mRNA_H-elongata_contig189424.5203.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189424.5203.1
Unique NamemRNA_H-elongata_contig189424.5203.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189424.5203.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.450e-16
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 PHLALLACLYHGVGATSCQAERNFFSLSFLIGTLRASMSPFKVEQIMFLKLNQGCPQEV 177
            PHLAL+A L+HG+ +TSCQAERNF +L+FLIG+LR+SM P KVE++MFL+LN+    EV
Sbjct:  412 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV 470
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BLAST of mRNA_H-elongata_contig189424.5203.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.590e-16
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 PHLALLACLYHGVGATSCQAERNFFSLSFLIGTLRASMSPFKVEQIMFLKLNQGCPQEV 177
            PHLAL+A L+HG+ +TSCQAERNF +L+FLIG+LR+SM P KVE++MFL+LN+    EV
Sbjct:  740 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV 798
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189424.5203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE5.450e-1664.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE5.590e-1664.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189424contigH-elongata_contig189424:1018..1197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.0438538-CDS-H-elongata_contig189424:1017..11971622930082.0438538-CDS-H-elongata_contig189424:1017..1197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189424 1018..1197 +
1691679273.8088074-CDS-H-elongata_contig189424:1017..11971691679273.8088074-CDS-H-elongata_contig189424:1017..1197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189424 1018..1197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189424.5203.1prot_H-elongata_contig189424.5203.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189424 1018..1197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189424.5203.1

>prot_H-elongata_contig189424.5203.1 ID=prot_H-elongata_contig189424.5203.1|Name=mRNA_H-elongata_contig189424.5203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
PHLALLACLYHGVGATSCQAERNFFSLSFLIGTLRASMSPFKVEQIMFLK
LNQGCPQEV*
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mRNA from alignment at H-elongata_contig189424:1018..1197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189424.5203.1 ID=mRNA_H-elongata_contig189424.5203.1|Name=mRNA_H-elongata_contig189424.5203.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig189424:1018..1197+ (Himanthalia elongata Himel1 dioecious)
CCCCATCTAGCACTCCTTGCTTGTCTTTACCACGGGGTCGGAGCGACCAG
TTGCCAAGCGGAGCGCAACTTTTTTTCTCTGTCGTTTTTGATTGGCACCT
TGCGGGCAAGCATGAGCCCGTTTAAGGTGGAACAAATTATGTTTCTGAAG
TTGAACCAGGGATGCCCACAAGAGGTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig189424:1018..1197+

>mRNA_H-elongata_contig189424.5203.1 ID=mRNA_H-elongata_contig189424.5203.1|Name=mRNA_H-elongata_contig189424.5203.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig189424:1018..1197+ (Himanthalia elongata Himel1 dioecious)
CCCCATCTAGCACTCCTTGCTTGTCTTTACCACGGGGTCGGAGCGACCAG
TTGCCAAGCGGAGCGCAACTTTTTTTCTCTGTCGTTTTTGATTGGCACCT
TGCGGGCAAGCATGAGCCCGTTTAAGGTGGAACAAATTATGTTTCTGAAG
TTGAACCAGGGATGCCCACAAGAGGTTTAACCCCATCTAGCACTCCTTGC
TTGTCTTTACCACGGGGTCGGAGCGACCAGTTGCCAAGCGGAGCGCAACT
TTTTTTCTCTGTCGTTTTTGATTGGCACCTTGCGGGCAAGCATGAGCCCG
TTTAAGGTGGAACAAATTATGTTTCTGAAGTTGAACCAGGGATGCCCACA
AGAGGTTTAA
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