPCGCXXXXXXXXXXXXXXDGASVPPLLEYK 178
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: A0A7R9U8V3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.070e-10 Identity = 55/127 (43.31%), Postives = 77/127 (60.63%), Query Frame = 2
Query: 83 PLSALNPDTVYSAKEWLAGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTKLPGAETSSTLXXXXXXXXXXXXXXXXRGDG--RAVPRELDKKTGDAVDLRLEEIGMS 457
P L V +A + AGG+VGVMG+L+ +E+++ + R R CPYC G+G+L CA+C AG ++ GA+ S T+ XXXXXXXXXXXXX R VP LD++ + LEEIG++
Sbjct: 32 PTMTLEGLVVNTAGDVACAFAGGTVGVMGSLVAIEIRKLQQRKRNACPYCVGTGRLTCAVCWGAG--KVEIAGAQGSQTVVVDXXXXXXXXXXXXXXXXXXXRLVPLMLDRRASRDPEDELEEIGLA 156
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: R7QE93_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE93_CHOCR) HSP 1 Score: 70.1 bits (170), Expect = 1.010e-9 Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 2
Query: 125 EWLAGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTKLPGAETSSTLXXXXXXXXXXXXXXXXRGDGRAVP 394
E A +AGG+VGVMGT+I LE+++++++ R+ CPYC G+GKL CA C + G + G S+ +GDGR +P
Sbjct: 122 EITAAIAGGTVGVMGTIITLEVRRQQVKERKQCPYCRGNGKLPCATCYTVGAVPC---GDALSAQTGCAVCNERGFLECNHCQGDGRLIP 208
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: A0A2V3J075_9FLOR (Protein ORANGE-LIKE, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J075_9FLOR) HSP 1 Score: 68.2 bits (165), Expect = 1.710e-9 Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 2
Query: 125 EWLAGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTK 292
E A +AGG+VGVMGT+I LEL++++++ R+ CPYC G+GKL CA C + G + ++
Sbjct: 68 EITAAIAGGTVGVMGTIITLELQRQRVKHRKQCPYCRGTGKLPCASCYTIGAVPSR 123
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: M1UXZ1_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UXZ1_CYAM1) HSP 1 Score: 67.0 bits (162), Expect = 5.030e-9 Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 2
Query: 122 KEWLAGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTK 292
+E + AGGS+GV+GTL+ LEL Q + R R CPYC+G GKLVC C + G L +
Sbjct: 85 QELASAFAGGSIGVLGTLLTLELAQTRARERMQCPYCSGRGKLVCGQCLALGTLPNR 141
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: A0A7R9UFV6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFV6_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.670e-7 Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 2
Query: 119 AKEW---LAGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTKLPGAE 307
+K W +AG+ GGS+GV+GTL+ E ++ K+ R CPYC GSG L CA+C A L + PGAE
Sbjct: 66 SKTWQGDIAGLLGGSIGVIGTLVYYEKRRFKMLERVLCPYCQGSGFLTCAVCHGAESLQVR-PGAE 130
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: A0A7S1TK16_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TK16_9RHOD) HSP 1 Score: 57.4 bits (137), Expect = 3.970e-6 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 2
Query: 134 AGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGILTTKLPGAETSS 316
A AGG+VGVMG+LI EL+Q + + + CPYC G+G+L C C G L GA+ +
Sbjct: 28 AAFAGGTVGVMGSLIAWELRQLRDKESKQCPYCLGTGRLRCGRCLGQGELLISEVGAQAKA 88
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Match: M2Y0D2_GALSU (Chaperone protein / DnaJ-related protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y0D2_GALSU) HSP 1 Score: 57.4 bits (137), Expect = 5.560e-6 Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 2
Query: 101 PDTVYSAKEWLAGVAGGSVGVMGTLIQLELKQEKLRSRRNCPYCNGSGKLVCAMCCSAGIL 283
P TV E + +AGG+VGVMGTL+ LE+ ++++ R CPYC G KL C +C G +
Sbjct: 47 PPTV---NEVTSALAGGTVGVMGTLLVLEVIRQRIEEMRQCPYCRGLRKLPCGLCYGMGFI 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18947.5207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18947.5207.1 >prot_H-elongata_contig18947.5207.1 ID=prot_H-elongata_contig18947.5207.1|Name=mRNA_H-elongata_contig18947.5207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp MRYLQSVGRDQKIAPLSALNPDTVYSAKEWLAGVAGGSVGVMGTLIQLELback to top mRNA from alignment at H-elongata_contig18947:3377..6357- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18947.5207.1 ID=mRNA_H-elongata_contig18947.5207.1|Name=mRNA_H-elongata_contig18947.5207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2981bp|location=Sequence derived from alignment at H-elongata_contig18947:3377..6357- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18947:3377..6357- >mRNA_H-elongata_contig18947.5207.1 ID=mRNA_H-elongata_contig18947.5207.1|Name=mRNA_H-elongata_contig18947.5207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig18947:3377..6357- (Himanthalia elongata Himel1 dioecious)back to top |