mRNA_H-elongata_contig189333.5198.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A6H5JYB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB6_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 6.530e-21 Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1
Query: 55 LINTHSHASRFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
+I+ S RFEIEQGLMDGSIAV D+P+VWASKMKELLGVDV GD A+GCLQD+HW
Sbjct: 1 MIHCPSGDKRFEIEQGLMDGSIAVKDVPSVWASKMKELLGVDVPGD-AEGCLQDIHW 56
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: D8LIA5_ECTSI (Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA5_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 3.560e-18 Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1
Query: 82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
RFEIEQGLMDGSIAV D+P+VW SKMKELLGVDV GD A+GCLQD+HW
Sbjct: 484 RFEIEQGLMDGSIAVKDVPSVWVSKMKELLGVDVPGD-AEGCLQDIHW 530
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: UPI001B332089 (carboxypeptidase M32 n=1 Tax=Rhodoferax sp. PAMC 29310 TaxID=2822760 RepID=UPI001B332089) HSP 1 Score: 75.5 bits (184), Expect = 4.000e-14 Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHWCAHSW 240
R+EIE+ L++G I DDIPA+WA KMK+ LGVD G+D +GCLQD+HW S+
Sbjct: 360 RYEIERALINGEIKADDIPALWAEKMKQYLGVDTLGNDRQGCLQDIHWTGGSF 412
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A1X6PAD7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAD7_PORUM) HSP 1 Score: 75.5 bits (184), Expect = 4.080e-14 Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
RF+IEQGLMDGS+AV D+P VWA KM+E +GV+V D A GCLQDVHW
Sbjct: 441 RFDIEQGLMDGSVAVADVPRVWAEKMREYVGVEVP-DAASGCLQDVHW 487
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A1T4VJ26_9GAMM (Carboxypeptidase Taq (M32) metallopeptidase n=1 Tax=Enterovibrio nigricans DSM 22720 TaxID=1121868 RepID=A0A1T4VJ26_9GAMM) HSP 1 Score: 72.8 bits (177), Expect = 1.000e-13 Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
R+EIE+GL++GSI V+DIPA+W KM+E LG+D G+ GC+QD+HW
Sbjct: 104 RYEIERGLIEGSIEVEDIPALWNQKMQEFLGIDTEGNFTNGCMQDIHW 151
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A7W1GJW4_9ACTN (Metal-dependent carboxypeptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1GJW4_9ACTN) HSP 1 Score: 73.9 bits (180), Expect = 1.400e-13 Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 1 RRVSKTGPDCLRGYLCAILINTHSHASRFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
R V+K P +R + N H RFE+EQ ++DGSIA++D+P W +KMKE LG+DV DD +G LQDVHW
Sbjct: 332 RAVNKIQPSLIRVDADQVTYNMHV-ILRFELEQAIIDGSIALEDLPEAWNAKMKEYLGIDVP-DDRRGVLQDVHW 404
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A538JLK9_9ACTN (Carboxypeptidase M32 (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JLK9_9ACTN) HSP 1 Score: 71.2 bits (173), Expect = 1.460e-13 Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 1 RRVSKTGPDCLRGYLCAILINTHSHASRFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHWCA 231
R V+K P +R + N H RFE+EQ L+DG +AV D+P W +KM E LGVDV DDA G LQD+HW A
Sbjct: 17 RAVNKVEPSLIRIDADEVTYNMHI-ILRFELEQDLIDGRVAVPDLPEAWNTKMHEYLGVDVP-DDAHGVLQDMHWAA 91
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: G4WK03_TRYCR (Thermostable carboxypeptidase 1 (Fragment) n=1 Tax=Trypanosoma cruzi TaxID=5693 RepID=G4WK03_TRYCR) HSP 1 Score: 72.4 bits (176), Expect = 1.540e-13 Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
R+EIE+GL++G + V+D+PAVW KMK LG++ G+D +GCLQD+HW
Sbjct: 123 RYEIERGLIEGKLRVEDVPAVWNEKMKSYLGIETLGNDREGCLQDIHW 170
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: D2VMT5_NAEGR (Carboxypeptidase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VMT5_NAEGR) HSP 1 Score: 73.6 bits (179), Expect = 1.930e-13 Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 1
Query: 82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHWCAHSWA 243
RFEIE+GL+DGSI+V D+P VW +K+KE LG+DV +DAKG LQDVHW + ++A
Sbjct: 396 RFEIEKGLLDGSISVADVPKVWNAKVKEYLGLDVP-NDAKGALQDVHWSSGAFA 448
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A7S0Z4I9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z4I9_9CHLO) HSP 1 Score: 73.2 bits (178), Expect = 2.370e-13 Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
R E+E GLMDGSIA+DD+PA W KMK LGVD++ DDAKG LQDVHW
Sbjct: 332 RTELELGLMDGSIAIDDLPAKWNEKMKAYLGVDIT-DDAKGVLQDVHW 378 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig189333.5198.1 >prot_H-elongata_contig189333.5198.1 ID=prot_H-elongata_contig189333.5198.1|Name=mRNA_H-elongata_contig189333.5198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp RRVSKTGPDCLRGYLCAILINTHSHASRFEIEQGLMDGSIAVDDIPAVWAback to top mRNA from alignment at H-elongata_contig189333:305..547- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig189333.5198.1 ID=mRNA_H-elongata_contig189333.5198.1|Name=mRNA_H-elongata_contig189333.5198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig189333:305..547- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig189333:305..547- >mRNA_H-elongata_contig189333.5198.1 ID=mRNA_H-elongata_contig189333.5198.1|Name=mRNA_H-elongata_contig189333.5198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig189333:305..547- (Himanthalia elongata Himel1 dioecious)back to top |