mRNA_H-elongata_contig189424.5202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189424.5202.1
Unique NamemRNA_H-elongata_contig189424.5202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.470e-29
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    4 VKYFTRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRVPDKPGMDPVIRTSKTNLSFFLEVETAV-EVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVEELGHYF 474
            V+YF  N  + R+L+S +W VTN+VCS+LD + EV +KI GA DT+IS+  F M+E+ EI +    +IRVPD+P  D  +   K  +   +     V EV    ME+KELG A  P++RI   LDPRRK  S+   + G   L+  AI+DV+ +   F
Sbjct:  140 VEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTF 297          
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.390e-28
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    4 VKYFTRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRVPDKPGMDPVIRTSKTNLSFFLEVETAV-EVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVEELGHYF 474
            V+YF  N  + R+L+S +W VTN+VCS+LD + EV +KI GA DT+IS+  F M+E+ EI +    +IRVPD+P  D  +   K  +   +     V EV    ME+KELG A  P++RI   LDPRRK  S+   + G   L+  AI+DV+ +   F
Sbjct:  468 VEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTF 625          
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.950e-23
Identity = 60/168 (35.71%), Postives = 103/168 (61.31%), Query Frame = 1
Query:   16 TRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRV--------PDKPGMDPV------------IRTSKTNLS-FFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVE 456
            ++N + KR+LT+H+W VTN+VCS+L+ ++EV I++ GA DT++S+ TF + E+++++ +    IRV        P   G+ P             I T++T ++   LE +  V+V  EVM+EK +G+AL  ++R+SV LDPRRK + +     G + L+T A +D++
Sbjct:  296 SQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 463          
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 7.560e-21
Identity = 53/147 (36.05%), Postives = 90/147 (61.22%), Query Frame = 1
Query:   16 TRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRVPDKPGMDPVIRTSKTNLSFFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVE 456
            ++N + KR+LT+H+W VTN+VCS+L+ ++EV I++ GA +T++S+ TF + E  E  N          +  +D +           LE +  V+V RE+M+EK +G+AL  ++R+SV LDPRRK + +     G + L+T A +D++
Sbjct:  296 SQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATETHLSQATFIINE-GEGQN----------ESSLDGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 431          
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.670e-19
Identity = 61/183 (33.33%), Postives = 94/183 (51.37%), Query Frame = 1
Query:   10 YFTR------NSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRV------PDKPGMDPVIRTSKTNL--------------SFFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVEELGHYFVA 480
            YF R      N + KR+L+SH+W VTN+VCS+L  ++E+ I+I GA+DT+IS+  F + E+ME++      IR       P  P +D +    + N                   E +   +V  EVMEEK +G+AL  ++R+S  LDPRRK +       G   L+  A +D+++    F A
Sbjct:  142 YFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFTA 324          
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.110e-18
Identity = 50/153 (32.68%), Postives = 86/153 (56.21%), Query Frame = 1
Query:    4 VKYFTRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRVPD--KPGMDPVIRTSKTNLSFFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVE 456
             +YF     + R+LT  +W +TN+VCS+L  ++EV I++ GA+DT+IS+  F + E+ME++      IR  +  +P    V+  S          +  +EV  +VMEEK++G+A+  ++R+S  +DPRRK +       G   L+  A  D++
Sbjct:  476 TEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVTIRMQGAKDTHISQAMFIIHEVMEMLREDSHPIRAQNATEPEEMQVLELSSA-------AQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLK 621          
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.230e-10
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   34 KRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRV--------PDKPGM 231
            KR+LT+H+W VTN+VCS+LD ++E  I++ GA DT+IS+ TF + E+ME++      IRV        P  PG+
Sbjct:  295 KRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIRVENAMVTPPPQAPGL 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE5.470e-2941.77Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.390e-2841.77Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZU3_9PHAE3.950e-2335.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE7.560e-2136.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE2.670e-1933.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.110e-1832.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE3.230e-1044.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189424contigH-elongata_contig189424:397..990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.9948406-UTR-H-elongata_contig189424:396..6241622930081.9948406-UTR-H-elongata_contig189424:396..624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189424 397..624 +
1691679273.7884765-UTR-H-elongata_contig189424:396..6241691679273.7884765-UTR-H-elongata_contig189424:396..624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189424 397..624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.0082133-CDS-H-elongata_contig189424:624..9901622930082.0082133-CDS-H-elongata_contig189424:624..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189424 625..990 +
1691679273.8001795-CDS-H-elongata_contig189424:624..9901691679273.8001795-CDS-H-elongata_contig189424:624..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189424 625..990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189424.5202.1prot_H-elongata_contig189424.5202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189424 625..990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189424.5202.1

>prot_H-elongata_contig189424.5202.1 ID=prot_H-elongata_contig189424.5202.1|Name=mRNA_H-elongata_contig189424.5202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MDPVIRTSKTNLSFFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDP
RRKMMSEIDCIGGGNALQTMAISDVEELGHYFVALRQELTNYRGQNVETD
VCGFSLLGFWLRKSKPTLAQGT
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mRNA from alignment at H-elongata_contig189424:397..990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189424.5202.1 ID=mRNA_H-elongata_contig189424.5202.1|Name=mRNA_H-elongata_contig189424.5202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at H-elongata_contig189424:397..990+ (Himanthalia elongata Himel1 dioecious)
GCCGTCAAGTACTTCACGCGAAACTCGAAGGACAAAAGACGACTTACCAG TCATGACTGGAATGTCACGAACCAAGTTTGCAGCATCCTCGATCCTATCA CCGAAGTGAACATAAAAATTTAAGGAGCTGAGGACACTTACATCAGCAAG GTGACCTTCCCGATGAAGGAACTGATGGAAATCATGAACTCTTAGTGTCT TCAGATCCGGGTTCCAGACAAACCAGGCATGGATCCCGTAATACGAACAA GTAAAACAAATCTGAGCTTTTTTCTGGAGGTTGAAACGGCGGTCGAGGTG TATAGAGAAGTAATGGAGGAAAAGGAACTGGGTAGGGCTTTGAACCCAAT TAAGCGCATCAGCGTCTTTCTCGATCCGAGAAGGAAAATGATGTCCGAGA TCGATTGCATTGGCGGTGGCAATGCGCTTCAGACGATGGCAATTTCGGAC GTCGAAGAGCTCGGACATTACTTCGTCGCCCTTCGACAGGAACTAACTAA CTATCGAGGGCAAAATGTCGAAACAGACGTGTGCGGCTTTTCGCTGCTAG GTTTTTGGCTTCGCAAGAGCAAGCCGACGCTTGCTCAGGGCACG
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Coding sequence (CDS) from alignment at H-elongata_contig189424:397..990+

>mRNA_H-elongata_contig189424.5202.1 ID=mRNA_H-elongata_contig189424.5202.1|Name=mRNA_H-elongata_contig189424.5202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig189424:397..990+ (Himanthalia elongata Himel1 dioecious)
ATGGATCCCGTAATACGAACAAGTAAAACAAATCTGAGCTTTTTTCTGGA
GGTTGAAACGGCGGTCGAGGTGTATAGAGAAGTAATGGAGGAAAAGGAAC
TGGGTAGGGCTTTGAACCCAATTAAGCGCATCAGCGTCTTTCTCGATCCG
AGAAGGAAAATGATGTCCGAGATCGATTGCATTGGCGGTGGCAATGCGCT
TCAGACGATGGCAATTTCGGACGTCGAAGAGCTCGGACATTACTTCGTCG
CCCTTCGACAGGAACTAACTAACTATCGAGGGCAAAATGTCGAAACAGAC
GTGTGCGGCTTTTCGCTGCTAGGTTTTTGGCTTCGCAAGAGCAAGCCGAC
GCTTGCTCAGGGCACGATGGATCCCGTAATACGAACAAGTAAAACAAATC
TGAGCTTTTTTCTGGAGGTTGAAACGGCGGTCGAGGTGTATAGAGAAGTA
ATGGAGGAAAAGGAACTGGGTAGGGCTTTGAACCCAATTAAGCGCATCAG
CGTCTTTCTCGATCCGAGAAGGAAAATGATGTCCGAGATCGATTGCATTG
GCGGTGGCAATGCGCTTCAGACGATGGCAATTTCGGACGTCGAAGAGCTC
GGACATTACTTCGTCGCCCTTCGACAGGAACTAACTAACTATCGAGGGCA
AAATGTCGAAACAGACGTGTGCGGCTTTTCGCTGCTAGGTTTTTGGCTTC
GCAAGAGCAAGCCGACGCTTGCTCAGGGCACG
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