mRNA_H-elongata_contig189333.5198.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189333.5198.1
Unique NamemRNA_H-elongata_contig189333.5198.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A6H5JYB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.530e-21
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1
Query:   55 LINTHSHASRFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
            +I+  S   RFEIEQGLMDGSIAV D+P+VWASKMKELLGVDV GD A+GCLQD+HW
Sbjct:    1 MIHCPSGDKRFEIEQGLMDGSIAVKDVPSVWASKMKELLGVDVPGD-AEGCLQDIHW 56          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: D8LIA5_ECTSI (Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA5_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.560e-18
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
            RFEIEQGLMDGSIAV D+P+VW SKMKELLGVDV GD A+GCLQD+HW
Sbjct:  484 RFEIEQGLMDGSIAVKDVPSVWVSKMKELLGVDVPGD-AEGCLQDIHW 530          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: UPI001B332089 (carboxypeptidase M32 n=1 Tax=Rhodoferax sp. PAMC 29310 TaxID=2822760 RepID=UPI001B332089)

HSP 1 Score: 75.5 bits (184), Expect = 4.000e-14
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:   82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHWCAHSW 240
            R+EIE+ L++G I  DDIPA+WA KMK+ LGVD  G+D +GCLQD+HW   S+
Sbjct:  360 RYEIERALINGEIKADDIPALWAEKMKQYLGVDTLGNDRQGCLQDIHWTGGSF 412          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A1X6PAD7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAD7_PORUM)

HSP 1 Score: 75.5 bits (184), Expect = 4.080e-14
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
            RF+IEQGLMDGS+AV D+P VWA KM+E +GV+V  D A GCLQDVHW
Sbjct:  441 RFDIEQGLMDGSVAVADVPRVWAEKMREYVGVEVP-DAASGCLQDVHW 487          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A1T4VJ26_9GAMM (Carboxypeptidase Taq (M32) metallopeptidase n=1 Tax=Enterovibrio nigricans DSM 22720 TaxID=1121868 RepID=A0A1T4VJ26_9GAMM)

HSP 1 Score: 72.8 bits (177), Expect = 1.000e-13
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
            R+EIE+GL++GSI V+DIPA+W  KM+E LG+D  G+   GC+QD+HW
Sbjct:  104 RYEIERGLIEGSIEVEDIPALWNQKMQEFLGIDTEGNFTNGCMQDIHW 151          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A7W1GJW4_9ACTN (Metal-dependent carboxypeptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1GJW4_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 RRVSKTGPDCLRGYLCAILINTHSHASRFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
            R V+K  P  +R     +  N H    RFE+EQ ++DGSIA++D+P  W +KMKE LG+DV  DD +G LQDVHW
Sbjct:  332 RAVNKIQPSLIRVDADQVTYNMHV-ILRFELEQAIIDGSIALEDLPEAWNAKMKEYLGIDVP-DDRRGVLQDVHW 404          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A538JLK9_9ACTN (Carboxypeptidase M32 (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JLK9_9ACTN)

HSP 1 Score: 71.2 bits (173), Expect = 1.460e-13
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 RRVSKTGPDCLRGYLCAILINTHSHASRFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHWCA 231
            R V+K  P  +R     +  N H    RFE+EQ L+DG +AV D+P  W +KM E LGVDV  DDA G LQD+HW A
Sbjct:   17 RAVNKVEPSLIRIDADEVTYNMHI-ILRFELEQDLIDGRVAVPDLPEAWNTKMHEYLGVDVP-DDAHGVLQDMHWAA 91          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: G4WK03_TRYCR (Thermostable carboxypeptidase 1 (Fragment) n=1 Tax=Trypanosoma cruzi TaxID=5693 RepID=G4WK03_TRYCR)

HSP 1 Score: 72.4 bits (176), Expect = 1.540e-13
Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
            R+EIE+GL++G + V+D+PAVW  KMK  LG++  G+D +GCLQD+HW
Sbjct:  123 RYEIERGLIEGKLRVEDVPAVWNEKMKSYLGIETLGNDREGCLQDIHW 170          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: D2VMT5_NAEGR (Carboxypeptidase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VMT5_NAEGR)

HSP 1 Score: 73.6 bits (179), Expect = 1.930e-13
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHWCAHSWA 243
            RFEIE+GL+DGSI+V D+P VW +K+KE LG+DV  +DAKG LQDVHW + ++A
Sbjct:  396 RFEIEKGLLDGSISVADVPKVWNAKVKEYLGLDVP-NDAKGALQDVHWSSGAFA 448          
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Match: A0A7S0Z4I9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z4I9_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 2.370e-13
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   82 RFEIEQGLMDGSIAVDDIPAVWASKMKELLGVDVSGDDAKGCLQDVHW 225
            R E+E GLMDGSIA+DD+PA W  KMK  LGVD++ DDAKG LQDVHW
Sbjct:  332 RTELELGLMDGSIAIDDLPAKWNEKMKAYLGVDIT-DDAKGVLQDVHW 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189333.5198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYB6_9PHAE6.530e-2175.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIA5_ECTSI3.560e-1883.33Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus s... [more]
UPI001B3320894.000e-1458.49carboxypeptidase M32 n=1 Tax=Rhodoferax sp. PAMC 2... [more]
A0A1X6PAD7_PORUM4.080e-1470.83Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1T4VJ26_9GAMM1.000e-1358.33Carboxypeptidase Taq (M32) metallopeptidase n=1 Ta... [more]
A0A7W1GJW4_9ACTN1.400e-1349.33Metal-dependent carboxypeptidase n=1 Tax=Actinomyc... [more]
A0A538JLK9_9ACTN1.460e-1349.35Carboxypeptidase M32 (Fragment) n=1 Tax=Actinomyce... [more]
G4WK03_TRYCR1.540e-1356.25Thermostable carboxypeptidase 1 (Fragment) n=1 Tax... [more]
D2VMT5_NAEGR1.930e-1362.96Carboxypeptidase n=1 Tax=Naegleria gruberi TaxID=5... [more]
A0A7S0Z4I9_9CHLO2.370e-1370.83Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189333contigH-elongata_contig189333:305..547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue4.3e-15
Seed eggNOG ortholog2880.D8LIA5
KEGG koko:K01299
EggNOG free text desc.Carboxypeptidase Taq (M32) metallopeptidase
EggNOG OGs2QQRM@2759,COG2317@1
EC3.4.17.19
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.7736166-CDS-H-elongata_contig189333:304..5471622930081.7736166-CDS-H-elongata_contig189333:304..547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189333 305..547 -
1691679273.7390523-CDS-H-elongata_contig189333:304..5471691679273.7390523-CDS-H-elongata_contig189333:304..547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189333 305..547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189333.5198.1prot_H-elongata_contig189333.5198.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189333 305..547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189333.5198.1

>prot_H-elongata_contig189333.5198.1 ID=prot_H-elongata_contig189333.5198.1|Name=mRNA_H-elongata_contig189333.5198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
RRVSKTGPDCLRGYLCAILINTHSHASRFEIEQGLMDGSIAVDDIPAVWA
SKMKELLGVDVSGDDAKGCLQDVHWCAHSWA
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mRNA from alignment at H-elongata_contig189333:305..547-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189333.5198.1 ID=mRNA_H-elongata_contig189333.5198.1|Name=mRNA_H-elongata_contig189333.5198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig189333:305..547- (Himanthalia elongata Himel1 dioecious)
AGAAGAGTTAGCAAGACAGGGCCGGATTGCCTTCGCGGTTATTTATGTGC AATTTTAATAAATACACATTCACACGCGAGCAGGTTCGAGATCGAGCAGG GTCTCATGGACGGCAGCATCGCGGTGGACGACATTCCCGCGGTGTGGGCA TCTAAGATGAAGGAGCTCCTGGGAGTGGATGTCTCGGGAGACGACGCCAA GGGCTGCTTGCAAGACGTTCACTGGTGCGCGCACAGCTGGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig189333:305..547-

>mRNA_H-elongata_contig189333.5198.1 ID=mRNA_H-elongata_contig189333.5198.1|Name=mRNA_H-elongata_contig189333.5198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig189333:305..547- (Himanthalia elongata Himel1 dioecious)
AGAAGAGTTAGCAAGACAGGGCCGGATTGCCTTCGCGGTTATTTATGTGC
AATTTTAATAAATACACATTCACACGCGAGCAGGTTCGAGATCGAGCAGG
GTCTCATGGACGGCAGCATCGCGGTGGACGACATTCCCGCGGTGTGGGCA
TCTAAGATGAAGGAGCTCCTGGGAGTGGATGTCTCGGGAGACGACGCCAA
GGGCTGCTTGCAAGACGTTCACTGGTGCGCGCACAGCTGGGCTAGAAGAG
TTAGCAAGACAGGGCCGGATTGCCTTCGCGGTTATTTATGTGCAATTTTA
ATAAATACACATTCACACGCGAGCAGGTTCGAGATCGAGCAGGGTCTCAT
GGACGGCAGCATCGCGGTGGACGACATTCCCGCGGTGTGGGCATCTAAGA
TGAAGGAGCTCCTGGGAGTGGATGTCTCGGGAGACGACGCCAAGGGCTGC
TTGCAAGACGTTCACTGGTGCGCGCACAGCTGGGCT
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