mRNA_H-elongata_contig189394.5200.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189394.5200.1
Unique NamemRNA_H-elongata_contig189394.5200.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189394.5200.1 vs. uniprot
Match: D7FI26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.700e-19
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 VGTPGRVRALAACGSLRLDECALLILDVEKNVKARSVLDMDGVARETMALLADHAKPYLTS 183
            VGTPGR+RALAA GSLRLD  AL+ILD+EKNVK RSVLDMDGV+ +TMA L+D  +P+L S
Sbjct:  291 VGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS 351
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BLAST of mRNA_H-elongata_contig189394.5200.1 vs. uniprot
Match: A0A6U1QK41_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QK41_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 5.790e-5
Identity = 22/59 (37.29%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 VGTPGRVRALAACGSLRLDECALLILDVEKNVKARSVLDMDGVARETMALLADHAKPYL 177
            VGTP R+  L + G L+L + +++I+D+ K+VK  S+L + GV  +   ++ D  KP L
Sbjct:   66 VGTPNRLYKLLSTGDLKLRDTSIIIIDMNKDVKNFSILQVHGVCEDLANVIKDFIKPEL 124
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BLAST of mRNA_H-elongata_contig189394.5200.1 vs. uniprot
Match: A0A8K1CKQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ2_PYTOL)

HSP 1 Score: 48.5 bits (114), Expect = 9.720e-5
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 VGTPGRVRALAACGSLRLDECALLILDVEKNVKARSVLDMDGVARETMALLADHAKPYL 177
            VGTPGR++ L    +L L+    + +D+EK+ KA ++L++   A+E M LL  H  P L
Sbjct:  223 VGTPGRIKKLLEINALSLEHTTHVFIDMEKDKKAMTLLELKDTAKEMMELLQFHLLPQL 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189394.5200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI26_ECTSI3.700e-1972.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U1QK41_9STRA5.790e-537.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1CKQ2_PYTOL9.720e-538.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189394contigH-elongata_contig189394:544..771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D7FI26
Preferred nameCMSS1
KEGG koko:K11858,ko:K14784
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0032991,GO:0042254,GO:0042274,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0071840,GO:1990904
EggNOG free text desc.U3-containing 90S pre-ribosomal complex subunit
EggNOG OGsKOG3089@1,KOG3089@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.8633308-CDS-H-elongata_contig189394:543..7711622930081.8633308-CDS-H-elongata_contig189394:543..771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189394 544..771 +
1691679273.759665-CDS-H-elongata_contig189394:543..7711691679273.759665-CDS-H-elongata_contig189394:543..771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189394 544..771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189394.5200.1prot_H-elongata_contig189394.5200.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189394 544..771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189394.5200.1

>prot_H-elongata_contig189394.5200.1 ID=prot_H-elongata_contig189394.5200.1|Name=mRNA_H-elongata_contig189394.5200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
VGTPGRVRALAACGSLRLDECALLILDVEKNVKARSVLDMDGVARETMAL
LADHAKPYLTSSSRNGVSKSGGGDKG
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mRNA from alignment at H-elongata_contig189394:544..771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189394.5200.1 ID=mRNA_H-elongata_contig189394.5200.1|Name=mRNA_H-elongata_contig189394.5200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig189394:544..771+ (Himanthalia elongata Himel1 dioecious)
GTCGGCACCCCTGGCCGAGTGCGGGCGCTAGCCGCGTGTGGGTCCCTCCG
CCTGGACGAGTGCGCTCTTCTGATTCTGGACGTAGAAAAAAACGTGAAAG
CCCGGAGCGTCCTGGACATGGACGGAGTGGCGCGAGAGACGATGGCTCTG
CTGGCGGATCACGCGAAGCCGTATTTGACCTCGTCCTCTCGGAATGGGGT
TTCGAAGAGTGGTGGCGGCGATAAAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig189394:544..771+

>mRNA_H-elongata_contig189394.5200.1 ID=mRNA_H-elongata_contig189394.5200.1|Name=mRNA_H-elongata_contig189394.5200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig189394:544..771+ (Himanthalia elongata Himel1 dioecious)
GTCGGCACCCCTGGCCGAGTGCGGGCGCTAGCCGCGTGTGGGTCCCTCCG
CCTGGACGAGTGCGCTCTTCTGATTCTGGACGTAGAAAAAAACGTGAAAG
CCCGGAGCGTCCTGGACATGGACGGAGTGGCGCGAGAGACGATGGCTCTG
CTGGCGGATCACGCGAAGCCGTATTTGACCTCGTCCTCTCGGAATGGGGT
TTCGAAGAGTGGTGGCGGCGATAAAGGAGTCGGCACCCCTGGCCGAGTGC
GGGCGCTAGCCGCGTGTGGGTCCCTCCGCCTGGACGAGTGCGCTCTTCTG
ATTCTGGACGTAGAAAAAAACGTGAAAGCCCGGAGCGTCCTGGACATGGA
CGGAGTGGCGCGAGAGACGATGGCTCTGCTGGCGGATCACGCGAAGCCGT
ATTTGACCTCGTCCTCTCGGAATGGGGTTTCGAAGAGTGGTGGCGGCGAT
AAAGGA
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